Experiment set2IT087 for Agrobacterium fabrum C58

Compare to:

Rhamnogalacturonan - from potato carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -8.0 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0537 -6.4 -4.4 histidinol dehydrogenase compare
Atu0679 -6.4 -7.6 ATP phosphoribosyltransferase compare
Atu3885 -6.2 -8.6 inositol monophosphatase compare
Atu0678 -6.2 -4.3 histidyl-tRNA synthetase compare
Atu2040 -5.6 -6.0 phosphoserine phosphatase compare
Atu1687 -5.5 -9.4 anthranilate phosphoribosyltransferase compare
Atu1750 -5.5 -6.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu2791 -5.5 -9.9 3-isopropylmalate dehydrogenase compare
Atu2289 -5.4 -15.1 anthranilate synthase component I and II compare
Atu0043 -5.2 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0432 -5.2 -8.7 O-succinylhomoserine sulfhydrylase compare
Atu2264 -5.2 -13.4 2-isopropylmalate synthase compare
Atu2036 -5.2 -12.9 acetolactate synthase III, large subunit compare
Atu2709 -5.1 -15.5 3-isopropylmalate dehydratase, large subunit compare
Atu0041 -5.1 -3.0 glutamine amidotransferase compare
Atu1205 -5.0 -12.6 threonine dehydratase compare
Atu0039 -5.0 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu2650 -5.0 -11.2 glycerol-3-phosphate dehydrogenase compare
Atu1850 -4.9 -4.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0099 -4.8 -8.1 prephenate dehydratase compare
Atu1688 -4.6 -7.6 indole-3-glycerol-phosphate synthase compare
Atu0399 -4.6 -10.2 dihydroorotase compare
Atu1588 -4.6 -9.1 homoserine dehydrogenase compare
Atu3754 -4.5 -6.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -4.4 -5.2 orotate phosphoribosyltransferase compare
Atu2718 -4.4 -9.3 homoserine O-succinyltransferase compare
Atu3739 -4.4 -3.2 phosphoglycerate kinase compare
Atu0486 -4.2 -5.1 dihydroorotate dehydrogenase compare
Atu3706 -4.1 -9.2 D-3-phosphoglycerate dehydrogenase compare
Atu3707 -4.1 -3.2 phosphoserine aminotransferase compare
Atu1307 -4.0 -8.9 dihydroorotase compare
Atu3740 -4.0 -11.4 fructose bisphosphate aldolase compare
Atu1845 -3.9 -4.8 phosphoribosylformylglycinamidine synthase I compare
Atu2747 -3.9 -7.6 hypothetical protein compare
Atu3143 -3.8 -7.1 hypothetical protein conserved
Atu0017 -3.6 -3.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1844 -3.6 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -3.6 -6.3 Phosphoribosylglycinamide synthetase compare
Atu1446 -3.5 -2.9 two component response regulator compare
Atu1686 -3.5 -13.4 peptidyl-prolyl cis-trans isomerse D compare
Atu0647 -3.5 -6.0 phosphoribosylamine--glycine ligase compare
Atu0298 -3.4 -6.4 orotidine 5 compare
Atu0030 -3.4 -2.0 phosphocarrier protein HPr compare
Atu1589 -3.4 -6.9 aminotransferase, class I compare
Atu0723 -3.4 -2.3 FAD dependent oxidoreductase compare
Atu3138 -3.3 -7.1 hypothetical protein compare
Atu3482 -3.2 -7.8 pantoate--beta-alanine ligase compare
Atu1456 -3.2 -10.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3483 -3.2 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3140 -3.2 -10.4 5-dehydro-4-deoxyglucarate dehydratase conserved
Atu1308 -3.1 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0777 -3.1 -1.3 hypothetical protein compare
Atu3133 -3.1 -7.9 sugar ABC transporter permease compare
Atu1620 -3.1 -9.9 triosephosphate isomerase compare
Atu1075 -3.1 -5.3 amidophosphoribosyltransferase compare
Atu0040 -3.0 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3139 -3.0 -9.4 hypothetical protein compare
Atu6098 -3.0 -0.9 transcriptional regulator, HTH family compare
Atu3784 -2.9 -17.8 glutamate synthase large subunit compare
Atu2015 -2.9 -8.2 aminotransferase compare
Atu4096 -2.8 -7.4 nicotinate-nucleotide pyrophosphorylase compare
Atu1455 -2.8 -2.6 hypothetical protein compare
Atu3783 -2.8 -13.0 glutamate synthase subunit beta compare
Atu1748 -2.8 -6.2 NIFU-like protein compare
Atu3343 -2.7 -6.1 trehalose utilization-like protein compare
Atu0703 -2.7 -2.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3755 -2.7 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4505 -2.7 -7.3 LacI family transcriptional regulator compare
Atu3763 -2.6 -2.4 hypothetical protein compare
Atu3131 -2.5 -8.5 sugar ABC transporter ATPase compare
Atu3731 -2.5 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3129 -2.5 -6.0 polygalacturonase-like protein compare
Atu1454 -2.5 -6.3 siroheme synthase compare
Atu0886 -2.5 -1.8 hypothetical protein compare
Atu4098 -2.5 -9.0 quinolinate synthetase compare
Atu3134 -2.4 -7.5 AraC family transcriptional regulator compare
Atu1140 -2.3 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4148 -2.3 -5.9 UDP-glucuronic acid epimerase compare
Atu0029 -2.3 -7.3 S-adenosylhomocysteine hydrolase compare
Atu2548 -2.2 -11.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu6112 -2.2 -3.2 conserved hypothetical protein compare
Atu1030 -2.2 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0035 -2.2 -8.6 phosphoenolpyruvate carboxykinase compare
Atu3219 -2.1 -8.2 dihydroxy-acid dehydratase compare
Atu1463 -2.1 -7.6 glycine cleavage system component H compare
Atu5045 -2.1 -2.0 hypothetical protein compare
Atu2067 -2.1 -1.0 hypothetical protein compare
Atu2115 -2.1 -6.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3130 -2.0 -5.0 sugar ABC transporter substrate-binding protein compare
Atu2790 -2.0 -1.3 3-isopropylmalate dehydratase, small subunit compare
Atu2155 -2.0 -11.1 methionine synthase compare
Atu6114 -2.0 -2.2 hypothetical protein compare
Atu4097 -2.0 -7.0 L-aspartate oxidase compare
Atu0842 -2.0 -2.5 hypothetical protein compare
Atu3469 -1.9 -2.9 phosphoglyceromutase compare
Atu0641 -1.9 -3.7 hypothetical protein compare
Atu1462 -1.8 -8.3 glycine cleavage system protein P2 compare
Atu2726 -1.8 -12.1 pyruvate carboxylase compare
Atu0031 -1.8 -1.5 PTS system, IIA component compare
Atu0346 -1.8 -2.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2205 -1.7 -3.9 transcriptional regulator, MarR family compare
Atu3132 -1.7 -6.2 sugar ABC transporter permease compare
Atu3289 -1.7 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu1464 -1.7 -4.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu1354 -1.6 -0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2591 -1.5 -5.4 glucosyltransferase compare
Atu6165 -1.4 -0.8 hypothetical protein compare
Atu1685 -1.4 -1.1 hypothetical protein compare
Atu4144 -1.4 -1.1 hypothetical protein compare
Atu0115 -1.4 -1.1 hypothetical protein compare
Atu8115 -1.4 -3.5 Hypothetical Protein compare
Atu2582 -1.3 -3.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4773 -1.3 -0.6 two component response regulator compare
Atu2057 -1.3 -1.6 DNA helicase II compare
Atu3128 -1.3 -5.0 di-trans,poly-cis-decaprenylcistransferase compare
Atu0189 -1.3 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5145 -1.3 -2.1 acetyltransferase compare
Atu1359 -1.3 -1.0 dnaK deletion suppressor protein compare
Atu3342 -1.3 -3.9 trehalose utilization-like protein compare
Atu6189 -1.3 -1.0 protein secretion chaperone compare
Atu0188 -1.2 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3468 -1.2 -0.8 hypothetical protein compare
Atu2801 -1.2 -2.6 precorrin-2 C20 methyltransferase compare
Atu5164 -1.2 -0.6 type IV secretion protein AvhB3 compare
Atu1846 -1.2 -1.4 hypothetical protein compare
Atu8099 -1.2 -1.7 hypothetical protein compare
Atu2569 -1.2 -6.8 thiamine biosynthesis protein compare
Atu1667 -1.2 -1.6 hypothetical protein compare
Atu5106 -1.2 -2.1 DNA binding protein compare
Atu1339 -1.1 -2.9 ribonuclease E compare
Atu3288 -1.1 -4.2 hydroxyethylthiazole kinase compare
Atu8052 -1.1 -0.9 hypothetical protein compare
Atu1062 -1.1 -1.5 phosphatidylserine synthase compare
Atu0322 -1.1 -3.1 enoyl CoA hydratase compare
Atu1028 -1.1 -1.9 hypothetical protein compare
Atu3999 -1.1 -1.7 dithiobiotin synthetase compare
Atu5513 -1.1 -0.9 cold shock protein compare
Atu0912 -1.1 -1.1 Na+/H+ antiporter compare
Atu4317 -1.1 -3.4 TetR family transcriptional regulator compare
Atu0368 -1.1 -3.2 tRNA pseudouridine synthase I compare
Atu6030 -1.1 -3.3 ORF13 hypothetical protein compare
Atu2376 -1.1 -1.0 hypothetical protein compare
Atu4072 -1.1 -1.5 nodulation protein N compare
Atu0091 -1.0 -5.1 MFS permease compare
Atu0488 -1.0 -2.7 hypothetical protein compare
Atu5167 -1.0 -2.8 type IV secretion protein AvhB6 compare
Atu0434 -1.0 -1.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4187 -1.0 -1.2 tRNA-Met compare
Atu2207 -1.0 -2.0 two component sensor kinase compare
Atu0677 -1.0 -1.2 hypothetical protein compare
Atu0894 -1.0 -1.8 ABC transporter, membrane spanning protein compare
Atu2433 -1.0 -0.9 hypothetical protein compare
Atu2125 -1.0 -0.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3290 -1.0 -3.9 phosphomethylpyrimidine kinase compare
Atu1419 -0.9 -3.0 transcriptional regulator, GntR family compare
Atu2795 -0.9 -3.8 cobalamin biosynthetic protein compare
Atu2809 -0.9 -4.2 cobalamin biosynthesis protein compare
Atu2442 -0.9 -2.0 hypothetical protein compare
Atu2439 -0.9 -0.7 hypothetical protein compare
Atu0291 -0.9 -4.0 hypothetical protein compare
Atu1874 -0.9 -2.5 RecA protein compare
Atu0690 -0.9 -2.1 hypothetical protein compare
Atu2633 -0.9 -1.2 RhtB family transporter compare
Atu3750 -0.9 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu0846 -0.9 -2.6 transcriptional regulator, MarR family compare
Atu0572 -0.9 -2.0 hypothetical protein compare
Atu1891 -0.9 -1.8 cobalamin biosynthesis protein compare
Atu2657 -0.9 -2.0 hypothetical protein compare
Atu0876 -0.8 -1.0 superoxide dismutase compare
Atu0354 -0.8 -1.3 ferric uptake regulator compare
Atu8088 -0.8 -1.2 hypothetical protein compare
Atu1801 -0.8 -2.0 hypothetical protein compare
Atu0744 -0.8 -2.1 hypothetical protein compare
Atu0277 -0.8 -3.2 hypothetical protein compare
Atu2201 -0.8 -1.5 hydrolase compare
Atu5047 -0.8 -1.4 hypothetical protein compare
Atu2804 -0.8 -4.2 cobaltochelatase subunit compare
Atu2484 -0.8 -0.9 hypothetical protein compare
Atu3732 -0.8 -3.6 hemolysin compare
Atu4409 -0.8 -2.3 periplasmic nitrate reductase small subunit compare
Atu2020 -0.8 -2.4 transcriptional regulator, TetR family compare
Atu3423 -0.8 -1.2 hypothetical protein compare
Atu0331 -0.8 -1.6 sigma-54 modulation protein compare
Atu2802 -0.8 -2.8 precorrin-8X methylmutase compare
Atu1457 -0.8 -1.2 hypothetical protein compare
Atu8158 -0.8 -1.4 hypothetical protein compare
Atu3997 -0.8 -4.7 biotin synthetase compare
Atu4077 -0.8 -3.9 glycogen branching protein compare
Atu2827 -0.8 -2.9 hypothetical protein compare
Atu1445 -0.8 -2.0 two component sensor kinase compare
Atu4346 -0.8 -3.4 hypothetical protein compare
Atu2821 -0.8 -2.1 transcriptional regulator, GntR family compare
Atu4232 -0.7 -2.1 GntR family transcriptional regulator compare
Atu6119 -0.7 -1.6 conserved hypothetical protein compare
Atu1285 -0.7 -3.3 metal dependent hydrolase compare
Atu0141 -0.7 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu8087 -0.7 -0.5 putative peptidoglycan binding protein compare
Atu0536 -0.7 -2.7 hypothetical protein compare
Atu0503 -0.7 -5.2 enoyl-CoA hydratase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Rhamnogalacturonan - from potato in Agrobacterium fabrum C58

For carbon source Rhamnogalacturonan - from potato across organisms