Experiment set2IT086 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Sodium Chloride 400 mM

200 most important genes:

  gene name fitness t score description  
PfGW456L13_1233 -4.4 -4.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_4165 -3.6 -5.8 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_656 -3.2 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_854 -3.1 -4.3 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_4254 -2.9 -9.7 FIG00955360: hypothetical protein compare
PfGW456L13_1749 -2.9 -6.0 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_4859 -2.9 -5.6 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_845 -2.8 -10.1 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_275 -2.8 -3.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_1824 -2.7 -3.1 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_1368 -2.6 -6.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_1735 -2.6 -5.1 Glycerol uptake facilitator protein compare
PfGW456L13_4038 -2.5 -4.0 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_594 -2.5 -6.3 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_5150 -2.5 -3.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_157 -2.5 -3.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
PfGW456L13_4668 -2.4 -7.2 RecA protein compare
PfGW456L13_5086 -2.4 -5.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_1860 -2.3 -7.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
PfGW456L13_427 -2.2 -2.5 Two-component system response regulator OmpR compare
PfGW456L13_1236 -2.2 -11.1 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_498 -2.2 -2.0 hypothetical protein compare
PfGW456L13_751 -2.1 -5.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_140 -2.0 -5.1 FIG003573: hypothetical protein compare
PfGW456L13_1198 -2.0 -4.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
PfGW456L13_772 -1.9 -6.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_1603 -1.9 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_793 -1.8 -2.9 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_4451 -1.7 -5.5 ATP-dependent RNA helicase SrmB compare
PfGW456L13_4346 -1.7 -4.7 Hpt domain protein compare
PfGW456L13_1363 -1.7 -4.9 Rare lipoprotein A precursor compare
PfGW456L13_2554 -1.7 -7.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_4207 -1.7 -6.7 Periplasmic protease compare
PfGW456L13_59 -1.7 -6.7 Sensor histidine kinase/response regulator compare
PfGW456L13_1853 -1.7 -2.8 Holliday junction DNA helicase RuvB compare
PfGW456L13_2651 -1.6 -3.9 Cell division protein FtsK compare
PfGW456L13_1852 -1.6 -6.9 Holliday junction DNA helicase RuvA compare
PfGW456L13_990 -1.6 -2.7 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
PfGW456L13_354 -1.6 -8.8 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP compare
PfGW456L13_2109 -1.5 -9.6 FIG004453: protein YceG like compare
PfGW456L13_4834 -1.5 -2.3 FIG137478: Hypothetical protein compare
PfGW456L13_144 -1.5 -5.2 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_2237 -1.4 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_2011 -1.4 -5.9 Transcriptional regulatory protein PhoP compare
PfGW456L13_773 -1.4 -5.8 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_149 -1.4 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
PfGW456L13_5006 -1.4 -2.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_913 -1.3 -5.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_995 -1.3 -9.9 Cell division protein FtsX compare
PfGW456L13_4424 -1.3 -4.6 FIG00953416: hypothetical protein compare
PfGW456L13_2436 -1.3 -4.0 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_1642 -1.3 -5.6 LppC putative lipoprotein compare
PfGW456L13_2981 -1.3 -2.3 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
PfGW456L13_1523 -1.2 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
PfGW456L13_4842 -1.2 -2.8 Translation elongation factor LepA compare
PfGW456L13_276 -1.2 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_994 -1.2 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
PfGW456L13_2650 -1.2 -5.0 Thioredoxin reductase (EC 1.8.1.9) compare
PfGW456L13_644 -1.2 -6.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_1863 -1.2 -5.8 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_332 -1.2 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_5067 -1.2 -6.4 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_1982 -1.1 -2.2 Carbon storage regulator compare
PfGW456L13_1574 -1.1 -2.8 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_3704 -1.1 -3.2 Transcriptional regulator RpiR in protein degradation cluster compare
PfGW456L13_50 -1.1 -5.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_2256 -1.1 -7.9 sensor histidine kinase/response regulator compare
PfGW456L13_4155 -1.1 -4.9 Spermidine synthase (EC 2.5.1.16) compare
PfGW456L13_2648 -1.1 -5.2 Arginine-tRNA-protein transferase (EC 2.3.2.8) compare
PfGW456L13_5031 -1.0 -2.9 Rod shape-determining protein MreD compare
PfGW456L13_1784 -1.0 -2.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_1545 -1.0 -5.5 Paraquat-inducible protein A compare
PfGW456L13_2010 -1.0 -5.5 outer membrane protein H1 compare
PfGW456L13_1453 -1.0 -6.9 Glutathione-regulated potassium-efflux system ATP-binding protein compare
PfGW456L13_1082 -1.0 -7.2 Choline dehydrogenase (EC 1.1.99.1) compare
PfGW456L13_1472 -1.0 -2.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
PfGW456L13_430 -1.0 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_931 -1.0 -5.9 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
PfGW456L13_1528 -1.0 -1.1 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_890 -1.0 -4.9 FIG006231: RNA-binding protein compare
PfGW456L13_1606 -1.0 -6.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_5028 -0.9 -7.7 FIG005080: Possible exported protein compare
PfGW456L13_1936 -0.9 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PfGW456L13_44 -0.9 -4.2 Translation initiation factor SUI1-related protein compare
PfGW456L13_2176 -0.9 -3.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_2556 -0.9 -1.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_2221 -0.9 -6.8 ErfK/YbiS/YcfS/YnhG family protein compare
PfGW456L13_426 -0.9 -4.8 Osmolarity sensory histidine kinase EnvZ compare
PfGW456L13_3556 -0.9 -2.7 hypothetical protein compare
PfGW456L13_4807 -0.9 -7.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_2035 -0.9 -5.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
PfGW456L13_4595 -0.9 -2.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_4946 -0.9 -1.6 hypothetical protein compare
PfGW456L13_4026 -0.9 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
PfGW456L13_1382 -0.9 -4.0 FOG: TPR repeat, SEL1 subfamily compare
PfGW456L13_2559 -0.9 -5.0 Hydrolase, carbon-nitrogen family compare
PfGW456L13_1219 -0.9 -3.4 hypothetical protein compare
PfGW456L13_875 -0.8 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_1226 -0.8 -6.5 S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A compare
PfGW456L13_172 -0.8 -5.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_2931 -0.8 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
PfGW456L13_1889 -0.8 -2.2 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_2646 -0.8 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PfGW456L13_2602 -0.8 -5.3 putative exported protein compare
PfGW456L13_4012 -0.8 -1.3 VacJ-like lipoprotein precursor compare
PfGW456L13_1851 -0.8 -2.2 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
PfGW456L13_1083 -0.8 -4.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
PfGW456L13_779 -0.8 -5.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_1312 -0.8 -2.9 Ribonucleotide reductase transcriptional regulator NrdR compare
PfGW456L13_4239 -0.8 -1.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
PfGW456L13_724 -0.8 -6.4 ATP-dependent DNA helicase UvrD/PcrA compare
PfGW456L13_1498 -0.8 -0.8 FIG060329: MOSC domain protein compare
PfGW456L13_2552 -0.8 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_4042 -0.8 -2.5 FIG00953628: hypothetical protein compare
PfGW456L13_69 -0.8 -1.0 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
PfGW456L13_932 -0.8 -3.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
PfGW456L13_3945 -0.8 -5.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
PfGW456L13_2034 -0.8 -1.7 hypothetical protein compare
PfGW456L13_491 -0.8 -5.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
PfGW456L13_151 -0.8 -2.3 HflC protein compare
PfGW456L13_1948 -0.7 -1.9 Transcriptional regulator, LysR family compare
PfGW456L13_453 -0.7 -2.5 Methionine ABC transporter ATP-binding protein compare
PfGW456L13_2601 -0.7 -6.0 Uncharacterized protein YtfM precursor compare
PfGW456L13_4033 -0.7 -1.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
PfGW456L13_2385 -0.7 -1.4 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_2538 -0.7 -1.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
PfGW456L13_4022 -0.7 -2.2 FIG00953243: hypothetical protein compare
PfGW456L13_5112 -0.7 -1.3 tmRNA-binding protein SmpB compare
PfGW456L13_757 -0.7 -1.6 Phosphate transport system regulatory protein PhoU compare
PfGW456L13_5152 -0.7 -2.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
PfGW456L13_1238 -0.7 -2.6 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
PfGW456L13_630 -0.7 -2.2 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
PfGW456L13_2636 -0.7 -3.2 FIG002776: hypothetical protein compare
PfGW456L13_3442 -0.7 -2.0 hypothetical protein compare
PfGW456L13_1639 -0.7 -2.7 21 kDa hemolysin precursor compare
PfGW456L13_1370 -0.7 -1.8 FIG00957593: hypothetical protein compare
PfGW456L13_930 -0.7 -4.4 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
PfGW456L13_4641 -0.7 -1.1 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_4162 -0.7 -1.4 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
PfGW456L13_3919 -0.7 -3.8 Probable transmembrane protein compare
PfGW456L13_2281 -0.7 -1.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
PfGW456L13_2816 -0.7 -1.2 Various polyols ABC transporter, ATP-binding component compare
PfGW456L13_4354 -0.7 -1.7 Flagellar hook-basal body complex protein FliE compare
PfGW456L13_1813 -0.6 -3.7 Pyruvate kinase (EC 2.7.1.40) compare
PfGW456L13_1977 -0.6 -3.6 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) compare
PfGW456L13_770 -0.6 -1.6 Superfamily II DNA and RNA helicases compare
PfGW456L13_1911 -0.6 -4.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
PfGW456L13_2699 -0.6 -2.0 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_1473 -0.6 -2.9 Conserved uncharacterized protein CreA compare
PfGW456L13_5082 -0.6 -2.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
PfGW456L13_672 -0.6 -2.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
PfGW456L13_2656 -0.6 -3.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
PfGW456L13_858 -0.6 -2.4 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
PfGW456L13_4236 -0.6 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
PfGW456L13_361 -0.6 -4.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
PfGW456L13_3136 -0.6 -2.3 putative membrane protein compare
PfGW456L13_1344 -0.6 -2.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
PfGW456L13_2492 -0.6 -1.6 Virulence factor mviM compare
PfGW456L13_308 -0.6 -2.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
PfGW456L13_477 -0.6 -0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
PfGW456L13_3572 -0.6 -2.2 FIG035246: DoxX family protein compare
PfGW456L13_2868 -0.6 -1.6 hypothetical protein compare
PfGW456L13_5105 -0.6 -1.7 hypothetical protein compare
PfGW456L13_1972 -0.6 -1.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_4828 -0.6 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_3913 -0.6 -2.9 FIG00953132: hypothetical protein compare
PfGW456L13_4863 -0.6 -1.2 FIG021952: putative membrane protein compare
PfGW456L13_5017 -0.6 -1.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
PfGW456L13_4512 -0.6 -3.1 Exported zinc metalloprotease YfgC precursor compare
PfGW456L13_1281 -0.6 -4.3 Catalase (EC 1.11.1.6) compare
PfGW456L13_2547 -0.6 -2.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_1552 -0.6 -1.1 Phosphotransferase system, HPr-related proteins compare
PfGW456L13_4518 -0.6 -2.4 FIG00955375: hypothetical protein compare
PfGW456L13_2645 -0.6 -2.5 ATP-dependent Clp protease adaptor protein ClpS compare
PfGW456L13_4981 -0.6 -1.1 Type III effector HopPmaJ compare
PfGW456L13_1017 -0.6 -1.7 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
PfGW456L13_1084 -0.6 -2.5 HTH-type transcriptional regulator BetI compare
PfGW456L13_4330 -0.6 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
PfGW456L13_4319 -0.6 -1.5 FlhB domain protein compare
PfGW456L13_5038 -0.6 -3.0 K+-dependent Na+/Ca+ exchanger related-protein compare
PfGW456L13_943 -0.6 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_3894 -0.6 -0.7 Integration host factor alpha subunit compare
PfGW456L13_3308 -0.6 -2.9 Exonuclease SbcC compare
PfGW456L13_767 -0.6 -2.6 Rubredoxin compare
PfGW456L13_4667 -0.6 -1.5 Regulatory protein RecX compare
PfGW456L13_4819 -0.6 -3.2 ABC-type sugar transport systems, ATPase components compare
PfGW456L13_155 -0.6 -2.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
PfGW456L13_1151 -0.6 -3.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
PfGW456L13_2810 -0.6 -3.5 Oxidoreductase compare
PfGW456L13_3497 -0.5 -1.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_715 -0.5 -3.6 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
PfGW456L13_1467 -0.5 -3.5 Alkylphosphonate utilization operon protein PhnA compare
PfGW456L13_3936 -0.5 -2.9 Colicin V production protein compare
PfGW456L13_562 -0.5 -2.9 Holliday junction resolvasome, helicase subunit compare
PfGW456L13_3947 -0.5 -1.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
PfGW456L13_2592 -0.5 -1.4 hypothetical protein compare
PfGW456L13_3920 -0.5 -2.8 Carbonic anhydrase (EC 4.2.1.1) compare
PfGW456L13_2620 -0.5 -1.0 Glutamine amidotransferase class-I (EC 6.3.5.2) compare
PfGW456L13_4400 -0.5 -4.4 Aromatic amino acid transport protein AroP compare
PfGW456L13_4171 -0.5 -1.6 FIG00956876: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens GW456-L13

For stress Sodium Chloride across organisms