Experiment set2IT086 for Agrobacterium fabrum C58

Compare to:

Rhamnogalacturonan - from potato carbon source

200 most important genes:

  gene name fitness t score description  
Atu0099 -7.0 -8.0 prephenate dehydratase compare
Atu0432 -6.9 -9.4 O-succinylhomoserine sulfhydrylase compare
Atu2791 -6.5 -7.8 3-isopropylmalate dehydrogenase compare
Atu2036 -6.5 -13.2 acetolactate synthase III, large subunit compare
Atu2709 -6.0 -18.3 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -5.8 -5.7 indole-3-glycerol-phosphate synthase compare
Atu2289 -5.5 -16.8 anthranilate synthase component I and II compare
Atu1845 -5.4 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu3885 -5.4 -9.6 inositol monophosphatase compare
Atu3706 -5.4 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu0703 -5.3 -4.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3707 -5.3 -4.7 phosphoserine aminotransferase compare
Atu2264 -5.3 -14.0 2-isopropylmalate synthase compare
Atu2790 -5.2 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu0400 -5.2 -4.7 orotate phosphoribosyltransferase compare
Atu0043 -5.1 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu1687 -5.1 -11.7 anthranilate phosphoribosyltransferase compare
Atu2747 -5.1 -11.3 hypothetical protein compare
Atu0769 -5.0 -3.0 protoheme IX farnesyltransferase compare
Atu0041 -5.0 -2.9 glutamine amidotransferase compare
Atu2040 -5.0 -5.9 phosphoserine phosphatase compare
Atu0039 -4.9 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu2718 -4.8 -9.4 homoserine O-succinyltransferase compare
Atu1030 -4.8 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1205 -4.7 -12.2 threonine dehydratase compare
Atu0647 -4.7 -6.4 phosphoribosylamine--glycine ligase compare
Atu0537 -4.6 -8.8 histidinol dehydrogenase compare
Atu0030 -4.5 -1.9 phosphocarrier protein HPr compare
Atu1075 -4.5 -7.1 amidophosphoribosyltransferase compare
Atu1446 -4.4 -3.6 two component response regulator compare
Atu3755 -4.4 -5.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0038 -4.4 -4.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3139 -4.3 -12.7 hypothetical protein compare
Atu2650 -4.2 -9.0 glycerol-3-phosphate dehydrogenase compare
Atu3763 -4.2 -2.5 hypothetical protein compare
Atu0678 -4.2 -7.8 histidyl-tRNA synthetase compare
Atu1686 -4.1 -14.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1844 -4.1 -4.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1588 -3.9 -6.3 homoserine dehydrogenase compare
Atu1307 -3.9 -5.2 dihydroorotase compare
Atu3754 -3.9 -6.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3740 -3.8 -10.0 fructose bisphosphate aldolase compare
Atu0679 -3.8 -6.6 ATP phosphoribosyltransferase compare
Atu1454 -3.8 -9.1 siroheme synthase compare
Atu0486 -3.7 -4.3 dihydroorotate dehydrogenase compare
Atu1141 -3.6 -7.7 Phosphoribosylglycinamide synthetase compare
Atu3140 -3.5 -8.2 5-dehydro-4-deoxyglucarate dehydratase conserved
Atu2015 -3.5 -9.7 aminotransferase compare
Atu1850 -3.4 -4.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1140 -3.4 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0723 -3.4 -2.2 FAD dependent oxidoreductase compare
Atu0399 -3.4 -6.8 dihydroorotase compare
Atu4096 -3.3 -7.9 nicotinate-nucleotide pyrophosphorylase compare
Atu1750 -3.2 -2.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu3143 -3.2 -8.7 hypothetical protein conserved
Atu3731 -3.1 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu1589 -3.1 -7.9 aminotransferase, class I compare
Atu3468 -3.1 -1.3 hypothetical protein compare
Atu3483 -3.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3784 -3.1 -18.0 glutamate synthase large subunit compare
Atu4148 -3.1 -8.7 UDP-glucuronic acid epimerase compare
Atu0298 -3.1 -6.3 orotidine 5 compare
Atu3783 -3.0 -12.3 glutamate synthase subunit beta compare
Atu0040 -3.0 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3482 -3.0 -6.4 pantoate--beta-alanine ligase compare
Atu1456 -2.9 -9.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4098 -2.9 -8.0 quinolinate synthetase compare
Atu3138 -2.9 -6.9 hypothetical protein compare
Atu1620 -2.8 -10.2 triosephosphate isomerase compare
Atu4505 -2.8 -8.8 LacI family transcriptional regulator compare
Atu1308 -2.7 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3134 -2.5 -7.5 AraC family transcriptional regulator compare
Atu3131 -2.5 -10.3 sugar ABC transporter ATPase compare
Atu5142 -2.4 -2.1 hypothetical protein compare
Atu1748 -2.4 -8.0 NIFU-like protein compare
Atu3133 -2.4 -6.9 sugar ABC transporter permease compare
Atu3130 -2.4 -6.5 sugar ABC transporter substrate-binding protein compare
Atu0115 -2.4 -1.4 hypothetical protein compare
Atu2439 -2.3 -1.6 hypothetical protein compare
Atu2115 -2.3 -6.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3219 -2.3 -8.6 dihydroxy-acid dehydratase compare
Atu2155 -2.3 -14.1 methionine synthase compare
Atu1359 -2.3 -1.3 dnaK deletion suppressor protein compare
Atu1463 -2.2 -4.7 glycine cleavage system component H compare
Atu3739 -2.1 -3.3 phosphoglycerate kinase compare
Atu0035 -2.1 -7.3 phosphoenolpyruvate carboxykinase compare
Atu2548 -2.1 -10.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4217 -2.1 -2.0 TetR family transcriptional regulator compare
Atu3129 -2.0 -6.9 polygalacturonase-like protein compare
Atu4097 -2.0 -7.8 L-aspartate oxidase compare
Atu0029 -2.0 -5.0 S-adenosylhomocysteine hydrolase compare
Atu1464 -2.0 -5.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu2684 -2.0 -2.3 hypothetical protein compare
Atu2368 -1.9 -1.4 hypothetical protein compare
Atu2726 -1.9 -11.3 pyruvate carboxylase compare
Atu4773 -1.8 -0.9 two component response regulator compare
Atu1685 -1.8 -1.2 hypothetical protein compare
Atu3132 -1.8 -4.6 sugar ABC transporter permease compare
Atu0953 -1.7 -1.2 hypothetical protein compare
Atu0026 -1.7 -1.0 hypothetical protein compare
Atu3730 -1.7 -1.2 hypothetical protein compare
Atu2800 -1.6 -2.7 precorrin-3B C17-methyltransferase compare
Atu2582 -1.6 -3.8 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1462 -1.5 -7.0 glycine cleavage system protein P2 compare
Atu2801 -1.5 -3.3 precorrin-2 C20 methyltransferase compare
Atu1714 -1.5 -1.6 exonuclease III compare
Atu2662 -1.5 -1.5 acetyltransferase compare
Atu0795 -1.5 -1.7 hypothetical protein compare
Atu3343 -1.5 -5.1 trehalose utilization-like protein compare
Atu0641 -1.4 -3.2 hypothetical protein compare
Atu1810 -1.4 -1.2 hypothetical protein compare
Atu8115 -1.4 -3.3 Hypothetical Protein compare
Atu2207 -1.4 -4.5 two component sensor kinase compare
Atu1455 -1.4 -2.2 hypothetical protein compare
Atu4502 -1.4 -5.8 cobalamin synthesis protein compare
Atu0031 -1.4 -1.3 PTS system, IIA component compare
Atu2249 -1.3 -1.0 hypothetical protein compare
Atu0912 -1.3 -1.2 Na+/H+ antiporter compare
Atu3469 -1.3 -2.0 phosphoglyceromutase compare
Atu2020 -1.3 -2.2 transcriptional regulator, TetR family compare
Atu3342 -1.3 -3.2 trehalose utilization-like protein compare
Atu8052 -1.3 -1.0 hypothetical protein compare
Atu0319 -1.3 -1.3 ubiquinone biosynthesis protein compare
Atu2205 -1.3 -3.7 transcriptional regulator, MarR family compare
Atu1439 -1.3 -1.9 hypothetical protein compare
Atu3128 -1.2 -6.1 di-trans,poly-cis-decaprenylcistransferase compare
Atu8138 -1.2 -1.0 hypothetical protein compare
Atu1457 -1.2 -1.3 hypothetical protein compare
Atu4616 -1.1 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu3290 -1.1 -4.9 phosphomethylpyrimidine kinase compare
Atu3289 -1.1 -2.6 thiamine-phosphate pyrophosphorylase compare
Atu3732 -1.1 -4.9 hemolysin compare
Atu3727 -1.1 -2.6 hypothetical protein compare
Atu2803 -1.1 -2.6 Cobalamin biosynthesis associated protein compare
Atu1847 -1.1 -1.7 hypothetical protein compare
Atu0536 -1.1 -3.9 hypothetical protein compare
Atu3461 -1.1 -1.6 GntR family transcriptional regulator compare
Atu2569 -1.1 -5.9 thiamine biosynthesis protein compare
Atu3121 -1.0 -0.9 cold shock protein compare
Atu0842 -1.0 -1.5 hypothetical protein compare
Atu5475 -1.0 -1.0 hypothetical protein compare
Atu1573 -1.0 -1.1 hypothetical protein compare
Atu0322 -1.0 -3.3 enoyl CoA hydratase compare
Atu5043 -1.0 -1.6 hypothetical protein compare
Atu1417 -1.0 -3.8 enoyl-CoA hydratase compare
Atu3288 -0.9 -3.3 hydroxyethylthiazole kinase compare
Atu4173 -0.9 -1.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu0025 -0.9 -2.0 hypothetical protein compare
Atu4053 -0.9 -1.0 succinoglycan biosynthesis protein compare
Atu8099 -0.9 -1.6 hypothetical protein compare
Atu2793 -0.9 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu6133 -0.9 -2.2 conserved hypothetical protein compare
Atu1725 -0.9 -2.4 hypothetical protein compare
Atu2795 -0.9 -3.1 cobalamin biosynthetic protein compare
Atu1077 -0.9 -2.3 DNA repair protein compare
Atu0331 -0.9 -1.6 sigma-54 modulation protein compare
Atu3510 -0.9 -1.8 amidohydrolase compare
Atu0086 -0.9 -0.8 ribosome-binding factor A compare
Atu8046 -0.9 -1.5 hypothetical protein compare
Atu6114 -0.9 -1.5 hypothetical protein compare
Atu1475 -0.9 -1.1 hypothetical protein compare
Atu0434 -0.9 -1.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2452 -0.9 -1.5 hypothetical protein compare
Atu1470 -0.8 -0.5 Camphor resistance protein compare
Atu5061 -0.8 -1.2 glycerophosphoryl diester phosphodiesterase compare
Atu1542 -0.8 -2.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1490 -0.8 -1.4 arsenate reductase compare
Atu0147 -0.8 -2.7 hypothetical protein compare
Atu4213 -0.8 -1.9 hypothetical protein compare
Atu3598 -0.8 -1.4 thiol:disulfide interchange protein compare
Atu1469 -0.8 -1.4 hypothetical protein compare
Atu4061 -0.8 -1.8 exopolysaccharide production repressor protein compare
Atu5046 -0.8 -1.6 hypothetical protein compare
Atu0091 -0.8 -3.8 MFS permease compare
Atu5486 -0.8 -2.8 hypothetical protein compare
Atu0354 -0.8 -1.4 ferric uptake regulator compare
Atu4567 -0.8 -2.5 ROK family transcriptional regulator compare
Atu1952 -0.8 -1.0 hypothetical protein compare
Atu2591 -0.8 -3.2 glucosyltransferase compare
Atu0291 -0.8 -3.4 hypothetical protein compare
Atu1577 -0.8 -2.7 ABC transporter, substrate binding protein (amino acid) compare
Atu2794 -0.8 -2.6 uroporphyrin-III C-methyltransferase compare
Atu3644 -0.8 -1.2 hypothetical protein compare
Atu0876 -0.8 -1.3 superoxide dismutase compare
Atu2799 -0.8 -1.5 precorrin-6x reductase compare
Atu2217 -0.8 -3.3 hypothetical protein compare
Atu1042 -0.8 -2.7 hypothetical protein compare
Atu8047 -0.7 -1.2 hypothetical protein compare
Atu5464 -0.7 -2.9 IclR family transcriptional regulator compare
Atu4346 -0.7 -3.2 hypothetical protein compare
Atu3113 -0.7 -4.2 sugar ABC transporter permease compare
Atu5498 -0.7 -2.4 oxidoreductase with iron-sulfur subunit compare
Atu5125 -0.7 -1.7 GntR family transcriptional regulator compare
Atu0690 -0.7 -1.6 hypothetical protein compare
Atu8181 -0.7 -1.4 hypothetical protein compare
Atu5485 -0.7 -1.1 hypothetical protein compare
Atu6156 -0.7 -1.7 virA/G regulated gene compare
Atu4779 -0.7 -1.1 hypothetical protein compare
Atu3663 -0.7 -0.9 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Rhamnogalacturonan - from potato in Agrobacterium fabrum C58

For carbon source Rhamnogalacturonan - from potato across organisms