Experiment set2IT085 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
PfGW456L13_793 -4.7 -4.6 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_1642 -4.5 -8.5 LppC putative lipoprotein compare
PfGW456L13_1860 -4.1 -10.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
PfGW456L13_4165 -3.6 -5.8 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_4513 -3.4 -4.6 HtrA protease/chaperone protein compare
PfGW456L13_4859 -3.4 -5.1 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_3996 -3.3 -10.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
PfGW456L13_3999 -3.1 -8.2 N-acetylmannosaminyltransferase (EC 2.4.1.187) compare
PfGW456L13_3995 -3.0 -12.6 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
PfGW456L13_4207 -3.0 -8.7 Periplasmic protease compare
PfGW456L13_282 -3.0 -16.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
PfGW456L13_1368 -2.8 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_994 -2.8 -3.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
PfGW456L13_1236 -2.8 -12.5 Cell wall endopeptidase, family M23/M37 compare
PfGW456L13_2109 -2.7 -14.1 FIG004453: protein YceG like compare
PfGW456L13_157 -2.7 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
PfGW456L13_1655 -2.6 -3.5 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_1233 -2.6 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_656 -2.6 -4.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_354 -2.4 -12.2 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP compare
PfGW456L13_854 -2.4 -4.1 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_2554 -2.4 -9.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
PfGW456L13_276 -2.4 -2.1 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_772 -2.3 -6.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
PfGW456L13_990 -2.3 -2.8 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
PfGW456L13_995 -2.3 -14.7 Cell division protein FtsX conserved
PfGW456L13_2556 -2.2 -3.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_5150 -2.2 -3.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_59 -2.2 -7.5 Sensor histidine kinase/response regulator compare
PfGW456L13_1852 -2.2 -7.7 Holliday junction DNA helicase RuvA compare
PfGW456L13_1735 -2.2 -3.4 Glycerol uptake facilitator protein compare
PfGW456L13_773 -2.1 -6.1 Hydrogen peroxide-inducible genes activator compare
PfGW456L13_845 -2.0 -7.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_594 -2.0 -5.2 DNA polymerase I (EC 2.7.7.7) compare
PfGW456L13_1363 -1.9 -3.4 Rare lipoprotein A precursor compare
PfGW456L13_1749 -1.9 -5.7 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_2981 -1.9 -2.9 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
PfGW456L13_2553 -1.9 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_4254 -1.9 -8.1 FIG00955360: hypothetical protein compare
PfGW456L13_2237 -1.9 -2.3 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_4842 -1.9 -3.6 Translation elongation factor LepA compare
PfGW456L13_2651 -1.9 -2.7 Cell division protein FtsK compare
PfGW456L13_4516 -1.8 -9.9 RNA polymerase sigma-H factor AlgT compare
PfGW456L13_4581 -1.8 -12.7 RND efflux system, inner membrane transporter CmeB compare
PfGW456L13_1639 -1.8 -4.7 21 kDa hemolysin precursor compare
PfGW456L13_2969 -1.8 -3.1 FIG00956898: hypothetical protein compare
PfGW456L13_4582 -1.8 -7.0 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_3997 -1.7 -3.1 hypothetical protein compare
PfGW456L13_1853 -1.7 -3.1 Holliday junction DNA helicase RuvB compare
PfGW456L13_50 -1.7 -7.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_4863 -1.7 -3.0 FIG021952: putative membrane protein compare
PfGW456L13_4580 -1.7 -8.1 Multidrug efflux RND membrane fusion protein MexC compare
PfGW456L13_2636 -1.7 -6.6 FIG002776: hypothetical protein compare
PfGW456L13_4668 -1.7 -5.2 RecA protein compare
PfGW456L13_953 -1.7 -11.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_1625 -1.6 -3.3 FIG00958649: hypothetical protein compare
PfGW456L13_2012 -1.6 -8.4 Sensor protein PhoQ (EC 2.7.13.3) compare
PfGW456L13_1337 -1.6 -8.8 DedA protein compare
PfGW456L13_3845 -1.6 -1.7 Predicted secretion system X transmembrane protein 1 compare
PfGW456L13_2184 -1.6 -5.5 putative polysaccharide polymerase compare
PfGW456L13_4213 -1.6 -7.6 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) conserved
PfGW456L13_2034 -1.5 -2.5 hypothetical protein compare
PfGW456L13_3937 -1.5 -2.9 DedD protein compare
PfGW456L13_1606 -1.5 -10.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_3994 -1.5 -9.5 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
PfGW456L13_724 -1.5 -11.2 ATP-dependent DNA helicase UvrD/PcrA compare
PfGW456L13_5006 -1.5 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_468 -1.5 -2.4 FIG00953394: hypothetical protein compare
PfGW456L13_3993 -1.4 -4.6 Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48) compare
PfGW456L13_893 -1.4 -5.5 Z-ring-associated protein ZapA conserved
PfGW456L13_644 -1.4 -5.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_952 -1.4 -4.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
PfGW456L13_4961 -1.4 -5.5 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_890 -1.3 -5.9 FIG006231: RNA-binding protein conserved
PfGW456L13_5031 -1.3 -4.0 Rod shape-determining protein MreD compare
PfGW456L13_1824 -1.3 -1.6 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_1643 -1.3 -4.7 rRNA small subunit methyltransferase I compare
PfGW456L13_2552 -1.3 -5.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_1382 -1.3 -5.0 FOG: TPR repeat, SEL1 subfamily compare
PfGW456L13_1528 -1.3 -1.5 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_1603 -1.3 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_2035 -1.2 -6.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
PfGW456L13_5062 -1.2 -4.5 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
PfGW456L13_4678 -1.2 -3.1 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_2650 -1.2 -4.6 Thioredoxin reductase (EC 1.8.1.9) compare
PfGW456L13_274 -1.2 -8.3 DamX, an inner membrane protein involved in bile resistance compare
PfGW456L13_1851 -1.2 -2.9 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
PfGW456L13_874 -1.2 -9.7 Polyphosphate kinase (EC 2.7.4.1) compare
PfGW456L13_2941 -1.2 -2.3 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_226 -1.1 -3.1 FIG00959437: hypothetical protein compare
PfGW456L13_2920 -1.1 -1.8 FIG00962345: hypothetical protein compare
PfGW456L13_427 -1.1 -1.4 Two-component system response regulator OmpR compare
PfGW456L13_5086 -1.1 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_842 -1.1 -4.8 Tyrosine recombinase XerC compare
PfGW456L13_4074 -1.1 -4.6 Recombination protein RecR compare
PfGW456L13_4946 -1.1 -2.3 hypothetical protein compare
PfGW456L13_275 -1.1 -1.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_5060 -1.0 -3.4 Peptide chain release factor 3 compare
PfGW456L13_1535 -1.0 -8.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
PfGW456L13_5008 -1.0 -1.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_852 -1.0 -1.7 FIG00954215: hypothetical protein compare
PfGW456L13_2186 -1.0 -3.4 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
PfGW456L13_2084 -1.0 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_3055 -1.0 -4.0 TPR domain protein compare
PfGW456L13_3311 -1.0 -1.5 hypothetical protein compare
PfGW456L13_4451 -1.0 -3.7 ATP-dependent RNA helicase SrmB compare
PfGW456L13_3936 -1.0 -4.7 Colicin V production protein compare
PfGW456L13_1370 -1.0 -3.3 FIG00957593: hypothetical protein compare
PfGW456L13_2385 -1.0 -1.2 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_1721 -1.0 -5.0 Tyrosine recombinase XerD compare
PfGW456L13_1238 -0.9 -1.6 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
PfGW456L13_426 -0.9 -6.0 Osmolarity sensory histidine kinase EnvZ compare
PfGW456L13_591 -0.9 -4.4 Cytochrome c4 compare
PfGW456L13_4838 -0.9 -4.5 DNA recombination and repair protein RecO compare
PfGW456L13_4998 -0.9 -5.7 Outer membrane stress sensor protease DegS compare
PfGW456L13_201 -0.9 -3.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
PfGW456L13_1574 -0.9 -2.5 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_1108 -0.9 -2.5 hypothetical protein compare
PfGW456L13_858 -0.9 -2.9 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
PfGW456L13_5018 -0.9 -4.1 Phosphocarrier protein, nitrogen regulation associated compare
PfGW456L13_4031 -0.9 -2.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
PfGW456L13_4041 -0.9 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
PfGW456L13_2436 -0.9 -3.3 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_3931 -0.9 -1.2 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
PfGW456L13_751 -0.9 -3.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_4679 -0.9 -3.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
PfGW456L13_213 -0.9 -7.3 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
PfGW456L13_2095 -0.9 -1.6 Ribonuclease E (EC 3.1.26.12) compare
PfGW456L13_1281 -0.9 -6.5 Catalase (EC 1.11.1.6) compare
PfGW456L13_3341 -0.9 -4.8 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
PfGW456L13_1020 -0.9 -4.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_2190 -0.9 -2.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
PfGW456L13_5064 -0.9 -4.3 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
PfGW456L13_149 -0.9 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
PfGW456L13_4664 -0.9 -3.5 Putative NADPH-quinone reductase (modulator of drug activity B) compare
PfGW456L13_2857 -0.9 -1.1 ChlD component of cobalt chelatase involved in B12 biosynthesis compare
PfGW456L13_5063 -0.9 -6.6 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation compare
PfGW456L13_1770 -0.9 -5.0 InaA protein compare
PfGW456L13_705 -0.8 -0.9 FIG00953800: hypothetical protein compare
PfGW456L13_2429 -0.8 -2.1 hypothetical protein compare
PfGW456L13_913 -0.8 -4.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_2185 -0.8 -1.9 putative colanic acid biosynthesis glycosyl transferase compare
PfGW456L13_891 -0.8 -2.7 FIG00953390: hypothetical protein compare
PfGW456L13_4610 -0.8 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
PfGW456L13_4641 -0.8 -1.7 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_4051 -0.8 -1.6 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
PfGW456L13_3959 -0.8 -6.5 Excinuclease ABC subunit B compare
PfGW456L13_1283 -0.8 -7.1 Excinuclease ABC subunit A compare
PfGW456L13_174 -0.8 -4.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_1753 -0.8 -4.2 Endonuclease III (EC 4.2.99.18) compare
PfGW456L13_172 -0.8 -4.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_621 -0.8 -2.6 hypothetical protein compare
PfGW456L13_5106 -0.8 -4.4 DNA repair protein RecN compare
PfGW456L13_176 -0.8 -2.6 Transporter compare
PfGW456L13_3933 -0.8 -3.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
PfGW456L13_564 -0.8 -6.5 FIG00953482: hypothetical protein compare
PfGW456L13_992 -0.8 -3.1 FIG015547: peptidase, M16 family compare
PfGW456L13_2886 -0.8 -5.0 Excinuclease ABC subunit C compare
PfGW456L13_3947 -0.8 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
PfGW456L13_859 -0.8 -3.9 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
PfGW456L13_1447 -0.8 -1.0 Transcriptional regulator, GntR family compare
PfGW456L13_1641 -0.8 -4.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
PfGW456L13_5065 -0.8 -5.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
PfGW456L13_152 -0.7 -3.1 HflK protein compare
PfGW456L13_3466 -0.7 -1.7 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
PfGW456L13_3905 -0.7 -1.6 hypothetical protein compare
PfGW456L13_1620 -0.7 -6.3 FIG067310: hypothetical protein compare
PfGW456L13_3000 -0.7 -1.3 FIG00961385: hypothetical protein compare
PfGW456L13_3202 -0.7 -2.5 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
PfGW456L13_4091 -0.7 -4.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
PfGW456L13_2424 -0.7 -1.0 Phenylacetate-CoA oxygenase, PaaJ subunit compare
PfGW456L13_664 -0.7 -5.6 DNA recombination and repair protein RecF compare
PfGW456L13_4819 -0.7 -4.2 ABC-type sugar transport systems, ATPase components compare
PfGW456L13_4800 -0.7 -3.3 Transcriptional regulator, PadR family compare
PfGW456L13_1602 -0.7 -2.6 Aminopeptidase N compare
PfGW456L13_118 -0.7 -1.4 hypothetical protein compare
PfGW456L13_3629 -0.7 -1.0 Lactoylglutathione lyase and related lyases compare
PfGW456L13_562 -0.7 -2.8 Holliday junction resolvasome, helicase subunit compare
PfGW456L13_4614 -0.7 -3.3 lipoprotein, putative compare
PfGW456L13_4090 -0.7 -1.9 FIG002060: uncharacterized protein YggL compare
PfGW456L13_2189 -0.7 -3.5 UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase compare
PfGW456L13_1686 -0.7 -4.6 UPF0246 protein YaaA compare
PfGW456L13_3934 -0.7 -5.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
PfGW456L13_4834 -0.7 -1.0 FIG137478: Hypothetical protein compare
PfGW456L13_151 -0.7 -1.6 HflC protein compare
PfGW456L13_2538 -0.7 -1.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
PfGW456L13_2192 -0.7 -2.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
PfGW456L13_2277 -0.7 -1.7 DNA-binding response regulator, LuxR family compare
PfGW456L13_2577 -0.7 -3.2 FIG033889: YebC paralog in Betaproteobacteria compare
PfGW456L13_3893 -0.7 -2.1 Transcriptional regulator, MerR family compare
PfGW456L13_4829 -0.7 -2.1 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family compare
PfGW456L13_4846 -0.7 -4.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
PfGW456L13_4421 -0.7 -2.2 Tfp pilus assembly protein FimV compare
PfGW456L13_3577 -0.6 -1.5 hypothetical protein compare
PfGW456L13_4662 -0.6 -0.9 Transcriptional regulator, LuxR family compare
PfGW456L13_2956 -0.6 -2.2 Transcriptional regulatory protein RstA compare
PfGW456L13_4769 -0.6 -0.9 hypothetical protein compare
PfGW456L13_4507 -0.6 -1.9 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_4457 -0.6 -2.9 3-phosphoglycerate kinase compare
PfGW456L13_4055 -0.6 -4.1 Predicted hydrolase of the alpha/beta-hydrolase fold compare


Specific Phenotypes

For 11 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens GW456-L13

For stress Sodium nitrate across organisms