Experiment set2IT085 for Pseudomonas fluorescens GW456-L13

Compare to:

LB with Sodium nitrate 200 mM

Group: stress
Media: LB + Sodium nitrate (200 mM)
Culturing: pseudo13_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Mark on 3/11/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1190 A7,A8

Specific Phenotypes

For 11 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens GW456-L13

For stress Sodium nitrate across organisms

SEED Subsystems

Subsystem #Specific
2-phosphoglycolate salvage 1
ATP-dependent RNA helicases, bacterial 1
Alginate metabolism 1
Bacterial Cell Division 1
Bacterial Cytoskeleton 1
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
DNA repair, bacterial UvrD and related helicases 1
Glutathione-regulated potassium-efflux system and associated functions 1
Glycolate, glyoxylate interconversions 1
Photorespiration (oxidative C2 cycle) 1
Potassium homeostasis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UDP-α-D-glucose biosynthesis 2 2 1
queuosine biosynthesis I (de novo) 4 4 1
sucrose degradation II (sucrose synthase) 5 4 1
queuosine biosynthesis III (queuosine salvage) 5 3 1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis 6 4 1
stachyose degradation 7 2 1
sucrose biosynthesis II 8 6 1
sucrose biosynthesis I (from photosynthesis) 9 7 1
photorespiration I 9 6 1
photorespiration III 9 5 1
photorespiration II 10 6 1
colanic acid building blocks biosynthesis 11 9 1
type I lipoteichoic acid biosynthesis (S. aureus) 17 5 1
superpathway of anaerobic sucrose degradation 19 15 1