Experiment set2IT085 for Pseudomonas simiae WCS417

Compare to:

L-Citrulline carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.3 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_18560 -6.1 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18600 -5.5 -3.6 isopropylmalate isomerase compare
PS417_04415 -5.4 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -5.4 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -5.3 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -5.1 -4.9 tryptophan synthase subunit beta compare
PS417_02175 -5.1 -3.5 transcriptional regulator compare
PS417_01855 -5.0 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_04420 -4.9 -11.4 histidinol dehydrogenase compare
PS417_17580 -4.8 -4.6 citrulline utilization hydrolase (from data) conserved
PS417_25720 -4.7 -9.0 anthranilate synthase component II compare
PS417_18595 -4.7 -5.6 3-isopropylmalate dehydratase compare
PS417_25725 -4.7 -13.1 anthranilate synthase component I compare
PS417_18585 -4.7 -6.4 3-isopropylmalate dehydrogenase compare
PS417_27795 -4.5 -2.1 orotate phosphoribosyltransferase compare
PS417_25715 -4.5 -6.1 anthranilate phosphoribosyltransferase compare
PS417_16465 -4.4 -11.0 sirohydrochlorin ferrochelatase compare
PS417_07640 -4.3 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_12855 -4.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02510 -4.3 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20985 -4.0 -3.9 porin compare
PS417_18690 -4.0 -4.7 aromatic amino acid aminotransferase compare
PS417_23800 -3.7 -13.5 ketol-acid reductoisomerase compare
PS417_23805 -3.7 -7.1 acetolactate synthase 3 regulatory subunit compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_26040 -3.7 -5.3 malate synthase compare
PS417_01565 -3.7 -5.9 imidazole glycerol phosphate synthase compare
PS417_27835 -3.7 -9.6 endoribonuclease compare
PS417_27435 -3.6 -8.7 polyphosphate kinase compare
PS417_12290 -3.6 -8.2 sulfite reductase compare
PS417_00180 -3.6 -3.5 tryptophan synthase subunit alpha compare
PS417_23900 -3.5 -13.1 poly(A) polymerase compare
PS417_26740 -3.5 -12.5 homoserine acetyltransferase compare
PS417_26745 -3.4 -5.2 methionine biosynthesis protein MetW compare
PS417_23810 -3.3 -15.8 acetolactate synthase 3 catalytic subunit compare
PS417_20125 -3.3 -4.1 phosphoribosylglycinamide formyltransferase compare
PS417_01580 -3.3 -1.8 imidazole glycerol phosphate synthase compare
PS417_02415 -3.3 -6.2 phosphoserine phosphatase compare
PS417_01605 -3.1 -2.9 phosphoglycerate mutase compare
PS417_24155 -3.0 -4.1 ATP-binding protein compare
PS417_06375 -3.0 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26995 -2.9 -9.2 phosphoserine phosphatase compare
PS417_17585 -2.9 -10.1 ornithine cyclodeaminase conserved
PS417_01570 -2.8 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08125 -2.7 -1.7 prephenate dehydratase compare
PS417_23110 -2.6 -11.6 2-isopropylmalate synthase compare
PS417_18530 -2.6 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_20160 -2.6 -4.0 cysteine synthase compare
PS417_16570 -2.6 -11.3 isocitrate lyase compare
PS417_24710 -2.6 -11.4 lipoprotein compare
PS417_23770 -2.5 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_26890 -2.5 -7.2 dihydroxy-acid dehydratase compare
PS417_01560 -2.4 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_01950 -2.2 -5.5 malate dehydrogenase compare
PS417_23375 -2.0 -2.0 cytochrome C oxidase compare
PS417_23995 -2.0 -1.2 preprotein translocase subunit SecG compare
PS417_24835 -1.9 -4.9 hypothetical protein compare
PS417_08220 -1.9 -1.4 epimerase compare
PS417_01210 -1.9 -8.4 hypothetical protein compare
PS417_21750 -1.8 -13.2 acetyl-CoA synthetase compare
PS417_21125 -1.8 -7.8 phosphoadenosine phosphosulfate reductase compare
PS417_17490 -1.8 -3.1 ABC transporter ATP-binding protein compare
PS417_08245 -1.7 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27875 -1.7 -8.4 histidine kinase compare
PS417_17565 -1.6 -2.8 branched-chain amino acid aminotransferase compare
PS417_08230 -1.6 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08155 -1.6 -1.9 integration host factor subunit beta compare
PS417_06600 -1.6 -1.4 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_20610 -1.6 -1.7 hypothetical protein compare
PS417_08225 -1.6 -5.1 acetolactate synthase compare
PS417_21510 -1.6 -2.0 histidine kinase compare
PS417_21655 -1.5 -1.8 aspartate kinase compare
PS417_02555 -1.5 -11.3 exoribonuclease R compare
PS417_17485 -1.4 -4.1 membrane protein compare
PS417_09210 -1.4 -1.2 TetR family transcriptional regulator compare
PS417_08195 -1.4 -7.0 hypothetical protein compare
PS417_08200 -1.3 -2.5 hypothetical protein compare
PS417_04365 -1.3 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08130 -1.3 -2.1 aspartate aminotransferase compare
PS417_25940 -1.3 -7.2 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_21430 -1.3 -2.8 3-oxoacyl-ACP synthase compare
PS417_26725 -1.3 -4.3 hypothetical protein compare
PS417_03925 -1.3 -6.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_12355 -1.3 -1.6 magnesium chelatase compare
PS417_23380 -1.3 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_08540 -1.2 -3.4 RNA helicase compare
PS417_07170 -1.2 -3.5 hypothetical protein compare
PS417_28080 -1.2 -8.2 phosphate ABC transporter permease compare
PS417_04180 -1.2 -2.9 GntR family transcriptional regulator compare
PS417_20030 -1.2 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_02280 -1.2 -2.8 GlcNAc-PI de-N-acetylase compare
PS417_22520 -1.2 -1.8 histidine kinase compare
PS417_17855 -1.2 -4.0 major facilitator transporter compare
PS417_28070 -1.2 -5.4 phosphate ABC transporter ATP-binding protein compare
PS417_24810 -1.2 -6.7 aldehyde dehydrogenase compare
PS417_23390 -1.2 -5.1 ubiquinol oxidase subunit II compare
PS417_04270 -1.1 -6.0 ribonuclease G compare
PS417_22115 -1.1 -2.6 transcriptional regulator compare
PS417_08105 -1.1 -8.2 N-ethylammeline chlorohydrolase compare
PS417_22385 -1.1 -7.1 quinolinate synthase A compare
PS417_05165 -1.1 -3.1 cytosol aminopeptidase compare
PS417_12595 -1.1 -1.5 transcriptional regulator compare
PS417_07165 -1.1 -4.0 dihydrodipicolinate synthase compare
PS417_22445 -1.1 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_23775 -1.1 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_18590 -1.1 -1.7 SAM-dependent methyltransferase compare
PS417_17480 -1.1 -4.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_07010 -1.1 -2.6 pseudouridine synthase compare
PS417_24765 -1.0 -3.8 membrane protein compare
PS417_19335 -1.0 -2.3 isochorismatase compare
PS417_08135 -1.0 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16510 -1.0 -2.0 Clp protease ClpX compare
PS417_26985 -1.0 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26605 -1.0 -0.8 malonate decarboxylase subunit beta compare
PS417_27010 -1.0 -6.1 threonine dehydratase compare
PS417_22450 -1.0 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_02690 -1.0 -4.7 N-acylglucosamine 2-epimerase compare
PS417_15035 -1.0 -1.6 alkylhydroperoxidase compare
PS417_25920 -1.0 -5.2 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_17000 -1.0 -1.8 MerR family transcriptional regulator compare
PS417_06200 -1.0 -2.8 protein-PII uridylyltransferase compare
PS417_12310 -1.0 -5.7 methionine synthase compare
PS417_20025 -1.0 -1.6 alpha-ribazole phosphatase compare
PS417_27290 -1.0 -0.8 hypothetical protein compare
PS417_11845 -0.9 -2.7 RpiR family transcriptional regulator compare
PS417_07115 -0.9 -6.2 L-aspartate oxidase compare
PS417_04375 -0.9 -2.3 ABC transporter ATP-binding protein compare
PS417_20665 -0.9 -4.4 hypothetical protein compare
PS417_28050 -0.9 -2.8 hypothetical protein compare
PS417_21690 -0.9 -4.0 N-succinylarginine dihydrolase compare
PS417_01915 -0.9 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05840 -0.9 -2.7 LuxR family transcriptional regulator compare
PS417_18435 -0.9 -2.4 hypothetical protein compare
PS417_28075 -0.9 -3.5 phosphate ABC transporter permease compare
PS417_16490 -0.9 -1.8 cell division protein FtsK compare
PS417_06355 -0.9 -2.3 protein-L-isoaspartate O-methyltransferase compare
PS417_14980 -0.9 -1.2 universal stress protein UspA compare
PS417_06530 -0.9 -1.4 membrane protein compare
PS417_28085 -0.9 -4.9 phosphate-binding protein compare
PS417_24805 -0.9 -4.7 Fis family transcriptional regulator compare
PS417_06075 -0.8 -1.5 hypothetical protein compare
PS417_08580 -0.8 -4.2 histidine kinase compare
PS417_27305 -0.8 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25790 -0.8 -2.5 aminoglycoside phosphotransferase compare
PS417_14940 -0.8 -1.7 LysR family transcriptional regulator compare
PS417_00510 -0.8 -1.0 membrane protein compare
PS417_17455 -0.8 -1.8 cytochrome C compare
PS417_27005 -0.8 -1.0 membrane protein compare
PS417_07470 -0.8 -1.3 hypothetical protein compare
PS417_21025 -0.8 -3.7 PEP synthetase regulatory protein compare
PS417_08730 -0.8 -1.3 cytochrome C compare
PS417_27475 -0.8 -1.6 membrane protein compare
PS417_17495 -0.8 -3.3 multidrug ABC transporter permease compare
PS417_26175 -0.8 -0.8 sarcosine oxidase subunit gamma compare
PS417_17435 -0.8 -4.9 dehydrogenase compare
PS417_22570 -0.8 -0.9 H-NS histone compare
PS417_27585 -0.8 -1.3 diaminopimelate epimerase compare
PS417_02800 -0.8 -1.7 acetyltransferase compare
PS417_27035 -0.7 -2.7 FAD-linked oxidase compare
PS417_13305 -0.7 -0.9 hypothetical protein compare
PS417_07455 -0.7 -1.4 glutamine amidotransferase compare
PS417_07620 -0.7 -1.7 beta-hexosaminidase compare
PS417_27605 -0.7 -3.0 hypothetical protein compare
PS417_22495 -0.7 -3.0 histidine triad (HIT) protein compare
PS417_07175 -0.7 -3.0 beta-lactamase compare
PS417_11725 -0.7 -1.7 peptidase M19 compare
PS417_26510 -0.7 -4.2 5,10-methylenetetrahydrofolate reductase compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23370 -0.7 -2.7 protoheme IX farnesyltransferase compare
PS417_05815 -0.7 -2.9 recombinase RecA compare
PS417_19965 -0.7 -4.7 histidine kinase compare
PS417_09475 -0.7 -2.0 class V aminotransferase compare
PS417_03300 -0.7 -2.5 alanine acetyltransferase compare
PS417_00900 -0.7 -1.7 4-aminobutyrate aminotransferase compare
PS417_19095 -0.7 -0.9 hypothetical protein compare
PS417_00295 -0.7 -3.4 hypothetical protein compare
PS417_17450 -0.7 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_10205 -0.7 -3.1 hypothetical protein compare
PS417_09440 -0.7 -1.5 MerR family transcriptional regulator compare
PS417_22210 -0.7 -1.1 AraC family transcriptional regulator compare
PS417_08205 -0.7 -1.5 acetyltransferase compare
PS417_21850 -0.7 -0.9 LysR family transcriptional regulator compare
PS417_27930 -0.7 -2.3 type VI secretion protein compare
PS417_15660 -0.7 -2.2 hemerythrin compare
PS417_25930 -0.7 -3.3 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_21695 -0.7 -1.9 succinylglutamate-semialdehyde dehydrogenase compare
PS417_06045 -0.7 -1.9 membrane protein compare
PS417_05985 -0.7 -2.4 chemotaxis protein CheY compare
PS417_23385 -0.7 -3.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_19075 -0.7 -3.7 ABC transporter ATP-binding protein compare
PS417_26770 -0.7 -1.5 tRNA (guanine-N7)-methyltransferase compare
PS417_05695 -0.6 -2.7 transcriptional regulator compare
PS417_17755 -0.6 -1.4 hypothetical protein compare
PS417_00550 -0.6 -0.8 hypothetical protein compare
PS417_17240 -0.6 -1.9 trigger factor compare
PS417_08250 -0.6 -1.4 competence protein ComEA compare
PS417_28325 -0.6 -1.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_11485 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_15135 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Citrulline in Pseudomonas simiae WCS417

For carbon source L-Citrulline across organisms