Experiment set2IT085 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

apoplastic, chopping recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_0033 -5.5 -3.8 tryptophan synthase, alpha chain compare
Psyr_4580 -5.4 -3.8 anthranilate phosphoribosyltransferase compare
Psyr_0167 -5.1 -3.5 hypothetical protein compare
Psyr_1350 -4.7 -3.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0473 -4.7 -7.1 Methionine biosynthesis MetW compare
Psyr_1663 -4.6 -4.1 phosphoribosylanthranilate isomerase compare
Psyr_0474 -4.6 -8.3 homoserine O-acetyltransferase compare
Psyr_4270 -4.5 -4.4 serine hydroxymethyltransferase compare
Psyr_1983 -4.5 -4.3 3-isopropylmalate dehydratase, large subunit compare
Psyr_0378 -4.3 -3.0 Glycosyl transferase, family 2 compare
Psyr_4609 -4.2 -16.8 anthranilate synthase, component I compare
Psyr_1984 -4.0 -5.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_1669 -4.0 -9.3 O-succinylhomoserine sulfhydrylase compare
Psyr_0848 -4.0 -13.7 ketol-acid reductoisomerase compare
Psyr_1985 -4.0 -8.1 3-isopropylmalate dehydrogenase compare
Psyr_0377 -3.9 -3.8 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_2980 -3.7 -2.4 UDP-glucose pyrophosphorylase compare
Psyr_4369 -3.7 -9.2 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0025 -3.6 -3.4 shikimate dehydrogenase compare
Psyr_3179 -3.5 -3.4 DNA translocase FtsK compare
Psyr_1308 -3.5 -3.8 Protein-glutamate methylesterase compare
Psyr_0847 -3.5 -6.7 acetolactate synthase, small subunit compare
Psyr_3958 -3.5 -10.1 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1668 -3.5 -2.2 amidophosphoribosyltransferase compare
Psyr_0219 -3.4 -9.9 phosphomannomutase compare
Psyr_0846 -3.4 -10.6 acetolactate synthase, large subunit compare
Psyr_0385 -3.4 -3.8 phosphoribosyl-ATP pyrophosphatase compare
Psyr_5133 -3.3 -5.4 tRNA modification GTPase trmE compare
Psyr_1056 -3.2 -6.0 Poly(beta-D-mannuronate) lyase compare
Psyr_1140 -3.2 -4.8 Disulfide bond formation protein DsbB compare
Psyr_0826 -3.2 -9.9 glucose-6-phosphate isomerase compare
Psyr_1544 -3.2 -4.3 SirA-like protein compare
Psyr_4341 -3.2 -8.9 thiamine-phosphate diphosphorylase compare
Psyr_0704 -3.2 -6.9 glutamate 5-kinase compare
Psyr_3266 -3.1 -4.1 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_RNA53 -3.1 -2.0 tRNA-Arg compare
Psyr_0529 -3.1 -3.6 Glycosyl transferase, group 1 compare
Psyr_4744 -3.1 -1.6 hypothetical protein compare
Psyr_0476 -3.1 -2.8 pyrroline-5-carboxylate reductase compare
Psyr_RNA11 -3.1 -1.6 tRNA-Lys compare
Psyr_1190 -3.1 -4.1 type III transcriptional regulator HrpR compare
Psyr_4740 -3.0 -7.5 thiazole-phosphate synthase compare
Psyr_4852 -2.9 -5.7 D-3-phosphoglycerate dehydrogenase compare
Psyr_4134 -2.9 -10.7 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_3008 -2.8 -5.2 Undecaprenyl-diphosphatase compare
Psyr_0386 -2.8 -4.4 phosphoribosyl-AMP cyclohydrolase compare
Psyr_1834 -2.8 -1.9 conserved hypothetical protein compare
Psyr_0557 -2.8 -7.7 phosphoserine phosphatase compare
Psyr_0576 -2.7 -5.1 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1614 -2.7 -4.1 lipid A biosynthesis acyltransferase compare
Psyr_3339 -2.7 -2.9 Carbon storage regulator compare
Psyr_0469 -2.6 -8.8 dihydroxyacid dehydratase compare
Psyr_4132 -2.6 -6.8 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4133 -2.6 -10.8 histidinol dehydrogenase compare
Psyr_0014 -2.6 -5.2 lipid A biosynthesis acyltransferase compare
Psyr_0915 -2.6 -8.4 NAD-dependent epimerase/dehydratase compare
Psyr_3321 -2.6 -2.3 transcriptional regulator, LysR family compare
Psyr_4340 -2.6 -7.5 phosphomethylpyrimidine kinase, putative compare
Psyr_1257 -2.6 -8.6 2-isopropylmalate synthase compare
Psyr_4991 -2.5 -2.3 hypothetical protein compare
Psyr_4894 -2.5 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0517 -2.5 -1.1 Dihydrolipoamide acetyltransferase compare
Psyr_1206 -2.5 -5.4 type III secretion protein HrcT compare
Psyr_1747 -2.5 -4.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0951 -2.5 -2.5 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0917 -2.5 -6.6 ABC-2 compare
Psyr_0918 -2.5 -6.6 ABC transporter compare
Psyr_0680 -2.4 -2.8 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0827 -2.4 -4.9 pantothenate synthetase compare
Psyr_1748 -2.4 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0034 -2.3 -6.1 tryptophan synthase, beta chain compare
Psyr_0528 -2.3 -2.7 Carbamoyltransferase compare
Psyr_1410 -2.3 -4.9 Holliday junction DNA helicase RuvB compare
Psyr_1251 -2.3 -2.7 quinoprotein compare
Psyr_2136 -2.3 -2.8 Molybdenum cofactor biosynthesis protein compare
Psyr_0382 -2.2 -1.9 Sec-independent periplasmic protein translocase compare
Psyr_1195 -2.2 -7.3 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
Psyr_0535 -2.2 -2.0 toluene tolerance protein, putative compare
Psyr_4443 -2.2 -1.2 hypothetical protein compare
Psyr_1588 -2.2 -2.7 Putative exonuclease, RdgC compare
Psyr_1419 -2.2 -1.9 preQ(0) biosynthesis protein QueC compare
Psyr_1209 -2.1 -1.3 type III secretion protein HrcQb compare
Psyr_1667 -2.1 -3.6 Colicin V production protein compare
Psyr_4896 -2.1 -4.4 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4408 -2.1 -7.2 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_2202 -2.1 -1.7 ABC transporter compare
Psyr_1401 -2.1 -3.8 Histidine triad (HIT) protein compare
Psyr_0919 -2.1 -9.9 Chromosome segregation ATPase-like protein compare
Psyr_2624 -2.0 -2.2 lipoprotein, putative compare
Psyr_4686 -2.0 -5.3 8-amino-7-oxononanoate synthase compare
Psyr_3691 -2.0 -3.9 conserved hypothetical protein compare
Psyr_4128 -2.0 -7.6 sulfate adenylyltransferase subunit 2 compare
Psyr_2227 -2.0 -1.4 conserved hypothetical protein compare
Psyr_1408 -2.0 -2.2 Holliday junction endonuclease RuvC compare
Psyr_4856 -2.0 -2.1 conserved hypothetical protein compare
Psyr_0920 -2.0 -12.3 Glycosyl transferase, group 1 compare
Psyr_3698 -1.9 -2.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_0914 -1.9 -6.3 Glycosyl transferase, group 1 compare
Psyr_1409 -1.9 -2.0 Holliday junction DNA helicase subunit RuvA compare
Psyr_3883 -1.9 -2.9 dCTP deaminase compare
Psyr_2398 -1.8 -2.4 ABC transporter compare
Psyr_1388 -1.8 -1.5 Protein of unknown function UPF0066 compare
Psyr_1385 -1.8 -2.9 diacylglycerol kinase compare
Psyr_0575 -1.8 -2.6 protease FtsH subunit HflC compare
Psyr_1378 -1.8 -2.6 RecA protein compare
Psyr_3636 -1.8 -6.9 Polysaccharide biosynthesis protein CapD compare
Psyr_3199 -1.8 -2.5 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0758 -1.8 -11.3 beta-fructofuranosidase compare
Psyr_3550 -1.8 -1.8 conserved hypothetical protein compare
Psyr_5027 -1.8 -1.3 bacterial nucleoid protein HU alpha subunit compare
Psyr_0923 -1.7 -5.5 hypothetical protein compare
Psyr_3334 -1.7 -2.1 Protein of unknown function DUF336 compare
Psyr_0532 -1.7 -4.4 conserved hypothetical protein compare
Psyr_1211 -1.7 -2.7 type III secretion protein HrpP compare
Psyr_3673 -1.7 -1.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_3861 -1.7 -1.6 Protein of unknown function DUF1145 compare
Psyr_3090 -1.6 -3.1 hypothetical protein compare
Psyr_1530 -1.6 -2.0 hypothetical protein compare
Psyr_2613 -1.6 -4.7 Cyclic peptide transporter compare
Psyr_4491 -1.6 -2.0 Deoxyribose-phosphate aldolase compare
Psyr_2581 -1.6 -3.8 FecR protein compare
Psyr_2897 -1.6 -2.8 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3651 -1.6 -2.3 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 compare
Psyr_0936 -1.6 -5.7 Glycosyl transferase, group 1 compare
Psyr_0376 -1.6 -2.9 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_2806 -1.6 -2.1 Bacteriophage Lambda NinG compare
Psyr_0579 -1.6 -7.2 RNAse R compare
Psyr_4684 -1.6 -2.5 biotin synthesis protein BioC compare
Psyr_1212 -1.6 -3.9 type III secretion protein HrpO compare
Psyr_3637 -1.6 -6.7 Glycosyl transferase, family 4 compare
Psyr_4140 -1.6 -2.4 Protein of unknown function DUF140 compare
Psyr_4897 -1.6 -1.8 imidazoleglycerol-phosphate dehydratase compare
Psyr_4808 -1.5 -1.1 conserved hypothetical protein compare
Psyr_3854 -1.5 -1.9 OmpA/MotB compare
Psyr_2057 -1.5 -1.4 acyl-CoA thioesterase II, putative compare
Psyr_1054 -1.5 -3.9 alginate biosynthesis protein AlgJ compare
Psyr_4091 -1.5 -2.8 8-oxo-dGTPase compare
Psyr_4484 -1.5 -4.3 hypothetical protein compare
Psyr_1556 -1.5 -1.9 hypothetical protein compare
Psyr_4130 -1.5 -7.1 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3459 -1.5 -1.8 Helix-turn-helix, Fis-type compare
Psyr_3226 -1.5 -2.3 Transcriptional activator RfaH compare
Psyr_2474 -1.5 -2.9 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_2022 -1.5 -1.7 Glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
Psyr_4070 -1.5 -3.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0550 -1.4 -1.1 Protein of unknown function UPF0227 compare
Psyr_2977 -1.4 -2.9 cointegrate resolution protein T compare
Psyr_4687 -1.4 -5.2 biotin synthase compare
Psyr_2719 -1.4 -1.7 transcriptional regulator, TetR family compare
Psyr_4414 -1.4 -2.2 precorrin-3 methyltransferase compare
Psyr_3581 -1.4 -3.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_4844 -1.4 -5.1 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_1509 -1.4 -2.7 PilM protein, putative compare
Psyr_1458 -1.4 -1.1 hypothetical protein compare
Psyr_1118 -1.4 -3.1 Aldose 1-epimerase compare
Psyr_1191 -1.4 -4.5 type III transcriptional regulator HrpS compare
Psyr_1914 -1.4 -6.2 transaldolase compare
Psyr_4161 -1.4 -2.1 Rod shape-determining protein MreD compare
Psyr_4882 -1.3 -4.7 protein translocase subunit secB compare
Psyr_1999 -1.3 -1.9 OmpA/MotB compare
Psyr_1881 -1.3 -2.8 conserved hypothetical protein compare
Psyr_3675 -1.3 -2.0 adenosylcobinamide kinase compare
Psyr_4203 -1.3 -1.5 SsrA-binding protein compare
Psyr_1213 -1.3 -2.8 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3236 -1.3 -2.6 transcriptional regulator, LysR family compare
Psyr_4158 -1.3 -4.8 conserved hypothetical protein compare
Psyr_0788 -1.3 -1.6 Response regulator receiver compare
Psyr_3676 -1.3 -2.9 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_2784 -1.3 -2.7 phage-related conserved hypothetical protein compare
Psyr_1395 -1.2 -4.3 virulence compare
Psyr_1060 -1.2 -4.7 Sel1-like repeat protein compare
Psyr_1417 -1.2 -4.3 TPR repeat protein compare
Psyr_0436 -1.2 -2.1 Phosphopantetheine-binding protein compare
Psyr_4388 -1.2 -2.1 Response regulator receiver compare
Psyr_0828 -1.2 -1.2 ketopantoate hydroxymethyltransferase compare
Psyr_1765 -1.2 -1.5 GCN5-related N-acetyltransferase compare
Psyr_2049 -1.2 -2.4 K+ transporting ATPase, KdpC subunit compare
Psyr_1891 -1.2 -2.7 hypothetical protein compare
Psyr_4884 -1.2 -3.7 Rhodanese-like protein compare
Psyr_0889 -1.2 -1.0 SpoVT/AbrB-like protein compare
Psyr_2573 -1.2 -2.1 transcriptional regulator, DeoR family compare
Psyr_5065 -1.1 -4.5 ATP-dependent DNA helicase UvrD compare
Psyr_4112 -1.1 -4.8 Protein of unknown function UPF0011 compare
Psyr_1381 -1.1 -1.9 conserved hypothetical protein compare
Psyr_1543 -1.1 -3.7 Peptidase M48, Ste24p compare
Psyr_5072 -1.1 -1.4 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2829 -1.1 -1.8 conserved hypothetical protein compare
Psyr_2906 -1.1 -1.5 Pilus retraction protein PilT compare
Psyr_4413 -1.1 -2.4 conserved hypothetical protein compare
Psyr_0201 -1.1 -3.3 ATP-dependent DNA helicase RecG compare
Psyr_2272 -1.1 -3.2 Helix-turn-helix motif protein compare
Psyr_3680 -1.1 -1.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_1650 -1.1 -1.7 aminodeoxychorismate lyase apoprotein compare
Psyr_3299 -1.1 -1.2 two component transcriptional regulator, LuxR family compare
Psyr_3367 -1.1 -1.9 Iron permease FTR1 compare
Psyr_5132 -1.1 -1.4 Glucose-inhibited division protein A subfamily compare
Psyr_1216 -1.1 -4.5 type III secretion outer membrane protein PopN compare
Psyr_5067 -1.1 -2.6 conserved hypothetical protein compare
Psyr_2679 -1.1 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0849 -1.1 -4.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare


Specific Phenotypes

For 2 genes in this experiment