| | gene | name | fitness | t score | description | |
|---|
| b1036 | ycdZ | +2.7 | 11.9 | orf, hypothetical protein (VIMSS) | compare |
| b3778 | rep | +2.2 | 16.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1865 | nudB | +2.2 | 2.4 | dATP pyrophosphohydrolase (NCBI) | compare |
| b3979 | thrT | +2.0 | 2.9 | tRNA-Thr (NCBI) | compare |
| b0018 | mokC | +1.9 | 2.4 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0846 | ybjK | +1.9 | 10.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2393 | nupC | +1.9 | 10.0 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b0059 | hepA | +1.8 | 14.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b3387 | dam | +1.7 | 13.4 | DNA adenine methylase (NCBI) | compare |
| b3806 | cyaA | +1.7 | 10.1 | adenylate cyclase (NCBI) | compare |
| b2175 | spr | +1.6 | 6.1 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2912 | ygfA | +1.5 | 5.2 | putative ligase (VIMSS) | compare |
| b1235 | rssB | +1.5 | 8.9 | response regulator of RpoS (NCBI) | compare |
| b1855 | lpxM | +1.4 | 4.6 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1961 | dcm | +1.4 | 2.6 | DNA cytosine methylase (NCBI) | compare |
| b2904 | gcvH | +1.4 | 3.0 | glycine cleavage system protein H (NCBI) | compare |
| b0145 | dksA | +1.3 | 3.9 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0889 | lrp | +1.3 | 3.9 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1134 | ymfB | +1.3 | 2.4 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b4000 | hupA | +1.3 | 6.5 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2903 | gcvP | +1.3 | 10.2 | glycine dehydrogenase (NCBI) | compare |
| b1148 | ymfM | +1.3 | 2.4 | e14 prophage; predicted protein (NCBI) | compare |
| b2951 | yggS | +1.2 | 4.9 | predicted enzyme (NCBI) | compare |
| b0463 | acrA | +1.2 | 8.3 | multidrug efflux system (NCBI) | compare |
| b3169 | nusA | +1.2 | 3.5 | transcription elongation factor NusA (NCBI) | compare |
| b0462 | acrB | +1.2 | 9.9 | multidrug efflux system protein (NCBI) | compare |
| b4481 | rffT | +1.2 | 6.8 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0015 | dnaJ | +1.2 | 8.2 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b0564 | appY | +1.2 | 1.4 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b0641 | rlpB | +1.1 | 1.7 | minor lipoprotein (NCBI) | compare |
| b3181 | greA | +1.1 | 5.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4406 | yaeP | +1.1 | 2.1 | hypothetical protein (NCBI) | compare |
| b1349 | recT | +1.1 | 4.6 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b0125 | hpt | +1.1 | 5.1 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b4370 | leuQ | +1.0 | 2.5 | tRNA-Leu (NCBI) | compare |
| b4578 | insP | +1.0 | 1.7 | no description | compare |
| b4177 | purA | +1.0 | 3.6 | adenylosuccinate synthetase (NCBI) | compare |
| b3764 | yifE | +1.0 | 4.9 | hypothetical protein (NCBI) | compare |
| b2905 | gcvT | +1.0 | 5.2 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1296 | ycjJ | +1.0 | 2.7 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1550 | b1550 | +1.0 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3035 | tolC | +1.0 | 6.3 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b1764 | selD | +1.0 | 3.4 | selenophosphate synthetase (NCBI) | compare |
| b3790 | rffC | +1.0 | 5.1 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b4527 | b1354 | +0.9 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.9 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1511 | ydeV | +0.9 | 3.7 | putative kinase (VIMSS) | compare |
| b1263 | trpD | +0.9 | 2.0 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b3341 | rpsG | +0.9 | 1.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b3405 | ompR | +0.9 | 4.4 | osmolarity response regulator (NCBI) | compare |
| b0627 | tatE | +0.9 | 1.5 | twin arginine translocase protein E (NCBI) | compare |
| b4585 | sroB | +0.9 | 1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b2202 | napC | +0.9 | 3.3 | nitrate reductase, cytochrome c-type, periplasmic (NCBI) | compare |
| b1613 | manA | +0.9 | 1.9 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b0764 | modB | +0.9 | 3.2 | molybdate ABC transporter permease protein (NCBI) | compare |
| b0438 | clpX | +0.9 | 5.0 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1234 | rssA | +0.9 | 3.9 | conserved protein (RefSeq) | compare |
| b3391 | hofQ | +0.9 | 5.9 | predicted fimbrial transporter (NCBI) | compare |
| b2582 | trxC | +0.9 | 2.1 | thioredoxin 2 (NCBI) | compare |
| b1540 | ydfH | +0.8 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3261 | fis | +0.8 | 3.0 | DNA-binding protein Fis (NCBI) | compare |
| b2480 | bcp | +0.8 | 3.4 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b1448 | yncA | +0.8 | 1.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2114 | metG | +0.8 | 1.2 | methionyl-tRNA synthetase (NCBI) | compare |
| b1948 | fliP | +0.8 | 2.9 | flagellar biosynthesis protein P (NCBI) | compare |
| b1251 | yciI | +0.8 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4194 | ulaB | +0.8 | 2.0 | L-ascorbate-specific enzyme IIB component of PTS (NCBI) | compare |
| b0817 | mntR | +0.8 | 2.5 | DNA-binding transcriptional regulator of mntH (NCBI) | compare |
| b1850 | eda | +0.8 | 1.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0688 | pgm | +0.8 | 2.9 | phosphoglucomutase (NCBI) | compare |
| b2688 | gshA | +0.8 | 4.5 | glutamate--cysteine ligase (NCBI) | compare |
| b0365 | tauA | +0.8 | 3.2 | taurine transport system periplasmic protein (VIMSS) | compare |
| b1255 | yciC | +0.8 | 3.0 | hypothetical protein (NCBI) | compare |
| b0418 | pgpA | +0.7 | 3.5 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b2488 | hyfH | +0.7 | 1.5 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b1999 | yeeP | +0.7 | 2.6 | putative histone (VIMSS) | compare |
| b3791 | rffA | +0.7 | 4.9 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b2895 | fldB | +0.7 | 1.6 | flavodoxin 2 (NCBI) | compare |
| b0044 | fixX | +0.7 | 2.4 | predicted 4Fe-4S ferredoxin-type protein (NCBI) | compare |
| b1584 | speG | +0.7 | 4.3 | spermidine N1-acetyltransferase (NCBI) | compare |
| b1848 | yebG | +0.7 | 1.1 | conserved protein regulated by LexA (NCBI) | compare |
| b4239 | treC | +0.7 | 3.4 | trehalose-6-P hydrolase (NCBI) | compare |
| b2807 | ygdD | +0.7 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b2481 | hyfA | +0.7 | 2.5 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b2198 | ccmD | +0.7 | 1.4 | cytochrome c biogenesis protein (NCBI) | compare |
| b1890 | motA | +0.7 | 2.0 | flagellar motor protein MotA (NCBI) | compare |
| b0437 | clpP | +0.7 | 3.9 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b3392 | yrfA | +0.7 | 4.2 | orf, hypothetical protein (VIMSS) | compare |
| b3977 | tyrU | +0.7 | 1.0 | tRNA-Tyr (NCBI) | compare |
| b0209 | yafD | +0.7 | 3.6 | hypothetical protein (NCBI) | compare |
| b2937 | speB | +0.7 | 4.2 | agmatinase (NCBI) | compare |
| b1426 | ydcH | +0.7 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2947 | gshB | +0.7 | 3.0 | glutathione synthetase (NCBI) | compare |
| b3857 | mobA | +0.7 | 3.0 | molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) | compare |
| b1669 | ydhT | +0.7 | 1.7 | hypothetical protein (NCBI) | compare |
| b1185 | dsbB | +0.7 | 1.5 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1953 | b1953 | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3916 | pfkA | +0.7 | 2.6 | 6-phosphofructokinase (NCBI) | compare |
| b3892 | fdoI | +0.7 | 4.0 | formate dehydrogenase-O, cytochrome b556 subunit (NCBI) | compare |
| b0624 | crcB | +0.7 | 2.2 | camphor resistance protein CrcB (NCBI) | compare |
| b1253 | yciA | +0.7 | 1.7 | predicted hydrolase (NCBI) | compare |
| b3973 | birA | +0.7 | 1.2 | biotin--protein ligase (NCBI) | compare |
| b2698 | recX | +0.7 | 1.5 | RecA regulator RecX (NCBI) | compare |
| b0778 | bioD | +0.7 | 2.1 | dethiobiotin synthetase (NCBI) | compare |
| b1261 | trpB | +0.7 | 1.1 | tryptophan synthase subunit beta (NCBI) | compare |
| b1938 | fliF | +0.7 | 3.5 | flagellar M-ring protein (NCBI) | compare |
| b3423 | glpR | +0.7 | 4.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3206 | npr | +0.6 | 2.9 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2829 | ptsP | +0.6 | 5.1 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b4431 | rprA | +0.6 | 1.7 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b3404 | envZ | +0.6 | 4.8 | osmolarity sensor protein (NCBI) | compare |
| b3894 | fdoG | +0.6 | 5.5 | formate dehydrogenase-O, large subunit (NCBI) | compare |
| b1565 | ydfV | +0.6 | 2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b2897 | ygfY | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b1427 | rimL | +0.6 | 1.1 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b0707 | ybgA | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b2186 | yejK | +0.6 | 4.1 | nucleoid-associated protein NdpA (NCBI) | compare |
| b0246 | yafW | +0.6 | 2.0 | CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system (NCBI) | compare |
| b0440 | hupB | +0.6 | 2.8 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b0658 | ybeX | +0.6 | 3.7 | predicteed ion transport (NCBI) | compare |
| b2935 | tktA | +0.6 | 1.8 | transketolase 1, thiamin-binding (NCBI) | compare |
| b3860 | dsbA | +0.6 | 4.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1976 | b1976 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2540 | hcaC | +0.6 | 1.1 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b2096 | gatY | +0.6 | 1.7 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b0393 | rdgC | +0.6 | 4.0 | recombination associated protein (NCBI) | compare |
| b1824 | yobF | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b0539 | ybcC | +0.6 | 2.3 | DLP12 prophage; predicted exonuclease (RefSeq) | compare |
| b0632 | dacA | +0.6 | 3.4 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3180 | yhbY | +0.6 | 2.9 | predicted RNA-binding protein (NCBI) | compare |
| b1944 | fliL | +0.6 | 2.0 | flagellar basal body-associated protein FliL (NCBI) | compare |
| b2240 | glpT | +0.6 | 3.7 | sn-glycerol-3-phosphate transporter (NCBI) | compare |
| b2708 | gutQ | +0.6 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1639 | ydhA | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1214 | ychA | +0.6 | 2.1 | predicted transcriptional regulator (NCBI) | compare |
| b1628 | rsxB | +0.6 | 1.1 | electron transport complex protein RnfB (NCBI) | compare |
| b0505 | allA | +0.6 | 2.0 | ureidoglycolate hydrolase (NCBI) | compare |
| b1949 | fliQ | +0.6 | 1.5 | flagellar biosynthesis protein Q (NCBI) | compare |
| b1524 | yneH | +0.6 | 0.7 | predicted glutaminase (NCBI) | compare |
| b2683 | ygaH | +0.6 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b2017 | yefM | +0.6 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1103 | ycfF | +0.6 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0964 | yccT | +0.6 | 1.9 | hypothetical protein (NCBI) | compare |
| b2044 | wcaL | +0.6 | 2.1 | predicted glycosyl transferase (NCBI) | compare |
| b0142 | folK | +0.6 | 0.8 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b3895 | fdhD | +0.6 | 3.6 | formate dehydrogenase accessory protein (NCBI) | compare |
| b3591 | selA | +0.6 | 4.3 | selenocysteine synthase (NCBI) | compare |
| b1097 | yceG | +0.6 | 2.8 | predicted aminodeoxychorismate lyase (NCBI) | compare |
| b2037 | rfbX | +0.6 | 4.2 | predicted polisoprenol-linked O-antigen transporter (NCBI) | compare |
| b1160 | elbA | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b0781 | moaA | +0.5 | 2.9 | molybdenum cofactor biosynthesis protein A (NCBI) | compare |
| b1939 | fliG | +0.5 | 1.6 | flagellar motor switch protein G (NCBI) | compare |
| b0643 | ybeL | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b3590 | selB | +0.5 | 4.3 | selenocysteinyl-tRNA-specific translation factor (NCBI) | compare |
| b2977 | glcG | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b0828 | iaaA | +0.5 | 1.9 | L-asparaginase (NCBI) | compare |
| b0368 | tauD | +0.5 | 1.8 | taurine dioxygenase (NCBI) | compare |
| b3260 | dusB | +0.5 | 2.2 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1945 | fliM | +0.5 | 2.6 | flagellar motor switch protein M (NCBI) | compare |
| b4606 | ypfM | +0.5 | 2.2 | hypothetical protein (RefSeq) | compare |
| b4444 | rygA | +0.5 | 1.6 | unknown RNA (NCBI) | compare |
| b4480 | hdfR | +0.5 | 2.7 | transcriptional regulator HdfR (NCBI) | compare |
| b1007 | b1007 | +0.5 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1083 | flgL | +0.5 | 1.8 | flagellar hook-associated protein L (NCBI) | compare |
| b2291 | yfbR | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1087 | yceF | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0014 | dnaK | +0.5 | 0.9 | molecular chaperone DnaK (NCBI) | compare |
| b1661 | cfa | +0.5 | 1.7 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b4001 | yjaH | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b3926 | glpK | +0.5 | 4.4 | glycerol kinase (NCBI) | compare |
| b4293 | fecI | +0.5 | 2.2 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b1486 | ddpB | +0.5 | 0.9 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1760 | ynjH | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b0841 | ybjG | +0.5 | 1.8 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4506 | ykgO | +0.5 | 1.7 | rpmJ (L36) paralog (NCBI) | compare |
| b0785 | moaE | +0.5 | 1.8 | molybdopterin synthase, large subunit (NCBI) | compare |
| b2236 | yfaE | +0.5 | 0.9 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1344 | ydaO | +0.5 | 1.7 | predicted C32 tRNA thiolase (NCBI) | compare |
| b1431 | ydcL | +0.5 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b4522 | yciX_1 | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b2614 | grpE | +0.5 | 0.7 | heat shock protein (NCBI) | compare |
| b4411 | ecnB | +0.5 | 1.1 | entericidin B membrane lipoprotein (NCBI) | compare |
| b0460 | hha | +0.5 | 2.7 | modulator of gene expression, with H-NS (NCBI) | compare |
| b0080 | fruR | +0.5 | 2.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2170 | setB | +0.5 | 1.8 | lactose/glucose efflux system (NCBI) | compare |
| b1035 | ycdY | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b4592 | yccB | +0.5 | 0.8 | hypothetical protein (RefSeq) | compare |
| b4596 | yciZ | +0.5 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1778 | yeaA | +0.5 | 0.6 | methionine sulfoxide reductase B (NCBI) | compare |
| b0870 | ltaE | +0.5 | 1.7 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b2783 | chpR | +0.5 | 1.1 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b3475 | acpT | +0.5 | 2.1 | holo-(acyl carrier protein) synthase 2 (NCBI) | compare |
| b2704 | srlB | +0.5 | 1.3 | glucitol/sorbitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b4622 | ytcA | +0.5 | 1.9 | hypothetical protein (RefSeq) | compare |
| b2004 | yeeU | +0.5 | 1.6 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1187 | fadR | +0.5 | 2.1 | fatty acid metabolism regulator (NCBI) | compare |
| b2722 | hycD | +0.5 | 2.0 | hydrogenase 3, membrane subunit (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2473 | ypfH | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1514 | lsrC | +0.5 | 0.8 | AI2 transporter (NCBI) | compare |