Experiment set2IT085 for Agrobacterium fabrum C58

Compare to:

Betanin carbon source

200 most important genes:

  gene name fitness t score description  
Atu1307 -8.1 -5.6 dihydroorotase compare
Atu1750 -7.1 -4.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -7.0 -9.6 prephenate dehydratase compare
Atu0679 -6.9 -4.8 ATP phosphoribosyltransferase compare
Atu1075 -6.6 -7.8 amidophosphoribosyltransferase compare
Atu2036 -6.6 -12.6 acetolactate synthase III, large subunit compare
Atu0432 -6.6 -8.5 O-succinylhomoserine sulfhydrylase compare
Atu2289 -6.5 -17.9 anthranilate synthase component I and II compare
Atu1308 -6.5 -7.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0400 -6.4 -6.3 orotate phosphoribosyltransferase compare
Atu2709 -6.4 -20.1 3-isopropylmalate dehydratase, large subunit compare
Atu2718 -6.4 -7.6 homoserine O-succinyltransferase compare
Atu1850 -6.4 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu0298 -6.1 -8.4 orotidine 5 compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu0038 -6.1 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3754 -6.1 -9.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0678 -6.1 -4.2 histidyl-tRNA synthetase compare
Atu0399 -6.1 -5.9 dihydroorotase compare
Atu1687 -5.9 -13.2 anthranilate phosphoribosyltransferase compare
Atu2264 -5.7 -15.5 2-isopropylmalate synthase compare
Atu1588 -5.7 -10.2 homoserine dehydrogenase compare
Atu1205 -5.7 -15.9 threonine dehydratase compare
Atu0537 -5.6 -6.7 histidinol dehydrogenase compare
Atu1845 -5.5 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu0486 -5.4 -8.3 dihydroorotate dehydrogenase compare
Atu1140 -5.4 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1844 -5.4 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -5.3 -6.3 phosphoribosylamine--glycine ligase compare
Atu2791 -5.2 -8.3 3-isopropylmalate dehydrogenase compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu1141 -5.1 -10.3 Phosphoribosylglycinamide synthetase compare
Atu2040 -5.0 -7.6 phosphoserine phosphatase compare
Atu3783 -4.9 -17.9 glutamate synthase subunit beta compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu3885 -4.9 -8.7 inositol monophosphatase compare
Atu0039 -4.9 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3469 -4.8 -3.3 phosphoglyceromutase compare
Atu3755 -4.8 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3706 -4.7 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu1688 -4.6 -5.6 indole-3-glycerol-phosphate synthase compare
Atu3784 -4.4 -27.4 glutamate synthase large subunit compare
Atu3739 -4.3 -4.4 phosphoglycerate kinase compare
Atu2548 -4.1 -19.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2015 -3.9 -16.7 aminotransferase compare
Atu2790 -3.7 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu0641 -3.5 -5.7 hypothetical protein compare
Atu0017 -3.4 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2747 -3.3 -12.8 hypothetical protein compare
Atu0598 -3.3 -7.3 phosphogluconate dehydratase compare
Atu1686 -3.1 -14.9 peptidyl-prolyl cis-trans isomerse D compare
Atu2155 -3.0 -19.8 methionine synthase compare
Atu2726 -3.0 -18.8 pyruvate carboxylase compare
Atu6114 -2.9 -4.4 hypothetical protein compare
Atu0434 -2.9 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1589 -2.7 -6.0 aminotransferase, class I compare
Atu0184 -2.5 -4.9 glucokinase compare
Atu1679 -2.5 -3.9 peptidyl prolyl cis-trans isomerase compare
Atu0030 -2.4 -2.6 phosphocarrier protein HPr compare
Atu1456 -2.4 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1359 -2.4 -1.9 dnaK deletion suppressor protein compare
Atu0953 -2.3 -1.8 hypothetical protein compare
Atu3482 -2.2 -8.1 pantoate--beta-alanine ligase compare
Atu3997 -2.2 -12.2 biotin synthetase compare
Atu0876 -2.0 -2.5 superoxide dismutase compare
Atu0031 -2.0 -2.2 PTS system, IIA component compare
Atu2650 -2.0 -11.5 glycerol-3-phosphate dehydrogenase compare
Atu4075 -2.0 -6.9 glycogen synthase compare
Atu0029 -1.9 -5.5 S-adenosylhomocysteine hydrolase compare
Atu1446 -1.9 -2.3 two component response regulator compare
Atu8115 -1.9 -5.0 Hypothetical Protein compare
Atu3483 -1.8 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1030 -1.8 -1.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1454 -1.7 -7.7 siroheme synthase compare
Atu3468 -1.6 -1.4 hypothetical protein compare
Atu0723 -1.6 -2.0 FAD dependent oxidoreductase compare
Atu3999 -1.6 -2.3 dithiobiotin synthetase compare
Atu1455 -1.6 -5.3 hypothetical protein compare
Atu2125 -1.5 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0401 -1.5 -7.4 fructokinase compare
Atu3288 -1.5 -6.7 hydroxyethylthiazole kinase compare
Atu4096 -1.5 -6.4 nicotinate-nucleotide pyrophosphorylase compare
Atu3998 -1.4 -8.6 8-amino-7-oxononanoate synthase compare
Atu4000 -1.4 -9.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4098 -1.3 -8.0 quinolinate synthetase compare
Atu0225 -1.2 -1.3 hypothetical protein compare
Atu3290 -1.2 -5.1 phosphomethylpyrimidine kinase compare
Atu6098 -1.2 -0.8 transcriptional regulator, HTH family compare
Atu0769 -1.2 -1.5 protoheme IX farnesyltransferase compare
Atu1748 -1.2 -6.5 NIFU-like protein compare
Atu2464 -1.2 -2.9 formyltetrahydrofolate deformylase compare
Atu0141 -1.1 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu2209 -1.1 -2.7 pyrroline-5-carboxylate reductase compare
Atu1904 -1.1 -1.4 transcriptional regulator compare
Atu1685 -1.0 -1.2 hypothetical protein compare
Atu3289 -1.0 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu4097 -1.0 -6.2 L-aspartate oxidase compare
Atu4317 -1.0 -2.1 TetR family transcriptional regulator compare
Atu1677 -1.0 -3.3 queuine tRNA-ribosyltransferase compare
Atu3763 -0.9 -1.6 hypothetical protein compare
Atu4616 -0.9 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu4001 -0.9 -5.0 3-oxoacyl-ACP synthase compare
Atu3609 -0.9 -5.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2123 -0.9 -3.1 methylenetetrahydrofolate reductase compare
Atu2800 -0.9 -2.6 precorrin-3B C17-methyltransferase compare
Atu4773 -0.9 -1.8 two component response regulator compare
Atu6106 -0.9 -2.8 conserved hypothetical protein compare
Atu2127 -0.9 -5.3 L-carnitine dehydratase compare
Atu0346 -0.8 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu6153 -0.8 -2.1 conserved hypothetical protein compare
Atu1354 -0.8 -0.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1676 -0.8 -4.5 para-aminobenzoate synthase component I compare
Atu1417 -0.8 -5.1 enoyl-CoA hydratase compare
Atu2207 -0.8 -2.0 two component sensor kinase compare
Atu1542 -0.8 -3.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu5073 -0.8 -4.5 pyridoxal phosphate biosynthesis protein compare
Atu0106 -0.8 -2.7 cold shock protein compare
Atu0592 -0.8 -4.0 ABC transporter, membrane spanning protein compare
Atu0591 -0.8 -5.8 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu2809 -0.8 -5.5 cobalamin biosynthesis protein compare
Atu2569 -0.8 -6.0 thiamine biosynthesis protein compare
Atu0595 -0.8 -4.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1163 -0.8 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1182 -0.8 -0.9 hypothetical protein compare
Atu2017 -0.8 -1.0 hypothetical protein compare
Atu5468 -0.7 -1.5 hypothetical protein compare
Atu5540 -0.7 -0.7 hypothetical protein compare
Atu3429 -0.7 -1.2 hypothetical protein compare
Atu2193 -0.7 -0.8 hypothetical protein compare
Atu3731 -0.7 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu5145 -0.7 -1.8 acetyltransferase compare
Atu1457 -0.7 -1.7 hypothetical protein compare
Atu2407 -0.7 -2.2 urease gamma subunit compare
Atu1463 -0.7 -3.5 glycine cleavage system component H compare
Atu5427 -0.7 -1.7 hypothetical protein compare
Atu0845 -0.7 -2.4 hypothetical protein compare
Atu1891 -0.7 -1.7 cobalamin biosynthesis protein compare
Atu3342 -0.7 -3.2 trehalose utilization-like protein compare
Atu0413 -0.7 -1.9 stress induced protein compare
Atu2805 -0.7 -3.7 cobalamin synthesis protein compare
Atu8052 -0.7 -1.0 hypothetical protein compare
Atu1175 -0.7 -1.2 hypothetical protein compare
Atu0894 -0.7 -1.5 ABC transporter, membrane spanning protein compare
Atu8056 -0.6 -0.8 hypothetical protein compare
Atu1462 -0.6 -4.4 glycine cleavage system protein P2 compare
Atu0331 -0.6 -1.7 sigma-54 modulation protein compare
Atu0593 -0.6 -4.1 ABC transporter, membrane spanning protein compare
Atu2801 -0.6 -1.9 precorrin-2 C20 methyltransferase compare
Atu0086 -0.6 -0.8 ribosome-binding factor A compare
Atu0846 -0.6 -1.5 transcriptional regulator, MarR family compare
Atu3598 -0.6 -1.0 thiol:disulfide interchange protein compare
Atu2746 -0.6 -2.5 hypothetical protein compare
Atu2799 -0.6 -2.8 precorrin-6x reductase compare
Atu1007 -0.6 -2.2 hypothetical protein compare
Atu1464 -0.6 -3.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0050 -0.6 -3.0 two component response regulator compare
Atu0181 -0.6 -2.0 hypothetical protein compare
Atu1364 -0.6 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2286 -0.6 -0.7 hypothetical protein compare
Atu2795 -0.6 -2.6 cobalamin biosynthetic protein compare
Atu5164 -0.6 -0.5 type IV secretion protein AvhB3 compare
Atu8156 -0.6 -1.2 hypothetical protein compare
Atu2804 -0.6 -4.0 cobaltochelatase subunit compare
Atu1009 -0.6 -1.5 hypothetical protein compare
Atu0767 -0.6 -2.7 cytochrome c oxidase subunit II compare
Atu0051 -0.6 -2.6 two component sensor kinase compare
Atu6189 -0.6 -0.7 protein secretion chaperone compare
Atu2684 -0.6 -0.8 hypothetical protein compare
Atu3727 -0.6 -1.6 hypothetical protein compare
Atu2812 -0.6 -2.2 hypothetical protein compare
Atu1699 -0.6 -1.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu3491 -0.6 -2.0 hypothetical protein compare
Atu1076 -0.6 -1.7 colicin V production protein compare
Atu5148 -0.6 -1.8 hypothetical protein compare
Atu5451 -0.5 -0.5 hypothetical protein compare
Atu2192 -0.5 -0.9 hypothetical protein compare
Atu2035 -0.5 -2.7 acetolactate synthase, small subunit compare
Atu0966 -0.5 -1.5 hypothetical protein compare
Atu2640 -0.5 -2.1 hypothetical protein compare
Atu2770 -0.5 -2.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4740 -0.5 -2.1 zinc-binding dehydrogenase compare
Atu1714 -0.5 -1.1 exonuclease III compare
Atu4214 -0.5 -2.6 cold shock protein compare
Atu0291 -0.5 -2.9 hypothetical protein compare
Atu4502 -0.5 -3.2 cobalamin synthesis protein compare
Atu2205 -0.5 -1.9 transcriptional regulator, MarR family compare
Atu2236 -0.5 -2.0 adenine phosphoribosyltransferase compare
Atu2554 -0.5 -1.1 lysyl-tRNA synthetase compare
Atu0115 -0.5 -0.7 hypothetical protein compare
Atu0702 -0.5 -1.5 calcium-binding protein, regucalcin compare
Atu1285 -0.5 -2.8 metal dependent hydrolase compare
Atu1372 -0.5 -3.1 hypothetical protein compare
Atu2821 -0.5 -1.9 transcriptional regulator, GntR family compare
Atu8166 -0.5 -2.1 hypothetical protein compare
Atu5467 -0.5 -1.8 hypothetical protein compare
Atu1241 -0.5 -2.0 hypothetical protein compare
Atu3340 -0.5 -3.1 trehalose/maltose ABC transporter permease compare
Atu2258 -0.5 -1.8 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in carbon source experiments

For carbon source Betanin across organisms