Experiment set2IT085 for Agrobacterium fabrum C58

Compare to:

Betanin carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu4896 +2.4 6.8 acetyltransferase compare
Atu3011 +2.2 8.5 ArsR family transcriptional regulator compare
Atu3001 +2.1 6.0 hypothetical protein compare
Atu4897 +2.1 5.2 hypothetical protein compare
Atu4894 +1.7 10.7 transposase compare
Atu3017 +1.6 3.1 phosphoglyceromutase compare
Atu4893 +1.6 6.8 hypothetical protein compare
Atu3010 +1.5 9.2 hypothetical protein compare
Atu4892 +1.5 11.6 hypothetical protein compare
Atu4888 +1.5 5.1 hypothetical protein compare
Atu4890 +1.4 3.8 IS426 transposase compare
Atu3014 +1.4 3.9 hypothetical protein compare
Atu3012 +1.4 3.6 hypothetical protein compare
Atu3006 +1.4 6.5 hypothetical protein compare
Atu3016 +1.4 8.3 phosphoglyceromutase compare
Atu4878 +1.3 6.2 hypothetical protein compare
Atu8202 +1.3 7.1 hypothetical protein compare
Atu3019 +1.3 7.5 hypothetical protein compare
Atu3013 +1.3 6.7 hypothetical protein compare
Atu3009 +1.2 2.3 exopolysaccharide production protein compare
Atu3015 +1.2 8.1 hypothetical protein compare
Atu4881 +1.2 8.0 hypothetical protein compare
Atu4889 +1.2 5.7 hypothetical protein compare
Atu4875 +1.2 5.6 hypothetical protein compare
Atu0941 +1.2 1.5 hypothetical protein compare
Atu3023 +1.1 7.6 sugar ABC transporter permease compare
Atu4864 +1.1 5.5 MarR family transcriptional regulator compare
Atu1236 +1.0 6.9 polysaccharide biosynthesis glycosyltransferase compare
Atu3020 +1.0 6.3 GntR family transcriptional regulator compare
Atu3021 +1.0 7.0 sugar ABC transporter ATPase compare
Atu4876 +1.0 7.3 oxidoreductase compare
Atu3018 +1.0 4.5 hypothetical protein compare
Atu4879 +1.0 6.8 hypothetical protein compare
Atu3026 +1.0 5.5 short chain dehydrogenase compare
Atu3028 +1.0 5.8 hypothetical protein compare
Atu3024 +0.9 7.3 sugar ABC transporter permease compare
Atu4880 +0.9 6.7 AraC family transcriptional regulator compare
Atu4877 +0.9 6.5 short-chain dehydrogenase compare
Atu8093 +0.9 4.4 hypothetical protein compare
Atu3027 +0.9 6.2 dehydrogenase compare
Atu4872 +0.9 6.8 LysR family transcriptional regulator compare
Atu3022 +0.9 5.7 sugar ABC transporter permease compare
Atu4391 +0.9 1.5 nitric oxide reductase NorE protein compare
Atu4870 +0.8 5.8 NADP-dependent quinone oxidoreductase compare
Atu1235 +0.8 6.6 hypothetical protein compare
Atu0573 +0.8 4.9 transcriptional regulator compare
Atu4882 +0.8 2.4 hypothetical protein compare
Atu3029 +0.8 4.9 glucarate dehydratase compare
Atu3025 +0.8 6.7 oligo alginate lyase compare
Atu2372 +0.8 4.7 UDP-hexose transferase compare
Atu0576 +0.8 4.9 flagellar hook-associated protein compare
Atu1240 +0.8 5.5 hypothetical protein compare
Atu8087 +0.8 1.2 putative peptidoglycan binding protein compare
Atu4873 +0.8 4.8 TetR family transcriptional regulator compare
Atu0558 +0.8 5.4 flagellar basal body rod protein compare
Atu4884 +0.8 3.2 hypothetical protein compare
Atu2373 +0.8 6.3 UDP-hexose transferase compare
Atu0530 +0.8 5.1 UDP-galactose 4-epimerase compare
Atu4887 +0.8 3.2 hypothetical protein compare
Atu0551 +0.8 3.0 flagellar protein FLGA precursor compare
Atu0585 +0.8 4.1 hypothetical protein compare
Atu4874 +0.8 4.6 hypothetical protein compare
Atu1238 +0.8 4.8 polysaccharide export protein compare
Atu2439 +0.8 1.2 hypothetical protein compare
Atu1004 +0.8 2.7 hypothetical protein compare
Atu4866 +0.8 5.4 hypothetical protein compare
Atu0477 +0.8 1.9 hypothetical protein compare
Atu0554 +0.8 4.4 flagellar basal-body rod protein compare
Atu6131 +0.8 3.7 TraR Antiactivator compare
Atu0546 +0.8 3.5 flagellar biosynthetic protein compare
Atu1592 +0.7 1.9 hypothetical protein compare
Atu0575 +0.7 5.7 flagellar hook associated protein compare
Atu0568 +0.7 4.6 hypothetical protein compare
Atu4166 +0.7 2.6 UDP-glucose 4-epimerase compare
Atu3034 +0.7 4.1 ROK family transcriptional regulator compare
Atu0824 +0.7 1.3 hypothetical protein compare
Atu0574 +0.7 5.7 flagellar hook protein compare
Atu0583 +0.7 4.9 hypothetical protein compare
Atu0579 +0.7 4.3 hook formation protein compare
Atu1237 +0.7 5.3 glycosyl transferase compare
Atu1189 +0.7 3.4 hypothetical protein compare
Atu0557 +0.7 5.6 flagellum-specific ATP synthase compare
Atu1980 +0.7 2.3 hypothetical protein compare
Atu0560 +0.7 5.5 flagellar motor protein compare
Atu0564 +0.7 4.7 flagellar biosynthetic protein compare
Atu1503 +0.7 1.2 hypothetical protein compare
Atu0582 +0.7 4.7 flagellar biosynthetic protein FLIR compare
Atu8188 +0.7 4.6 hypothetical protein compare
Atu3860 +0.7 5.9 hypothetical protein compare
Atu0555 +0.7 3.9 flagellar basal-body rod protein FlgB compare
Atu3708 +0.7 5.3 outer surface protein compare
Atu4865 +0.7 4.7 oxidoreductase compare
Atu4859 +0.7 5.1 hypothetical protein compare
Atu4867 +0.7 4.7 hypothetical protein compare
Atu3036 +0.7 4.0 dipeptide ABC transporter permease compare
Atu0580 +0.6 2.1 flagellar biosynthetic protein compare
Atu2377 +0.6 5.4 succinoglycan biosynthesis transport protein compare
Atu0523 +0.6 5.3 flagellar M-ring protein compare
Atu3033 +0.6 4.2 hypothetical protein compare
Atu4862 +0.6 5.0 IS21 family transposase compare
Atu0548 +0.6 4.3 flagellar L-ring protein precursor compare
Atu3008 +0.6 1.0 hypothetical protein compare
Atu0550 +0.6 5.4 flagellar P-ring protein precursor compare
Atu3039 +0.6 5.0 hydantoinase beta subunit-like protein compare
Atu3037 +0.6 3.5 dipeptide ABC transporter permease compare
Atu2375 +0.6 3.8 UDP-hexose transferase compare
Atu0578 +0.6 2.2 FlbT post-transcriptional regulator of flagellin compare
Atu3035 +0.6 5.4 two component response regulator compare
Atu4869 +0.6 3.0 hypothetical protein compare
Atu4868 +0.6 4.6 oxidoreductase compare
Atu3777 +0.6 4.8 hypothetical protein compare
Atu5517 +0.6 2.4 hypothetical protein compare
Atu3038 +0.6 4.0 dipeptide ABC transporter ATPase compare
Atu3045 +0.6 2.0 hypothetical protein compare
Atu0553 +0.6 4.5 flagellar hook-basal body complex protein compare
Atu0562 +0.6 2.0 flagellar motor switch protein FliN compare
Atu0563 +0.6 4.3 flagellar motor switch protein FliG compare
Atu4582 +0.6 2.5 ferredoxin compare
Atu0276 +0.6 2.6 hypothetical protein compare
Atu0584 +0.6 4.1 hypothetical protein compare
Atu1291 +0.6 1.3 hypothetical protein compare
Atu0561 +0.6 3.6 flagellar motor switch protein compare
Atu0518 +0.6 4.4 chemotaxis methyltransferase compare
Atu0581 +0.6 4.7 flagellar biosynthesis protein compare
Atu0549 +0.6 3.0 hypothetical protein compare
Atu0520 +0.6 2.0 chemotaxis receiver protein compare
Atu1358 +0.6 2.5 hypothetical protein compare
Atu6186 +0.6 2.3 virA/G regulated protein compare
Atu0519 +0.6 4.2 protein-glutamate methylesterase compare
Atu0480 +0.5 4.5 polysaccharide biosynthesis protein compare
Atu0422 +0.5 0.9 ABC transporter, membrane spanning protein compare
Atu8029 +0.5 1.4 hypothetical protein compare
Atu1060 +0.5 4.1 two component response regulator compare
Atu0590 +0.5 3.3 transcriptional regulator repressor compare
Atu3032 +0.5 2.2 hypothetical protein compare
Atu0464 +0.5 3.4 hypothetical protein compare
Atu1239 +0.5 3.9 exopolysaccharide production protein compare
Atu4861 +0.5 3.8 IS21 family transposase compare
Atu5034 +0.5 1.9 hypothetical protein compare
Atu3461 +0.5 1.7 GntR family transcriptional regulator compare
Atu1098 +0.5 1.4 hypothetical protein compare
Atu0517 +0.5 4.2 Chemotaxis protein histidine kinase compare
Atu2617 +0.5 1.9 chemotaxis protein compare
Atu1387 +0.5 2.0 transcriptional regulator, GntR family compare
Atu0922 +0.5 1.8 hypothetical protein compare
Atu8036 +0.5 2.0 protein YBGT-like protein compare
Atu0471 +0.5 1.7 hypothetical protein compare
Atu8053 +0.5 1.8 hypothetical protein compare
Atu4072 +0.5 1.3 nodulation protein N compare
Atu1607 +0.5 1.9 DNA repair protein compare
Atu0809 +0.5 1.1 hypothetical protein compare
Atu3030 +0.5 2.4 hypothetical protein compare
Atu4858 +0.5 4.1 virulence virD4-like protein compare
Atu0524 +0.5 2.4 transcriptional regulator, LuxR family compare
Atu3042 +0.5 3.4 hypothetical protein compare
Atu3041 +0.5 3.9 dipeptide ABC transporter substrate-binding protein compare
Atu2378 +0.5 2.0 hypothetical protein compare
Atu1260 +0.5 1.2 hypothetical protein compare
Atu8032 +0.5 1.4 hypothetical protein compare
Atu3048 +0.5 3.3 oligopeptide ABC transporter permease compare
Atu0577 +0.5 2.3 FLAF protein compare
Atu0516 +0.5 2.6 chemotaxis receiver protein compare
Atu1566 +0.5 0.6 hypothetical protein compare
Atu3663 +0.5 1.2 hypothetical protein compare
Atu1892 +0.5 1.6 hypothetical protein compare
Atu8096 +0.5 1.2 hypothetical protein compare
Atu0755 +0.5 1.3 hypothetical protein compare
Atu2041 +0.5 1.4 acetyltransferase compare
Atu0571 +0.5 3.4 chemotaxis MotD protein compare
Atu5045 +0.5 1.0 hypothetical protein compare
Atu0463 +0.4 2.1 hypothetical protein compare
Atu4854 +0.4 2.0 hypothetical protein compare
Atu0777 +0.4 0.6 hypothetical protein compare
Atu0552 +0.4 3.5 flagellar basal-body rod protein compare
Atu0566 +0.4 1.1 hypothetical protein compare
Atu5088 +0.4 0.6 hypothetical protein compare
Atu0528 +0.4 1.9 large conductance mechanosensitive channel protein compare
Atu1836 +0.4 1.0 hypothetical protein compare
Atu3044 +0.4 2.3 asparaginase compare
Atu0421 +0.4 1.0 ABC transporter, membrane spanning protein compare
Atu0386 +0.4 1.2 hypothetical protein compare
Atu0482 +0.4 3.0 polysaccharide deacetylase compare
Atu1219 +0.4 0.4 hypothetical protein compare
Atu1389 +0.4 2.3 ABC transporter, membrane spanning protein compare
Atu4856 +0.4 3.0 nucleotidyltransferase compare
Atu3031 +0.4 0.8 hypothetical protein compare
Atu6036 +0.4 0.5 entry-exclusion protein compare
Atu2806 +0.4 1.9 hypothetical protein compare
Atu3636 +0.4 3.1 hypothetical protein compare
Atu3047 +0.4 3.1 oligopeptide ABC transporter permease compare
Atu2117 +0.4 2.1 lytic murein transglycosylase compare
Atu8054 +0.4 0.3 hypothetical protein compare
Atu0514 +0.4 2.7 methyl-accepting chemotaxis protein compare
Atu2694 +0.4 1.4 hypothetical protein compare
Atu0521 +0.4 3.4 methyl-accepting chemotaxis protein compare
Atu1343 +0.4 1.9 hypothetical protein compare
Atu3049 +0.4 2.8 oligopeptide ABC transporter substrate-binding protein compare
Atu3052 +0.4 2.2 MarR family transcriptional regulator compare
Atu0515 +0.4 2.6 hypothetical protein compare
Atu3040 +0.4 3.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in carbon source experiments

For carbon source Betanin across organisms