Experiment set2IT084 for Agrobacterium fabrum C58

Compare to:

Betanin carbon source

200 most important genes:

  gene name fitness t score description  
Atu3754 -8.6 -6.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0038 -7.8 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -7.1 -9.8 acetolactate synthase III, large subunit compare
Atu1307 -7.0 -8.3 dihydroorotase compare
Atu0099 -6.9 -9.5 prephenate dehydratase compare
Atu1844 -6.8 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1588 -6.6 -9.0 homoserine dehydrogenase compare
Atu1075 -6.5 -6.4 amidophosphoribosyltransferase compare
Atu0486 -6.5 -6.4 dihydroorotate dehydrogenase compare
Atu3885 -6.5 -6.4 inositol monophosphatase compare
Atu1140 -6.5 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0432 -6.4 -9.8 O-succinylhomoserine sulfhydrylase compare
Atu2718 -6.3 -7.5 homoserine O-succinyltransferase compare
Atu2289 -6.2 -18.8 anthranilate synthase component I and II compare
Atu1141 -6.2 -6.9 Phosphoribosylglycinamide synthetase compare
Atu0399 -6.0 -5.8 dihydroorotase compare
Atu0679 -5.9 -7.0 ATP phosphoribosyltransferase compare
Atu1687 -5.9 -9.8 anthranilate phosphoribosyltransferase compare
Atu0400 -5.8 -6.9 orotate phosphoribosyltransferase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -5.8 -5.6 histidyl-tRNA synthetase compare
Atu1750 -5.7 -8.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -5.6 -7.7 histidinol dehydrogenase compare
Atu1308 -5.6 -7.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2791 -5.5 -9.7 3-isopropylmalate dehydrogenase compare
Atu2709 -5.5 -18.7 3-isopropylmalate dehydratase, large subunit compare
Atu3739 -5.4 -2.9 phosphoglycerate kinase compare
Atu0298 -5.3 -8.2 orotidine 5 compare
Atu2264 -5.3 -14.0 2-isopropylmalate synthase compare
Atu0647 -5.3 -7.2 phosphoribosylamine--glycine ligase compare
Atu1205 -5.3 -14.8 threonine dehydratase compare
Atu3707 -5.1 -4.7 phosphoserine aminotransferase compare
Atu2040 -5.1 -7.0 phosphoserine phosphatase compare
Atu3706 -5.1 -9.4 D-3-phosphoglycerate dehydrogenase compare
Atu2790 -5.1 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu0039 -4.7 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1845 -4.6 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu3755 -4.6 -7.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3783 -4.5 -19.6 glutamate synthase subunit beta compare
Atu2548 -4.5 -18.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1850 -4.4 -5.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1688 -4.2 -7.5 indole-3-glycerol-phosphate synthase compare
Atu3784 -4.2 -23.6 glutamate synthase large subunit compare
Atu0598 -3.9 -12.8 phosphogluconate dehydratase compare
Atu3469 -3.7 -3.6 phosphoglyceromutase compare
Atu2015 -3.7 -15.8 aminotransferase compare
Atu1589 -3.6 -9.8 aminotransferase, class I compare
Atu3763 -3.4 -3.2 hypothetical protein compare
Atu2747 -3.3 -10.1 hypothetical protein compare
Atu2726 -3.3 -18.6 pyruvate carboxylase compare
Atu0769 -3.1 -3.1 protoheme IX farnesyltransferase compare
Atu0641 -3.1 -5.5 hypothetical protein compare
Atu1686 -3.0 -17.6 peptidyl-prolyl cis-trans isomerse D compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -2.8 -16.4 methionine synthase compare
Atu0876 -2.7 -2.4 superoxide dismutase compare
Atu3482 -2.5 -8.4 pantoate--beta-alanine ligase compare
Atu3483 -2.5 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1030 -2.4 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0434 -2.3 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1359 -2.3 -1.8 dnaK deletion suppressor protein compare
Atu2650 -2.1 -11.3 glycerol-3-phosphate dehydrogenase compare
Atu3997 -2.1 -13.9 biotin synthetase compare
Atu0029 -2.0 -5.8 S-adenosylhomocysteine hydrolase compare
Atu1446 -2.0 -3.3 two component response regulator compare
Atu0401 -2.0 -7.3 fructokinase compare
Atu0723 -2.0 -2.2 FAD dependent oxidoreductase compare
Atu1163 -2.0 -2.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8115 -1.9 -4.9 Hypothetical Protein compare
Atu4075 -1.7 -7.4 glycogen synthase compare
Atu1456 -1.7 -8.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2057 -1.7 -3.8 DNA helicase II compare
Atu1457 -1.6 -3.3 hypothetical protein compare
Atu3998 -1.6 -11.0 8-amino-7-oxononanoate synthase compare
Atu1454 -1.6 -6.7 siroheme synthase compare
Atu6114 -1.6 -2.7 hypothetical protein compare
Atu4000 -1.6 -10.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3730 -1.6 -2.0 hypothetical protein compare
Atu0184 -1.5 -1.9 glucokinase compare
Atu1182 -1.5 -2.7 hypothetical protein compare
Atu0777 -1.4 -1.3 hypothetical protein compare
Atu3289 -1.4 -3.5 thiamine-phosphate pyrophosphorylase compare
Atu6098 -1.4 -1.0 transcriptional regulator, HTH family compare
Atu3999 -1.3 -2.2 dithiobiotin synthetase compare
Atu1455 -1.3 -3.8 hypothetical protein compare
Atu3288 -1.3 -4.8 hydroxyethylthiazole kinase compare
Atu3290 -1.1 -5.6 phosphomethylpyrimidine kinase compare
Atu5115 -1.1 -1.7 hypothetical protein compare
Atu2125 -1.1 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0031 -1.1 -1.5 PTS system, IIA component compare
Atu4317 -1.1 -3.4 TetR family transcriptional regulator compare
Atu0141 -1.1 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu1679 -1.1 -2.6 peptidyl prolyl cis-trans isomerase compare
Atu4098 -1.1 -6.1 quinolinate synthetase compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu4616 -1.0 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu4773 -1.0 -1.0 two component response regulator compare
Atu1470 -1.0 -1.3 Camphor resistance protein compare
Atu0361 -1.0 -2.0 transcriptional regulator compare
Atu0912 -1.0 -1.7 Na+/H+ antiporter compare
Atu2376 -1.0 -0.8 hypothetical protein compare
Atu0086 -1.0 -1.2 ribosome-binding factor A compare
Atu4001 -1.0 -5.1 3-oxoacyl-ACP synthase compare
Atu0185 -1.0 -3.8 methylglyoxal synthase compare
Atu8181 -1.0 -2.5 hypothetical protein compare
Atu1573 -1.0 -1.5 hypothetical protein compare
Atu0894 -1.0 -2.2 ABC transporter, membrane spanning protein compare
Atu2123 -0.9 -5.2 methylenetetrahydrofolate reductase compare
Atu4514 -0.9 -4.0 RpiR family transcriptional regulator compare
Atu0718 -0.9 -2.0 hypothetical protein compare
Atu0592 -0.9 -3.9 ABC transporter, membrane spanning protein compare
Atu5114 -0.9 -2.9 hypothetical protein compare
Atu2569 -0.9 -4.8 thiamine biosynthesis protein compare
Atu3750 -0.9 -1.5 thiamine-phosphate pyrophosphorylase compare
Atu3183 -0.9 -1.0 hypothetical protein compare
Atu2205 -0.9 -4.4 transcriptional regulator, MarR family compare
Atu1103 -0.9 -1.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2464 -0.9 -2.5 formyltetrahydrofolate deformylase compare
Atu0566 -0.9 -1.6 hypothetical protein compare
Atu2127 -0.9 -4.9 L-carnitine dehydratase compare
Atu3609 -0.9 -3.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3731 -0.9 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
Atu2286 -0.9 -1.8 hypothetical protein compare
Atu2442 -0.8 -2.4 hypothetical protein compare
Atu0591 -0.8 -6.3 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu5073 -0.8 -4.9 pyridoxal phosphate biosynthesis protein compare
Atu0595 -0.8 -5.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1685 -0.8 -1.0 hypothetical protein compare
Atu8012 -0.8 -1.7 hypothetical protein compare
Atu4096 -0.8 -4.1 nicotinate-nucleotide pyrophosphorylase compare
Atu0346 -0.8 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu2821 -0.8 -3.7 transcriptional regulator, GntR family compare
Atu1447 -0.7 -1.6 two component sensor kinase compare
Atu1364 -0.7 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1077 -0.7 -2.9 DNA repair protein compare
Atu0149 -0.7 -2.3 enoyl-(acyl-carrier-protein) reductase compare
Atu0703 -0.7 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3598 -0.7 -1.5 thiol:disulfide interchange protein compare
Atu2808 -0.7 -3.6 cobyric acid synthase compare
Atu2432 -0.7 -1.3 hypothetical protein compare
Atu1677 -0.7 -2.8 queuine tRNA-ribosyltransferase compare
Atu1748 -0.7 -3.9 NIFU-like protein compare
Atu3627 -0.7 -1.0 hypothetical protein compare
Atu1417 -0.7 -3.7 enoyl-CoA hydratase compare
Atu2802 -0.7 -3.3 precorrin-8X methylmutase compare
Atu2795 -0.7 -4.0 cobalamin biosynthetic protein compare
Atu0085 -0.7 -2.5 tRNA pseudouridine 55 synthase compare
Atu2207 -0.7 -1.7 two component sensor kinase compare
Atu5152 -0.7 -2.4 hypothetical protein compare
Atu4097 -0.7 -4.0 L-aspartate oxidase compare
Atu5427 -0.7 -1.9 hypothetical protein compare
Atu2131 -0.7 -3.8 hypothetical protein compare
Atu2578 -0.7 -2.6 cAMP-dependent protein kinase regulatory subunit compare
Atu2439 -0.7 -0.8 hypothetical protein compare
Atu0142 -0.6 -2.5 cytochrome o ubiquinol oxidase subunit II compare
Atu1354 -0.6 -0.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2801 -0.6 -2.1 precorrin-2 C20 methyltransferase compare
Atu3712 -0.6 -1.2 hypothetical protein compare
Atu1463 -0.6 -3.2 glycine cleavage system component H compare
Atu3692 -0.6 -3.3 sigma factor compare
Atu3727 -0.6 -1.5 hypothetical protein compare
Atu0188 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu8088 -0.6 -1.2 hypothetical protein compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu1223 -0.6 -1.1 hypothetical protein compare
Atu1026 -0.6 -1.7 hypothetical protein compare
Atu2209 -0.6 -1.3 pyrroline-5-carboxylate reductase compare
Atu2201 -0.6 -1.4 hydrolase compare
Atu8082 -0.6 -0.7 hypothetical protein compare
Atu1760 -0.6 -0.9 hypothetical protein compare
Atu1518 -0.6 -2.2 transcriptional regulator, Fur family compare
Atu1021 -0.6 -1.7 outer membrane protein compare
Atu5451 -0.6 -0.7 hypothetical protein compare
Atu2035 -0.6 -3.9 acetolactate synthase, small subunit compare
Atu0593 -0.6 -2.8 ABC transporter, membrane spanning protein compare
Atu6189 -0.6 -0.7 protein secretion chaperone compare
Atu0727 -0.6 -3.7 ferredoxin I compare
Atu6120 -0.6 -2.6 HNS-type DNA binding protein compare
Atu1812 -0.6 -2.4 hypothetical protein compare
Atu1904 -0.6 -1.3 transcriptional regulator compare
Atu2796 -0.6 -2.4 precorrin-4 C11-methyltransferase compare
Atu2200 -0.5 -1.5 cold shock protein compare
Atu1469 -0.5 -1.8 hypothetical protein compare
Atu8034 -0.5 -2.5 hypothetical protein compare
Atu5437 -0.5 -1.7 hypothetical protein compare
Atu1285 -0.5 -3.1 metal dependent hydrolase compare
Atu2124 -0.5 -2.1 transcriptional regulator, ArsR family compare
Atu1232 -0.5 -1.3 hypothetical protein compare
Atu1676 -0.5 -2.5 para-aminobenzoate synthase component I compare
Atu1260 -0.5 -1.0 hypothetical protein compare
Atu4530 -0.5 -3.4 TetR family transcriptional regulator compare
Atu1439 -0.5 -1.1 hypothetical protein compare
Atu2800 -0.5 -1.6 precorrin-3B C17-methyltransferase compare
Atu0925 -0.5 -1.6 hypothetical protein compare
Atu3666 -0.5 -2.4 hypothetical protein compare
Atu3759 -0.5 -0.9 hypothetical protein compare
Atu1462 -0.5 -3.3 glycine cleavage system protein P2 compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Betanin in Agrobacterium fabrum C58

For carbon source Betanin across organisms