Experiment set2IT083 for Pseudomonas simiae WCS417

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_23805 -7.5 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_25720 -6.1 -8.3 anthranilate synthase component II compare
PS417_27705 -5.9 -2.6 amino acid dehydrogenase compare
PS417_18560 -5.6 -13.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01855 -5.6 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -5.5 -7.5 3-isopropylmalate dehydrogenase compare
PS417_26740 -5.5 -13.2 homoserine acetyltransferase compare
PS417_23800 -5.4 -13.0 ketol-acid reductoisomerase compare
PS417_04415 -5.3 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -5.2 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_12855 -5.2 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18595 -5.2 -4.4 3-isopropylmalate dehydratase compare
PS417_02510 -5.2 -11.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18530 -5.0 -9.0 O-succinylhomoserine sulfhydrylase compare
PS417_28220 -4.9 -3.3 LysR family transcriptional regulator compare
PS417_27795 -4.8 -2.1 orotate phosphoribosyltransferase compare
PS417_01850 -4.8 -10.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25725 -4.8 -14.5 anthranilate synthase component I compare
PS417_24745 -4.8 -7.2 gamma-glutamyl phosphate reductase compare
PS417_26745 -4.7 -6.8 methionine biosynthesis protein MetW compare
PS417_06375 -4.7 -2.1 deoxycytidine triphosphate deaminase compare
PS417_04420 -4.7 -13.4 histidinol dehydrogenase compare
PS417_18600 -4.6 -4.8 isopropylmalate isomerase compare
PS417_23810 -4.5 -12.6 acetolactate synthase 3 catalytic subunit compare
PS417_16465 -4.4 -11.9 sirohydrochlorin ferrochelatase compare
PS417_27040 -4.3 -5.3 3-phosphoglycerate dehydrogenase compare
PS417_01565 -4.0 -5.7 imidazole glycerol phosphate synthase compare
PS417_26890 -4.0 -6.9 dihydroxy-acid dehydratase compare
PS417_00185 -4.0 -6.6 tryptophan synthase subunit beta compare
PS417_12290 -4.0 -9.5 sulfite reductase compare
PS417_25710 -4.0 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_02005 -4.0 -15.3 glutamate synthase compare
PS417_02415 -3.9 -8.1 phosphoserine phosphatase compare
PS417_27195 -3.9 -2.3 N-acetylglutamate synthase compare
PS417_25715 -3.8 -7.4 anthranilate phosphoribosyltransferase compare
PS417_26995 -3.7 -13.0 phosphoserine phosphatase compare
PS417_07640 -3.7 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -3.6 -1.9 imidazole glycerol phosphate synthase compare
PS417_05595 -3.6 -7.5 ornithine carbamoyltransferase compare
PS417_20160 -3.6 -3.9 cysteine synthase compare
PS417_01605 -3.5 -3.4 phosphoglycerate mutase compare
PS417_27835 -3.5 -12.8 endoribonuclease compare
PS417_20125 -3.5 -5.2 phosphoribosylglycinamide formyltransferase compare
PS417_01570 -3.4 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23545 -3.4 -3.8 gamma-glutamyl kinase compare
PS417_23110 -3.3 -6.3 2-isopropylmalate synthase compare
PS417_26730 -3.2 -2.0 pyrroline-5-carboxylate reductase compare
PS417_27710 -3.1 -6.2 AsnC family transcriptional regulator conserved
PS417_02000 -3.0 -14.0 glutamate synthase compare
PS417_20985 -2.9 -4.7 porin compare
PS417_21700 -2.9 -7.6 arginine N-succinyltransferase compare
PS417_24155 -2.7 -4.5 ATP-binding protein compare
PS417_23995 -2.5 -1.5 preprotein translocase subunit SecG compare
PS417_04365 -2.4 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00180 -2.2 -3.0 tryptophan synthase subunit alpha compare
PS417_08125 -2.1 -1.8 prephenate dehydratase compare
PS417_21705 -2.1 -7.2 arginine N-succinyltransferase compare
PS417_20610 -2.0 -2.7 hypothetical protein compare
PS417_18690 -1.9 -4.5 aromatic amino acid aminotransferase compare
PS417_05570 -1.8 -5.4 DeoR faimly transcriptional regulator compare
PS417_03925 -1.8 -6.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_05405 -1.8 -8.5 L-alanine and D-alanine permease (from data) conserved
PS417_08230 -1.7 -3.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_24835 -1.7 -5.1 hypothetical protein compare
PS417_01210 -1.7 -8.4 hypothetical protein compare
PS417_21125 -1.7 -8.6 phosphoadenosine phosphosulfate reductase compare
PS417_08245 -1.6 -1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 -1.6 -5.4 acetolactate synthase compare
PS417_23770 -1.6 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_19600 -1.6 -2.3 exonuclease compare
PS417_27435 -1.5 -5.5 polyphosphate kinase compare
PS417_22385 -1.5 -10.9 quinolinate synthase A compare
PS417_21020 -1.5 -11.1 phosphoenolpyruvate synthase conserved
PS417_18590 -1.5 -2.4 SAM-dependent methyltransferase compare
PS417_03465 -1.5 -2.3 type III secretion protein compare
PS417_08200 -1.4 -4.4 hypothetical protein compare
PS417_08220 -1.4 -1.4 epimerase compare
PS417_27010 -1.4 -9.0 threonine dehydratase compare
PS417_01560 -1.4 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_08580 -1.4 -6.8 histidine kinase compare
PS417_23380 -1.4 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_08195 -1.3 -7.6 hypothetical protein compare
PS417_07170 -1.3 -3.1 hypothetical protein compare
PS417_01710 -1.3 -6.1 histidine utilization repressor compare
PS417_26040 -1.3 -5.6 malate synthase compare
PS417_07455 -1.3 -2.4 glutamine amidotransferase compare
PS417_01995 -1.3 -2.3 hypothetical protein compare
PS417_26985 -1.2 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26990 -1.2 -2.0 RNA pyrophosphohydrolase compare
PS417_21630 -1.2 -3.2 magnesium transporter compare
PS417_07875 -1.2 -1.4 hypothetical protein compare
PS417_23360 -1.1 -1.3 hypothetical protein compare
PS417_20340 -1.1 -1.8 hypothetical protein compare
PS417_21655 -1.1 -1.8 aspartate kinase compare
PS417_16990 -1.1 -5.0 acyl-CoA dehydrogenase compare
PS417_22570 -1.1 -1.3 H-NS histone compare
PS417_05455 -1.1 -5.1 XRE family transcriptional regulator compare
PS417_20665 -1.1 -4.5 hypothetical protein compare
PS417_06945 -1.0 -1.9 membrane protein compare
PS417_13990 -1.0 -2.8 LysR family transcriptional regulator compare
PS417_14075 -1.0 -2.5 hypothetical protein compare
PS417_13510 -1.0 -1.6 polyketide cyclase compare
PS417_26725 -1.0 -3.5 hypothetical protein compare
PS417_22445 -1.0 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_20030 -1.0 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23385 -1.0 -5.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_09420 -1.0 -2.3 LysR family transcriptional regulator compare
PS417_18425 -1.0 -1.7 sporulation protein compare
PS417_04585 -1.0 -1.7 hypothetical protein compare
PS417_06200 -1.0 -3.6 protein-PII uridylyltransferase compare
PS417_01915 -1.0 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17645 -0.9 -2.0 RND transporter compare
PS417_21690 -0.9 -4.8 N-succinylarginine dihydrolase compare
PS417_07595 -0.9 -2.4 PasA protein compare
PS417_23390 -0.9 -5.3 ubiquinol oxidase subunit II compare
PS417_10405 -0.9 -1.2 filamentous hemagglutinin compare
PS417_02690 -0.9 -4.9 N-acylglucosamine 2-epimerase compare
PS417_01290 -0.9 -1.7 ADP-ribose diphosphatase compare
PS417_26005 -0.9 -5.3 biotin synthase compare
PS417_22520 -0.9 -2.3 histidine kinase compare
PS417_26755 -0.9 -2.1 nucleoside-triphosphate diphosphatase compare
PS417_14455 -0.9 -2.4 polyketide cyclase compare
PS417_26540 -0.8 -4.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06645 -0.8 -5.4 RNA polymerase-associated protein RapA compare
PS417_13800 -0.8 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08155 -0.8 -2.1 integration host factor subunit beta compare
PS417_12355 -0.8 -2.2 magnesium chelatase compare
PS417_04270 -0.8 -4.8 ribonuclease G compare
PS417_15750 -0.8 -1.9 protease compare
PS417_23775 -0.8 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_06680 -0.8 -6.0 nuclease PIN compare
PS417_00295 -0.8 -5.4 hypothetical protein compare
PS417_07010 -0.8 -2.5 pseudouridine synthase compare
PS417_27875 -0.8 -4.6 histidine kinase compare
PS417_02160 -0.8 -1.3 hypothetical protein compare
PS417_22115 -0.8 -2.4 transcriptional regulator compare
PS417_07165 -0.8 -2.6 dihydrodipicolinate synthase compare
PS417_20635 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_08205 -0.8 -2.7 acetyltransferase compare
PS417_18435 -0.8 -1.9 hypothetical protein compare
PS417_11705 -0.7 -5.3 cyclic peptide transporter compare
PS417_20620 -0.7 -3.7 glycosyl transferase family 2 compare
PS417_24810 -0.7 -5.0 aldehyde dehydrogenase compare
PS417_21750 -0.7 -6.3 acetyl-CoA synthetase compare
PS417_23900 -0.7 -5.0 poly(A) polymerase compare
PS417_07000 -0.7 -1.9 hypothetical protein compare
PS417_28080 -0.7 -5.9 phosphate ABC transporter permease compare
PS417_06150 -0.7 -2.7 SAM-dependent methlyltransferase compare
PS417_01620 -0.7 -1.6 preprotein translocase subunit SecB compare
PS417_24500 -0.7 -3.2 DEAD/DEAH box helicase compare
PS417_11845 -0.7 -3.3 RpiR family transcriptional regulator compare
PS417_03145 -0.7 -2.0 acetyl-CoA acetyltransferase compare
PS417_18105 -0.7 -1.2 iron-dicitrate transporter substrate-binding subunit compare
PS417_25985 -0.7 -1.7 dethiobiotin synthetase compare
PS417_13490 -0.7 -1.7 hypothetical protein compare
PS417_23370 -0.7 -2.3 protoheme IX farnesyltransferase compare
PS417_19240 -0.7 -2.7 peptidase M42 compare
PS417_22535 -0.7 -3.1 ornithine acetyltransferase compare
PS417_05695 -0.7 -2.5 transcriptional regulator compare
PS417_01635 -0.7 -3.3 nitrogen regulation protein NR(I) compare
PS417_04425 -0.7 -3.9 histidinol-phosphate aminotransferase compare
PS417_15465 -0.7 -2.1 carboxynorspermidine decarboxylase compare
PS417_28075 -0.7 -2.8 phosphate ABC transporter permease compare
PS417_07175 -0.7 -2.2 beta-lactamase compare
PS417_02765 -0.6 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_09505 -0.6 -2.6 hypothetical protein compare
PS417_04410 -0.6 -0.8 hypothetical protein compare
PS417_25990 -0.6 -3.8 malonyl-CoA O-methyltransferase compare
PS417_12565 -0.6 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_19335 -0.6 -2.4 isochorismatase compare
PS417_07620 -0.6 -1.7 beta-hexosaminidase compare
PS417_19805 -0.6 -2.2 flagellar M-ring protein FliF compare
PS417_26695 -0.6 -1.2 uracil phosphoribosyltransferase compare
PS417_14200 -0.6 -1.9 hypothetical protein compare
PS417_09210 -0.6 -1.1 TetR family transcriptional regulator compare
PS417_26770 -0.6 -1.3 tRNA (guanine-N7)-methyltransferase compare
PS417_14940 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_08135 -0.6 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_28070 -0.6 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_05985 -0.6 -1.6 chemotaxis protein CheY compare
PS417_27035 -0.6 -2.5 FAD-linked oxidase compare
PS417_08540 -0.6 -2.2 RNA helicase compare
PS417_13170 -0.6 -2.9 multidrug DMT transporter permease compare
PS417_23950 -0.6 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_02555 -0.6 -5.3 exoribonuclease R compare
PS417_26000 -0.6 -3.4 8-amino-7-oxononanoate synthase compare
PS417_03705 -0.6 -1.2 2-alkenal reductase compare
PS417_21480 -0.6 -1.4 23S rRNA pseudouridylate synthase compare
PS417_19285 -0.6 -1.0 ankyrin compare
PS417_15090 -0.6 -1.1 hypothetical protein compare
PS417_08380 -0.6 -3.2 ABC transporter ATP-binding protein compare
PS417_12025 -0.6 -1.9 DSBA oxidoreductase compare
PS417_05010 -0.6 -1.6 IclR family transcriptional regulator compare
PS417_24790 -0.6 -2.0 hypothetical protein compare
PS417_10425 -0.6 -1.2 hypothetical protein compare
PS417_04860 -0.6 -4.0 ATPase compare
PS417_07015 -0.6 -2.0 helicase compare
PS417_24800 -0.6 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_22450 -0.6 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_16535 -0.6 -1.6 NUDIX hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Alanine in Pseudomonas simiae WCS417

For carbon source D-Alanine across organisms