Experiment set2IT083 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

D-Cellobiose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_1020 +1.8 3.3 hypothetical protein compare
Echvi_2193 +1.8 12.3 Transcriptional regulators compare
Echvi_4025 +1.3 3.3 hypothetical protein compare
Echvi_0035 +1.3 6.9 Domain of Unknown Function (DUF349). compare
Echvi_4595 +1.2 1.2 hypothetical protein compare
Echvi_2199 +1.2 1.1 hypothetical protein compare
Echvi_2503 +1.2 3.0 hypothetical protein compare
Echvi_4099 +1.2 2.2 hypothetical protein compare
Echvi_1900 +1.1 2.4 nitrite reductase [NAD(P)H], small subunit compare
Echvi_1603 +1.1 2.8 hypothetical protein compare
Echvi_2266 +1.1 9.0 Alanine dehydrogenase compare
Echvi_2217 +1.0 2.2 hypothetical protein compare
Echvi_3151 +1.0 2.6 Copper chaperone compare
Echvi_1227 +1.0 1.4 hypothetical protein compare
Echvi_4549 +1.0 2.6 Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_3934 +1.0 2.4 hypothetical protein compare
Echvi_0275 +1.0 1.8 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Echvi_4357 +1.0 3.2 Protein of unknown function (DUF3714). compare
Echvi_2586 +1.0 1.3 hypothetical protein compare
Echvi_1648 +0.9 2.0 hypothetical protein compare
Echvi_3287 +0.9 3.5 hypothetical protein compare
Echvi_1045 +0.9 5.5 Transcriptional regulator compare
Echvi_3910 +0.9 6.0 Transcriptional regulator/sugar kinase compare
Echvi_0626 +0.9 5.7 hypothetical protein compare
Echvi_0260 +0.9 2.5 Protein of unknown function (DUF3467). compare
Echvi_4081 +0.9 2.1 Malic enzyme compare
Echvi_0720 +0.9 1.5 hypothetical protein compare
Echvi_0114 +0.8 2.3 N-acetylmuramoyl-L-alanine amidase compare
Echvi_3347 +0.8 0.8 hypothetical protein compare
Echvi_1662 +0.8 2.5 hypothetical protein compare
Echvi_1829 +0.8 3.6 Protein-tyrosine-phosphatase compare
Echvi_0650 +0.8 1.7 thioredoxin compare
Echvi_2824 +0.8 6.7 hypothetical protein compare
Echvi_1343 +0.8 1.0 Predicted endonuclease containing a URI domain compare
Echvi_4587 +0.8 2.3 hypothetical protein compare
Echvi_4022 +0.8 1.9 hypothetical protein compare
Echvi_2365 +0.8 2.8 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_2833 +0.8 3.6 L-serine dehydratase, iron-sulfur-dependent, beta subunit compare
Echvi_1042 +0.8 2.2 hypothetical protein compare
Echvi_2309 +0.8 5.8 Outer membrane protein/protective antigen OMA87 compare
Echvi_1736 +0.8 1.7 hypothetical protein compare
Echvi_3595 +0.8 2.9 conserved hypothetical phage tail region protein compare
Echvi_1838 +0.8 0.9 hypothetical protein compare
Echvi_0431 +0.8 2.4 hypothetical protein compare
Echvi_4325 +0.7 3.1 hypothetical protein compare
Echvi_4366 +0.7 1.7 hypothetical protein compare
Echvi_3430 +0.7 0.8 hypothetical protein compare
Echvi_3717 +0.7 5.5 Outer membrane protein/protective antigen OMA87 compare
Echvi_3911 +0.7 6.0 alpha-1,2-mannosidase, putative compare
Echvi_4024 +0.7 2.1 hypothetical protein compare
Echvi_0776 +0.7 4.8 Sterol desaturase compare
Echvi_1752 +0.7 1.9 hypothetical protein compare
Echvi_0674 +0.7 5.6 hypothetical protein compare
Echvi_2243 +0.7 2.3 hypothetical protein compare
Echvi_0724 +0.7 1.2 hypothetical protein compare
Echvi_2084 +0.7 6.2 Uncharacterized protein conserved in bacteria compare
Echvi_3764 +0.7 1.1 Predicted transcriptional regulators compare
Echvi_2410 +0.7 2.1 Acetyltransferases compare
Echvi_4536 +0.7 3.8 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Echvi_4383 +0.7 1.1 hypothetical protein compare
Echvi_2371 +0.7 4.5 Sterol desaturase compare
Echvi_4573 +0.7 4.8 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_3922 +0.7 1.9 hypothetical protein compare
Echvi_0852 +0.7 5.6 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_2936 +0.7 2.3 Predicted transcriptional regulator compare
Echvi_4500 +0.7 1.9 Predicted membrane protein compare
Echvi_4334 +0.7 1.5 hypothetical protein compare
Echvi_3381 +0.6 5.9 Pregnancy-associated plasma protein-A. compare
Echvi_3483 +0.6 3.7 tRNA (guanine-N(7)-)-methyltransferase compare
Echvi_0813 +0.6 1.0 hypothetical protein compare
Echvi_0343 +0.6 2.3 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_4574 +0.6 2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_3304 +0.6 2.2 3-hydroxyacyl-CoA dehydrogenase compare
Echvi_1157 +0.6 2.1 hypothetical protein compare
Echvi_3046 +0.6 2.8 hypothetical protein compare
Echvi_1638 +0.6 1.2 hypothetical protein compare
Echvi_4375 +0.6 0.7 hypothetical protein compare
Echvi_2554 +0.6 0.9 hypothetical protein compare
Echvi_4618 +0.6 2.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Echvi_2373 +0.6 2.7 hypothetical protein compare
Echvi_3223 +0.6 2.2 Mn-dependent transcriptional regulator compare
Echvi_3814 +0.6 2.1 Uncharacterized conserved protein compare
Echvi_2298 +0.6 1.3 hypothetical protein compare
Echvi_3864 +0.6 3.5 Glycosyltransferase compare
Echvi_0169 +0.6 4.8 hypothetical protein compare
Echvi_0875 +0.6 1.7 hypothetical protein compare
Echvi_3184 +0.6 1.8 hypothetical protein compare
Echvi_1580 +0.6 3.9 Choline dehydrogenase and related flavoproteins compare
Echvi_1175 +0.6 4.2 Chloride channel protein EriC compare
Echvi_3590 +0.6 2.5 Phage baseplate assembly protein W compare
Echvi_1939 +0.6 1.7 Bacteroides conjugative transposon TraN protein compare
Echvi_1297 +0.6 1.3 hypothetical protein compare
Echvi_0590 +0.6 1.0 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
Echvi_0837 +0.6 1.4 RNA polymerase sigma factor, sigma-70 family compare
Echvi_0655 +0.6 3.8 hypothetical protein compare
Echvi_2381 +0.6 1.9 methylglyoxal synthase compare
Echvi_1247 +0.6 1.2 single stranded DNA-binding protein (ssb) compare
Echvi_0652 +0.6 2.9 Outer membrane protein compare
Echvi_2953 +0.6 1.1 Uncharacterized conserved protein compare
Echvi_1492 +0.6 1.1 hypothetical protein compare
Echvi_1201 +0.6 2.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_3126 +0.6 2.9 Fe2+-dicitrate sensor, membrane component compare
Echvi_4248 +0.6 1.6 hypothetical protein compare
Echvi_3670 +0.5 0.9 hypothetical protein compare
Echvi_1904 +0.5 2.1 hypothetical protein compare
Echvi_3472 +0.5 2.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_3221 +0.5 1.6 hypothetical protein compare
Echvi_3931 +0.5 2.7 N-acetyl-beta-hexosaminidase compare
Echvi_1538 +0.5 3.7 hypothetical protein compare
Echvi_4232 +0.5 2.1 Glycosyltransferase compare
Echvi_3803 +0.5 2.7 Response regulator of the LytR/AlgR family compare
Echvi_2408 +0.5 1.8 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Echvi_3657 +0.5 2.3 Fe2+-dicitrate sensor, membrane component compare
Echvi_0095 +0.5 2.6 3-oxoacyl-(acyl-carrier-protein) synthase compare
Echvi_0138 +0.5 4.2 hypothetical protein compare
Echvi_2194 +0.5 1.6 ADP-ribose pyrophosphatase compare
Echvi_1620 +0.5 2.0 L-rhamnose 1-epimerase compare
Echvi_1180 +0.5 1.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Echvi_4209 +0.5 2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_0368 +0.5 1.1 hypothetical protein compare
Echvi_1272 +0.5 1.8 Protein of unknown function (DUF2442). compare
Echvi_0429 +0.5 2.1 hypothetical protein compare
Echvi_2812 +0.5 2.8 hypothetical protein compare
Echvi_1835 +0.5 2.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Echvi_3300 +0.5 1.4 hypothetical protein compare
Echvi_4126 +0.5 2.4 AraC-type DNA-binding domain-containing proteins compare
Echvi_4097 +0.5 1.8 hypothetical protein compare
Echvi_0211 +0.5 0.8 hypothetical protein compare
Echvi_3456 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_4083 +0.5 4.8 hypothetical protein compare
Echvi_4544 +0.5 2.2 Microcystin-dependent protein compare
Echvi_3292 +0.5 0.4 hypothetical protein compare
Echvi_1646 +0.5 1.9 hypothetical protein compare
Echvi_2543 +0.5 1.2 hypothetical protein compare
Echvi_3594 +0.5 1.2 hypothetical protein compare
Echvi_0090 +0.5 0.9 Iron-sulfur cluster assembly accessory protein compare
Echvi_0199 +0.5 3.5 hypothetical protein compare
Echvi_3177 +0.5 1.3 hypothetical protein compare
Echvi_1115 +0.5 0.9 hypothetical protein compare
Echvi_3872 +0.5 0.6 SnoaL-like polyketide cyclase. compare
Echvi_3195 +0.5 0.9 hypothetical protein compare
Echvi_1285 +0.5 1.3 Transketolase, C-terminal subunit compare
Echvi_0197 +0.5 1.9 hypothetical protein compare
Echvi_1899 +0.5 3.4 hypothetical protein compare
Echvi_2594 +0.5 2.0 methyltransferase, FkbM family compare
Echvi_1725 +0.5 1.4 hypothetical protein compare
Echvi_3923 +0.5 3.2 Fe2+-dicitrate sensor, membrane component compare
Echvi_3820 +0.5 2.1 phosphoesterase, MJ0936 family compare
Echvi_0330 +0.5 1.5 hypothetical protein compare
Echvi_3805 +0.5 1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Echvi_0621 +0.5 4.1 gliding motility-associated protein GldM compare
Echvi_2185 +0.5 2.1 Protein of unknown function (DUF2874). compare
Echvi_1223 +0.5 2.1 Uncharacterized protein conserved in bacteria compare
Echvi_3835 +0.5 1.7 hypothetical protein compare
Echvi_1816 +0.5 1.5 Cytidine deaminase compare
Echvi_3057 +0.5 0.7 citrate synthase I (hexameric type) compare
Echvi_2829 +0.5 4.3 hypothetical protein compare
Echvi_2513 +0.5 1.7 Phenylalanine-4-hydroxylase compare
Echvi_0922 +0.5 2.0 Uncharacterized protein conserved in bacteria compare
Echvi_3800 +0.5 0.8 hypothetical protein compare
Echvi_2392 +0.5 2.4 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Echvi_1406 +0.5 0.6 hypothetical protein compare
Echvi_1224 +0.5 3.2 gliding motility-associated lipoprotein GldD compare
Echvi_3362 +0.5 2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Echvi_3377 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_3401 +0.5 1.2 hypothetical protein compare
Echvi_0299 +0.5 3.6 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_1516 +0.5 1.1 hypothetical protein compare
Echvi_4456 +0.4 2.1 Transposase DDE domain. compare
Echvi_1237 +0.4 1.5 Thiol-disulfide isomerase and thioredoxins compare
Echvi_3860 +0.4 1.9 hypothetical protein compare
Echvi_4639 +0.4 4.0 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_0514 +0.4 1.9 Uncharacterized membrane protein compare
Echvi_3584 +0.4 1.6 hypothetical protein compare
Echvi_2030 +0.4 1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Echvi_1821 +0.4 3.1 hypothetical protein compare
Echvi_0830 +0.4 2.9 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
Echvi_3773 +0.4 2.0 hypothetical protein compare
Echvi_1980 +0.4 0.8 hypothetical protein compare
Echvi_4332 +0.4 2.0 Predicted ATPase compare
Echvi_3444 +0.4 0.3 tRNA compare
Echvi_4606 +0.4 1.4 Protein of unknown function (DUF2721). compare
Echvi_2047 +0.4 2.3 RNA polymerase sigma factor, sigma-70 family compare
Echvi_1327 +0.4 1.7 endoribonuclease L-PSP, putative compare
Echvi_3853 +0.4 0.3 Predicted transcriptional regulators compare
Echvi_3822 +0.4 2.1 NAD-dependent aldehyde dehydrogenases compare
Echvi_4637 +0.4 1.3 6-pyruvoyl-tetrahydropterin synthase compare
Echvi_1158 +0.4 2.0 nicotinate-nucleotide pyrophosphorylase compare
Echvi_3152 +0.4 1.8 Predicted membrane protein (DUF2078). compare
Echvi_1495 +0.4 1.8 hypothetical protein compare
Echvi_0340 +0.4 1.0 ADP-ribose pyrophosphatase compare
Echvi_2555 +0.4 0.5 hypothetical protein compare
Echvi_2296 +0.4 2.5 Arabinose efflux permease compare
Echvi_1601 +0.4 1.0 hypothetical protein compare
Echvi_1585 +0.4 1.8 Uncharacterized conserved protein compare
Echvi_2168 +0.4 2.1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_3745 +0.4 1.6 hypothetical protein compare
Echvi_0096 +0.4 0.5 Predicted pyrophosphatase compare
Echvi_3600 +0.4 3.0 Superfamily II DNA and RNA helicases compare
Echvi_4165 +0.4 2.4 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in carbon source experiments

For carbon source D-Cellobiose across organisms