Experiment set2IT082 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Nalidixic acid sodium salt 0.03 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_03640 +8.1 8.9 TetR family transcriptional regulator compare
CA264_06345 +7.0 58.3 hypothetical protein compare
CA264_00015 +6.7 24.7 hypothetical protein compare
CA264_19860 +6.1 20.2 NifU family protein compare
CA264_13100 +5.3 12.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_01715 +5.2 25.3 4Fe-4S ferredoxin compare
CA264_01705 +4.9 36.0 NADH-quinone oxidoreductase subunit H compare
CA264_03635 +4.9 6.9 DoxX family protein compare
CA264_01735 +4.9 28.2 oxidoreductase compare
CA264_01720 +4.8 23.8 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
CA264_01730 +4.7 30.0 NADH-quinone oxidoreductase subunit L compare
CA264_01740 +4.5 11.4 proton-translocating NADH-quinone oxidoreductase subunit N compare
CA264_14900 +4.5 27.5 uvrA paralog in Bacteroidetes (from data) compare
CA264_12440 +4.4 7.9 methionyl-tRNA formyltransferase compare
CA264_08105 +4.4 20.6 NupC/NupG family nucleoside CNT transporter compare
CA264_11050 +4.3 22.0 methylmalonyl-CoA epimerase compare
CA264_01725 +4.2 18.1 NADH-quinone oxidoreductase subunit K compare
CA264_03870 +4.2 6.2 transcription elongation factor GreA compare
CA264_11200 +3.9 12.3 RNA degradosome polyphosphate kinase compare
CA264_10805 +3.8 11.8 NADPH-dependent oxidoreductase compare
CA264_03810 +3.6 10.1 hypothetical protein compare
CA264_13080 +3.5 6.1 aminodeoxychorismate lyase compare
CA264_12490 +3.5 20.7 phosphohydrolase compare
CA264_18290 +3.5 19.2 NADH dehydrogenase subunit D compare
CA264_14440 +3.4 5.7 glutamine cyclotransferase compare
CA264_07750 +3.4 6.4 elongation factor P compare
CA264_19110 +3.4 19.7 excinuclease ABC subunit B compare
CA264_18100 +3.3 15.6 ABC-ATPase UvrA compare
CA264_18260 +3.1 14.1 NADH-quinone oxidoreductase subunit C compare
CA264_07030 +3.1 12.6 UDP-glucose 4-epimerase compare
CA264_18250 +3.0 9.7 NADH-quinone oxidoreductase subunit B compare
CA264_04605 +3.0 17.4 hypothetical protein compare
CA264_06555 +3.0 7.3 hypothetical protein compare
CA264_01990 +2.9 7.8 tRNA-Lys compare
CA264_12055 +2.9 10.6 6-phosphofructokinase compare
CA264_09245 +2.8 4.0 hypothetical protein compare
CA264_18245 +2.8 7.9 NADH-quinone oxidoreductase subunit A compare
CA264_20110 +2.8 12.4 DNA helicase RecQ compare
CA264_20860 +2.7 16.5 site-specific DNA-methyltransferase compare
CA264_08880 +2.7 2.5 SAM-dependent methyltransferase compare
CA264_09230 +2.7 8.7 hydroxymethylglutaryl-CoA lyase compare
CA264_06460 +2.6 8.0 NUDIX domain-containing protein compare
CA264_20865 +2.6 16.7 restriction endonuclease compare
CA264_03170 +2.5 3.1 hypothetical protein compare
CA264_10930 +2.4 9.6 methylglutaconyl-CoA hydratase compare
CA264_07165 +2.4 2.9 hypothetical protein compare
CA264_08320 +2.4 5.6 hypothetical protein compare
CA264_12455 +2.3 11.0 hypothetical protein compare
CA264_20855 +2.2 8.2 manganese catalase compare
CA264_11655 +2.1 1.7 hypothetical protein compare
CA264_06645 +2.1 7.8 hypothetical protein compare
CA264_05590 +2.1 5.3 hypothetical protein compare
CA264_03190 +2.0 7.2 hypothetical protein compare
CA264_11700 +2.0 6.8 hypothetical protein compare
CA264_04895 +1.9 7.3 peptidase M23 compare
CA264_04335 +1.9 4.4 restriction endonuclease subunit R compare
CA264_09240 +1.8 5.5 aldehyde dehydrogenase compare
CA264_19885 +1.8 7.4 uridine kinase compare
CA264_04325 +1.8 8.2 amidohydrolase compare
CA264_13470 +1.7 1.2 cysteine synthase A compare
CA264_01905 +1.6 6.8 cystathionine beta-synthase compare
CA264_18670 +1.6 6.3 cold-shock protein compare
CA264_17095 +1.5 4.5 FeoB-associated Cys-rich membrane protein compare
CA264_14320 +1.5 1.0 tRNA-specific adenosine deaminase compare
CA264_12450 +1.5 5.0 N-acetylneuraminate synthase compare
CA264_13340 +1.5 2.1 iron-sulfur cluster assembly accessory protein compare
CA264_05910 +1.4 2.1 RNA helicase compare
CA264_01425 +1.4 7.7 RelA/SpoT family protein compare
CA264_05190 +1.4 2.7 hypothetical protein compare
CA264_06355 +1.4 6.8 ergothioneine biosynthesis protein EgtB compare
CA264_12795 +1.4 3.4 hypothetical protein compare
CA264_07315 +1.3 2.8 DNA-binding response regulator compare
CA264_14455 +1.3 4.4 ribosome maturation factor compare
CA264_09665 +1.3 1.1 hypothetical protein compare
CA264_03995 +1.3 5.5 hypothetical protein compare
CA264_16685 +1.3 6.4 deoxyguanosinetriphosphate triphosphohydrolase compare
CA264_09955 +1.3 1.3 hypothetical protein compare
CA264_07490 +1.2 1.5 RNA-binding protein compare
CA264_03990 +1.2 5.8 alkyl hydroperoxide reductase compare
CA264_14115 +1.2 3.5 hydrolase compare
CA264_01605 +1.2 6.2 arginase compare
CA264_08530 +1.2 2.2 hypothetical protein compare
CA264_00905 +1.2 1.8 hypothetical protein compare
CA264_00085 +1.2 1.4 hypothetical protein compare
CA264_04350 +1.2 3.6 alanine dehydrogenase compare
CA264_08125 +1.2 4.6 tetratricopeptide repeat protein compare
CA264_15950 +1.2 4.3 hypothetical protein compare
CA264_01810 +1.2 2.9 hypothetical protein compare
CA264_02880 +1.2 1.9 hypothetical protein compare
CA264_10870 +1.2 1.8 division/cell wall cluster transcriptional repressor MraZ compare
CA264_13860 +1.1 3.0 hypothetical protein compare
CA264_05830 +1.1 1.0 hypothetical protein compare
CA264_10255 +1.1 1.6 hypothetical protein compare
CA264_02500 +1.1 1.7 hypothetical protein compare
CA264_08100 +1.1 3.0 ABC transporter ATP-binding protein compare
CA264_02635 +1.1 3.7 hypothetical protein compare
CA264_12790 +1.1 2.1 hypothetical protein compare
CA264_13015 +1.1 5.1 sensor histidine kinase compare
CA264_13000 +1.1 1.5 cupin compare
CA264_06160 +1.1 1.4 hypothetical protein compare
CA264_05630 +1.1 2.3 glycerol-3-phosphate dehydrogenase compare
CA264_12485 +1.1 2.5 two-component system response regulator compare
CA264_02575 +1.1 1.8 potassium transporter KefB compare
CA264_07280 +1.1 3.4 hypothetical protein compare
CA264_04345 +1.1 5.9 CAAX protease family protein compare
CA264_01985 +1.1 1.1 tRNA-Lys compare
CA264_14835 +1.1 8.0 hypothetical protein compare
CA264_14840 +1.1 8.8 hypothetical protein compare
CA264_05825 +1.1 3.2 isoaspartyl peptidase/L-asparaginase compare
CA264_19610 +1.0 1.3 hypothetical protein compare
CA264_05815 +1.0 2.8 hypothetical protein compare
CA264_06700 +1.0 2.6 hypothetical protein compare
CA264_06860 +1.0 1.9 cytochrome C compare
CA264_19090 +1.0 1.4 hypothetical protein compare
CA264_13130 +1.0 3.7 peptidase S1 compare
CA264_06395 +1.0 3.3 DUF58 domain-containing protein compare
CA264_12280 +1.0 1.9 hypothetical protein compare
CA264_20945 +1.0 2.2 hypothetical protein compare
CA264_19005 +1.0 6.6 SusC/RagA family TonB-linked outer membrane protein compare
CA264_04820 +1.0 4.1 deoxyhypusine synthase compare
CA264_01545 +1.0 1.9 3-deoxy-7-phosphoheptulonate synthase compare
CA264_15690 +1.0 3.0 hypothetical protein compare
CA264_12710 +1.0 2.7 SAM-dependent methyltransferase compare
CA264_15880 +1.0 1.3 5-formyltetrahydrofolate cyclo-ligase compare
CA264_19995 +1.0 1.8 hypothetical protein compare
CA264_08040 +1.0 1.4 dCTP deaminase compare
CA264_10305 +1.0 0.8 hypothetical protein compare
CA264_06420 +1.0 2.3 hypothetical protein compare
CA264_12070 +1.0 2.6 tRNA dimethylallyltransferase compare
CA264_04940 +1.0 0.6 hypothetical protein compare
CA264_20120 +1.0 1.0 hypothetical protein compare
CA264_08640 +0.9 1.3 hypothetical protein compare
CA264_00140 +0.9 5.3 hypothetical protein compare
CA264_09910 +0.9 2.5 hypothetical protein compare
CA264_10510 +0.9 3.3 (2Fe-2S)-binding protein compare
CA264_03330 +0.9 1.3 peptide-methionine (R)-S-oxide reductase compare
CA264_05680 +0.9 2.1 arylesterase compare
CA264_12910 +0.9 1.7 acyl-CoA-binding protein compare
CA264_12720 +0.9 2.5 hypothetical protein compare
CA264_09235 +0.9 3.5 short-chain dehydrogenase compare
CA264_01560 +0.9 1.9 hypothetical protein compare
CA264_04580 +0.9 4.5 hypothetical protein compare
CA264_01995 +0.9 3.7 SH3 domain-containing protein compare
CA264_02980 +0.9 3.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CA264_15340 +0.9 3.0 hypothetical protein compare
CA264_13605 +0.9 2.6 hypothetical protein compare
CA264_06795 +0.9 2.4 FeS assembly SUF system protein SufT compare
CA264_00060 +0.9 2.8 short-chain dehydrogenase compare
CA264_11715 +0.9 1.1 hypothetical protein compare
CA264_16680 +0.9 6.6 hypothetical protein compare
CA264_02875 +0.9 2.7 hypothetical protein compare
CA264_09190 +0.9 2.8 hypothetical protein compare
CA264_01555 +0.9 3.4 hypothetical protein compare
CA264_01065 +0.9 2.6 MarR family transcriptional regulator compare
CA264_04500 +0.9 2.2 bacitracin ABC transporter ATP-binding protein compare
CA264_04285 +0.9 1.2 hypothetical protein compare
CA264_03715 +0.9 2.8 DUF983 domain-containing protein compare
CA264_10690 +0.9 2.6 anti-anti-sigma factor compare
CA264_08090 +0.9 2.6 short-chain dehydrogenase compare
CA264_05595 +0.9 3.0 septum formation protein Maf compare
CA264_11800 +0.9 3.6 aerotolerance protein compare
CA264_05650 +0.9 2.8 tryptophan 2,3-dioxygenase compare
CA264_17885 +0.8 1.2 GAF domain-containing protein compare
CA264_02860 +0.8 1.4 hypothetical protein compare
CA264_12935 +0.8 2.1 serine hydrolase compare
CA264_08975 +0.8 3.0 hypothetical protein compare
CA264_00235 +0.8 2.7 hypothetical protein compare
CA264_02415 +0.8 1.7 dethiobiotin synthase compare
CA264_03390 +0.8 1.4 hypothetical protein compare
CA264_07275 +0.8 3.8 hypothetical protein compare
CA264_07000 +0.8 3.4 DUF4833 domain-containing protein compare
CA264_09620 +0.8 2.9 hypothetical protein compare
CA264_07495 +0.8 1.0 GTP-binding protein YchF compare
CA264_02160 +0.8 3.3 hypothetical protein compare
CA264_10285 +0.8 0.9 hypothetical protein compare
CA264_01970 +0.8 2.1 multidrug ABC transporter ATP-binding protein compare
CA264_04840 +0.8 4.5 hypothetical protein compare
CA264_08130 +0.8 1.1 antibiotic biosynthesis monooxygenase compare
CA264_08115 +0.8 3.1 electron transfer flavoprotein subunit alpha compare
CA264_14450 +0.8 3.4 endonuclease/exonuclease/phosphatase compare
CA264_07285 +0.8 4.9 alpha-amlyase compare
CA264_01890 +0.8 1.7 hypothetical protein compare
CA264_20040 +0.8 4.0 hypothetical protein compare
CA264_09815 +0.8 0.6 hypothetical protein compare
CA264_00340 +0.8 2.8 ZIP family zinc transporter compare
CA264_02900 +0.8 0.7 hypothetical protein compare
CA264_10050 +0.8 1.3 hypothetical protein compare
CA264_01945 +0.8 1.8 hypothetical protein compare
CA264_01395 +0.8 1.2 6-carboxytetrahydropterin synthase QueD compare
CA264_17785 +0.8 2.9 preprotein translocase subunit YajC compare
CA264_08590 +0.8 1.8 hypothetical protein compare
CA264_14935 +0.8 1.9 sec-independent protein translocase TatC compare
CA264_20285 +0.8 0.7 hypothetical protein compare
CA264_14925 +0.8 2.0 hypothetical protein compare
CA264_12085 +0.7 0.8 hypothetical protein compare
CA264_00045 +0.7 3.9 endopeptidase La compare
CA264_13880 +0.7 2.2 hypothetical protein compare
CA264_04795 +0.7 2.6 hypothetical protein compare
CA264_05880 +0.7 2.2 short-chain dehydrogenase compare
CA264_00130 +0.7 2.2 glyoxalase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Nalidixic acid sodium salt across organisms