Experiment set2IT082 for Escherichia coli BL21

Compare to:

NoPhageControl

200 most important genes:

  gene name fitness t score description  
ECD_03846 -7.1 -4.9 oxidative and nitrosative stress transcriptional regulator compare
ECD_03731 -6.2 -4.3 TatABCE protein translocation system subunit compare
ECD_00594 -6.1 -3.1 fluoride efflux channel, dual topology membrane protein compare
ECD_03687 -5.6 -2.8 site-specific tyrosine recombinase compare
ECD_00006 -5.4 -3.7 peroxide resistance protein, lowers intracellular iron compare
ECD_00423 -5.2 -3.6 gap repair protein compare
ECD_02889 -5.2 -3.6 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_02443 -4.9 -3.4 serine hydroxymethyltransferase compare
ECD_03509 -4.9 -8.1 ATP-dependent DNA helicase compare
ECD_03685 -4.8 -3.3 diaminopimelate epimerase compare
ECD_03583 -4.8 -14.4 gap repair protein compare
ECD_03067 -4.7 -2.3 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_02820 -4.7 -1.3 hypothetical protein compare
ECD_01409 -4.3 -2.1 ATP-binding protein, periplasmic, function unknown compare
ECD_03121 -4.2 -1.2 putative membrane protein compare
ECD_02331 -4.1 -3.6 porphyrinogen oxidase, cytoplasmic compare
ECD_01221 -4.1 -2.0 oligopeptide ABC transporter ATPase compare
ECD_04346 -4.0 -2.4 hypothetical protein compare
ECD_01814 -3.8 -1.9 C-N hydrolase family protein compare
ECD_00366 -3.8 -3.6 phosphatidylglycerophosphatase A compare
ECD_00682 -3.8 -2.9 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03818 -3.8 -3.2 essential cell division protein compare
ECD_03590 -3.8 -3.7 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_00575 -3.7 -4.4 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding compare
ECD_03132 -3.7 -2.6 dehydroshikimate reductase, NAD(P)-binding compare
ECD_02724 -3.6 -13.1 ssDNA exonuclease, 5 compare
ECD_02054 -3.6 -2.1 putative response regulator in two-component system withYehU compare
ECD_02250 -3.5 -1.0 uncharacterized protein compare
ECD_02114 -3.5 -3.4 putative ATP-dependent DNA or RNA helicase compare
ECD_02459 -3.4 -2.6 gap repair protein compare
ECD_01782 -3.4 -2.7 aminodeoxychorismate synthase, subunit I compare
ECD_04038 -3.4 -2.4 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00496 -3.4 -1.4 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_00574 -3.4 -4.9 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02039 -3.3 -0.9 hypothetical protein compare
ECD_01162 -3.3 -1.6 fatty acid metabolism regulon transcriptional regulator compare
ECD_02840 -3.3 -1.3 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_02130 -3.2 -1.3 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_03659 -3.2 -1.3 thioredoxin 1 compare
ECD_01584 -3.2 -2.4 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_03119 -3.2 -2.2 global DNA-binding transcriptional dual regulator compare
ECD_02726 -3.2 -4.3 site-specific tyrosine recombinase compare
ECD_00708 -3.1 -2.9 phosphoglyceromutase 1 compare
ECD_00450 -3.1 -1.3 conserved protein, rhs-like protein compare
ECD_00420 -3.1 -1.3 adenine phosphoribosyltransferase compare
ECD_01472 -3.1 -1.5 autoinducer 2 import system permease protein compare
ECD_03075 -3.1 -9.1 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02907 -3.0 -6.2 transport channel compare
ECD_01478 -3.0 -1.5 altronate oxidoreductase, NAD-dependent compare
ECD_01878 -3.0 -3.8 excinuclease UvrABC, endonuclease subunit compare
ECD_02765 -3.0 -5.3 transketolase 1, thiamine triphosphate-binding compare
ECD_00680 -3.0 -6.3 citrate synthase compare
ECD_03625 -2.9 -7.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_01118 -2.9 -2.0 deacetylase of acs and cheY, chemotaxis regulator compare
ECD_02549 -2.9 -8.4 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_00960 -2.8 -1.8 Ter macrodomain organizer matS-binding protein compare
ECD_00634 -2.8 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_01230 -2.8 -1.4 outer membrane protein W compare
ECD_01216 -2.8 -2.1 UPF0056 family inner membrane protein compare
ECD_02239 -2.8 -1.1 membrane-anchored periplasmic protein involved in septation compare
ECD_04018 -2.8 -1.4 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_01427 -2.7 -1.6 nitrate/nitrite transporter compare
ECD_02399 -2.7 -3.2 GMP synthetase (glutamine aminotransferase) compare
ECD_02108 -2.7 -3.0 microcin C ABC transporter permease compare
ECD_01577 -2.6 -1.1 response regulator of RstAB two-component system compare
ECD_04111 -2.6 -4.2 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_02400 -2.6 -4.8 IMP dehydrogenase compare
ECD_00858 -2.6 -1.5 negative regulator of motility; multicopy suppressor of coaA(Ts) compare
ECD_01735 -2.6 -1.9 protease IV (signal peptide peptidase) compare
ECD_00831 -2.6 -1.7 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_01964 -2.6 -1.5 putative acyl transferase compare
ECD_01593 -2.6 -1.3 putative oxidoreductase compare
ECD_02477 -2.6 -1.9 DTW domain protein compare
ECD_01691 -2.5 -1.6 acid-inducible putative outer membrane protein compare
ECD_02667 -2.5 -8.8 exonuclease V (RecBCD complex), alpha chain compare
ECD_02738 -2.5 -2.4 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_01667 -2.5 -1.5 putative electron transfer flavoprotein, FAD-binding subunit compare
ECD_03037 -2.5 -4.6 ribosome maturation factor for 30S subunits compare
ECD_01042 -2.5 -1.5 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit compare
ECD_01914 -2.5 -2.6 exodeoxyribonuclease I; exonuclease I compare
ECD_03816 -2.4 -3.9 molecular chaperone and ATPase component of HslUV protease compare
ECD_03729 -2.4 -1.7 TatABCE protein translocation system subunit compare
ECD_03920 -2.4 -2.2 uncharacterized protein compare
ECD_00165 -2.4 -4.3 uridylyltransferase compare
ECD_01441 -2.4 -1.2 D,D-dipeptide ABC transporter ATPase compare
ECD_01763 -2.4 -1.0 diguanylate cyclase compare
ECD_01565 -2.4 -1.0 putative arabinose efflux transporter compare
ECD_03238 -2.4 -4.1 D-ribulose-5-phosphate 3-epimerase compare
ECD_01067 -2.4 -1.0 anti-sigma factor for FliA (sigma 28) compare
ECD_00492 -2.3 -0.9 hypothetical protein compare
ECD_04119 -2.3 -0.9 SopA-central-domain-like hexapeptide repeat protein compare
ECD_01779 -2.3 -0.9 putative reactive intermediate deaminase compare
ECD_01795 -2.3 -1.8 putative inner membrane protein compare
ECD_00683 -2.3 -3.7 succinate dehydrogenase, flavoprotein subunit compare
ECD_03349 -2.2 -5.6 glutathione oxidoreductase compare
ECD_01775 -2.2 -1.5 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_00950 -2.2 -0.9 FtsZ stabilizer compare
ECD_03257 -2.2 -2.7 response regulator in two-component regulatory system with EnvZ compare
ECD_02076 -2.2 -0.9 dihydropyrimidine dehydrogenase, NADH-dependent, subunit C compare
ECD_04265 -2.2 -5.6 DNA repair protein compare
ECD_02169 -2.2 -3.9 anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster compare
ECD_01261 -2.2 -2.6 global regulator of transcription; DeoR family compare
ECD_01652 -2.2 -2.4 component of SufBCD complex compare
ECD_00487 -2.2 -1.4 Excisionase compare
ECD_01898 -2.1 -1.3 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_01445 -2.1 -1.6 D,D-dipeptide ABC transporter periplasmic binding protein compare
ECD_03785 -2.1 -1.7 putative enzyme IIA component of PTS compare
ECD_03817 -2.1 -2.5 peptidase component of the HslUV protease compare
ECD_02853 -2.1 -2.6 hypothetical protein compare
ECD_03929 -2.1 -2.4 DUF419 family protein compare
ECD_01649 -2.1 -1.4 cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent compare
ECD_02038 -2.1 -0.8 hypothetical protein compare
ECD_00459 -2.1 -1.6 tartronate semialdehyde reductase, NADH-dependent compare
ECD_01358 -2.1 -2.8 tyramine oxidase, copper-requiring compare
ECD_01030 -2.1 -1.3 glyoxylate/hydroxypyruvate reductase A compare
ECD_04048 -2.1 -1.5 DUF2170 family protein compare
ECD_00442 -2.0 -0.8 iron export ABC transporter permease; peroxide resistance protein compare
ECD_00053 -2.0 -3.6 diadenosine tetraphosphatase compare
ECD_00834 -2.0 -1.7 putative capsid scaffolding protein compare
ECD_02998 -2.0 -3.3 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02206 -2.0 -2.0 NADH:ubiquinone oxidoreductase, chain I compare
ECD_02710 -2.0 -2.1 CTP:molybdopterin cytidylyltransferase compare
ECD_01273 -1.9 -1.2 putrescine importer compare
ECD_04107 -1.9 -2.6 trehalose-6-P hydrolase compare
ECD_03256 -1.9 -5.5 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_04042 -1.9 -2.9 HflB protease modulator specific for phage lambda cII repressor compare
ECD_03353 -1.9 -2.0 hypothetical protein compare
ECD_00677 -1.9 -2.5 putative periplasmic pilin chaperone compare
ECD_00746 -1.9 -5.3 exision nuclease of nucleotide excision repair, DNA damage recognition component compare
ECD_02034 -1.9 -1.0 hypothetical protein compare
ECD_00813 -1.8 -1.1 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_04055 -1.8 -3.4 DUF1471 family periplasmic protein compare
ECD_01752 -1.8 -2.0 protein kinase, endogenous substrate unidentified; autokinase compare
ECD_02508 -1.8 -2.1 tmRNA-binding trans-translation protein compare
ECD_04049 -1.8 -1.1 PspA/IM30 family protein compare
ECD_00949 -1.8 -1.5 dihydro-orotate oxidase, FMN-linked compare
ECD_00432 -1.8 -1.0 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00393 -1.8 -1.1 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_01482 -1.8 -1.1 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_01953 -1.8 -1.9 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_02401 -1.7 -2.7 exonuclease VII, large subunit compare
ECD_03143 -1.7 -2.1 zntA gene transcriptional activator compare
ECD_02910 -1.7 -3.1 ATP-Grasp family ATPase compare
ECD_03086 -1.7 -3.2 sialic acid-inducible nan operon repressor compare
ECD_01755 -1.7 -1.2 putative diguanylate cyclase compare
ECD_04195 -1.7 -3.4 RpoS stabilzer after DNA damage, anti-RssB factor compare
ECD_01022 -1.7 -1.6 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_01055 -1.7 -2.0 N-methyltryptophan oxidase, FAD-binding compare
ECD_03005 -1.7 -2.1 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_03735 -1.7 -4.8 NAD(P)H-flavin reductase compare
ECD_01912 -1.7 -1.7 DNA gyrase inhibitor compare
ECD_02973 -1.7 -0.9 DUF805 family inner membrane protein compare
ECD_00533 -1.7 -1.5 copper/silver efflux system, outer membrane component compare
ECD_00690 -1.7 -3.7 fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component compare
ECD_02384 -1.7 -1.8 putative formate transporter compare
ECD_02051 -1.7 -3.2 hypothetical protein compare
ECD_02254 -1.7 -1.8 chorismate synthase compare
ECD_02548 -1.7 -2.0 regulatory protein for RecA compare
ECD_01290 -1.7 -1.4 putative Zn-dependent NAD(P)-binding oxidoreductase compare
ECD_01288 -1.6 -1.6 putative sugar ABC transporter permease compare
ECD_01982 -1.6 -2.4 putative citrate/iron-citrate/zinc-citrate efflux transporter compare
ECD_02365 -1.6 -1.5 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_01481 -1.6 -2.0 glutaminase 2 compare
ECD_01983 -1.6 -1.4 sensory histidine kinase in two-component regulatory system with BaeR compare
ECD_00904 -1.6 -0.9 LysR family putative transcriptional regulator compare
ECD_03498 -1.6 -5.1 nucleoid occlusion factor, anti-FtsZ division inhibitor compare
ECD_02607 -1.6 -1.2 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02123 -1.6 -3.7 heme lyase, CcmF subunit compare
ECD_01863 -1.6 -0.6 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_02186 -1.5 -3.1 inactive two-component system connector protein compare
ECD_03884 -1.5 -3.8 GNAT-family putative N-acetyltransferase; acetyl coenzyme A-binding protein compare
ECD_00651 -1.5 -0.9 response regulator in two-component regulatory system with KdpD compare
ECD_01080 -1.5 -2.9 endoribonuclease; RNA-binding protein compare
ECD_01732 -1.5 -2.5 DNA topoisomerase III compare
ECD_01317 -1.5 -1.7 DNA endonuclease compare
ECD_01235 -1.5 -1.8 tryptophan synthase, beta subunit compare
ECD_00923 -1.5 -1.6 protein kinase-like domain protein compare
ECD_01606 -1.5 -1.2 pyridoxamine kinase compare
ECD_00015 -1.5 -3.0 chaperone Hsp40, DnaK co-chaperone compare
ECD_03930 -1.5 -7.8 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC compare
ECD_01400 -1.5 -1.6 putative ABC transporter permease compare
ECD_01561 -1.5 -1.0 H(+)/Cl(-) exchange transporter compare
ECD_04041 -1.5 -2.0 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_00997 -1.5 -1.6 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_01773 -1.5 -0.9 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_00612 -1.5 -1.2 DUF1451 family protein compare
ECD_02387 -1.5 -1.3 putative oxidoreductase compare
ECD_00828 -1.4 -1.2 hypothetical protein compare
ECD_00380 -1.4 -0.8 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02101 -1.4 -1.9 elongation factor P-like protein compare
ECD_00322 -1.4 -0.8 putative transcriptional regulator compare
ECD_02529 -1.4 -1.6 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_00257 -1.4 -1.5 putative DNA-binding transcriptional regulator compare
ECD_00899 -1.4 -1.1 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_01657 -1.4 -1.7 UPF0118 family inner membrane protein compare
ECD_00940 -1.4 -0.7 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02618 -1.4 -1.2 putative SDR family oxidoreductase compare
ECD_01486 -1.4 -0.9 UPF0056 family inner membrane protein compare
ECD_00802 -1.4 -1.1 ribosomal protein S12 methylthiotransferase compare
ECD_02920 -1.4 -2.0 DUF1449 family inner membrane protein compare


Specific Phenotypes

For 3 genes in this experiment

For nophagecontrol NoPhageControl in Escherichia coli BL21

For nophagecontrol NoPhageControl across organisms