Experiment set2IT082 for Escherichia coli BL21
NoPhageControl
Group: nophagecontrolMedia: LB_agar + NoPhageControl + Kan (50 ug/ml)
Culturing: BL21_ML4, plate, Aerobic, at 37 (C), (Solid)
By: Vivek on 31-Jan-19
Specific Phenotypes
For 3 genes in this experiment
For nophagecontrol NoPhageControl in Escherichia coli BL21
For nophagecontrol NoPhageControl across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Auxin degradation | 1 |
| DNA repair, UvrABC system | 1 |
| Glycine Biosynthesis | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
| Threonine degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Methane metabolism
- Glycine, serine and threonine metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Phenylpropanoid biosynthesis
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| betanidin degradation | 1 | 1 | 1 |
| L-threonine degradation III (to methylglyoxal) | 3 | 3 | 2 |
| L-threonine degradation II | 2 | 2 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| aminopropanol phosphate biosynthesis II | 4 | 3 | 2 |
| baicalein degradation (hydrogen peroxide detoxification) | 2 | 1 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 2 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| luteolin triglucuronide degradation | 4 | 3 | 1 |
| xanthommatin biosynthesis | 4 | 1 | 1 |
| sesamin biosynthesis | 8 | 1 | 1 |
| superpathway of L-threonine metabolism | 18 | 16 | 2 |
| justicidin B biosynthesis | 10 | 1 | 1 |
| matairesinol biosynthesis | 10 | 1 | 1 |