Experiment set2IT082 for Agrobacterium fabrum C58

Compare to:

D-Leucrose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -7.0 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3343 -6.9 -9.4 trehalose utilization-like protein conserved
Atu1205 -6.5 -11.7 threonine dehydratase compare
Atu2264 -6.5 -13.2 2-isopropylmalate synthase compare
Atu2650 -6.5 -12.4 glycerol-3-phosphate dehydrogenase compare
Atu2289 -6.4 -17.5 anthranilate synthase component I and II compare
Atu2718 -6.3 -7.6 homoserine O-succinyltransferase compare
Atu0099 -6.3 -12.8 prephenate dehydratase compare
Atu2036 -6.3 -13.4 acetolactate synthase III, large subunit compare
Atu2791 -6.3 -8.6 3-isopropylmalate dehydrogenase compare
Atu0486 -6.2 -7.4 dihydroorotate dehydrogenase compare
Atu0537 -6.1 -4.2 histidinol dehydrogenase compare
Atu3706 -6.1 -8.4 D-3-phosphoglycerate dehydrogenase compare
Atu0432 -6.1 -10.2 O-succinylhomoserine sulfhydrylase compare
Atu3707 -6.0 -4.2 phosphoserine aminotransferase compare
Atu1688 -6.0 -4.1 indole-3-glycerol-phosphate synthase compare
Atu2709 -6.0 -19.8 3-isopropylmalate dehydratase, large subunit compare
Atu2726 -6.0 -24.6 pyruvate carboxylase compare
Atu3754 -5.9 -8.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1687 -5.9 -12.0 anthranilate phosphoribosyltransferase compare
Atu0678 -5.9 -4.1 histidyl-tRNA synthetase compare
Atu0679 -5.9 -7.0 ATP phosphoribosyltransferase compare
Atu1308 -5.9 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1075 -5.7 -7.8 amidophosphoribosyltransferase compare
Atu3755 -5.7 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3783 -5.7 -19.5 glutamate synthase subunit beta compare
Atu2040 -5.6 -6.6 phosphoserine phosphatase compare
Atu1850 -5.6 -6.6 phosphoribosylformylglycinamidine synthetase II compare
Atu1844 -5.6 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1750 -5.6 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1307 -5.5 -7.6 dihydroorotase compare
Atu3342 -5.5 -7.6 trehalose utilization-like protein compare
Atu0400 -5.5 -7.5 orotate phosphoribosyltransferase compare
Atu0038 -5.4 -5.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3885 -5.4 -9.6 inositol monophosphatase compare
Atu1845 -5.3 -4.0 phosphoribosylformylglycinamidine synthase I compare
Atu3339 -5.3 -13.6 trehalose/maltose ABC transporter permease conserved
Atu0399 -5.2 -7.1 dihydroorotase compare
Atu0298 -5.2 -8.6 orotidine 5 compare
Atu0043 -5.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3340 -5.0 -11.9 trehalose/maltose ABC transporter permease conserved
Atu2747 -5.0 -15.7 hypothetical protein compare
Atu0017 -5.0 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu1359 -4.8 -2.0 dnaK deletion suppressor protein compare
Atu3784 -4.8 -25.0 glutamate synthase large subunit compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3739 -4.7 -3.8 phosphoglycerate kinase compare
Atu1588 -4.7 -10.6 homoserine dehydrogenase compare
Atu1141 -4.6 -6.9 Phosphoribosylglycinamide synthetase compare
Atu2015 -4.5 -15.5 aminotransferase compare
Atu2790 -4.3 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu3482 -4.3 -9.1 pantoate--beta-alanine ligase compare
Atu3469 -4.2 -4.0 phosphoglyceromutase compare
Atu3483 -4.1 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3338 -4.1 -15.9 trehalose/maltose ABC transporter substrate-binding protein conserved
Atu3341 -3.9 -9.7 trehalose/maltose ABC transporter ATPase conserved
Atu0030 -3.7 -2.6 phosphocarrier protein HPr compare
Atu0647 -3.6 -8.0 phosphoribosylamine--glycine ligase compare
Atu0401 -3.6 -6.6 fructokinase compare
Atu1030 -3.6 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1456 -3.5 -13.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1589 -3.4 -10.8 aminotransferase, class I compare
Atu1686 -3.1 -14.2 peptidyl-prolyl cis-trans isomerse D compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0598 -2.7 -10.0 phosphogluconate dehydratase compare
Atu0641 -2.7 -5.2 hypothetical protein compare
Atu2548 -2.7 -16.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1454 -2.7 -6.0 siroheme synthase compare
Atu0723 -2.6 -2.4 FAD dependent oxidoreductase compare
Atu0792 -2.6 -6.4 hypothetical protein compare
Atu4098 -2.5 -15.6 quinolinate synthetase compare
Atu3731 -2.4 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu4096 -2.4 -9.4 nicotinate-nucleotide pyrophosphorylase compare
Atu2155 -2.3 -16.7 methionine synthase compare
Atu4773 -2.2 -2.7 two component response regulator compare
Atu1446 -2.1 -3.7 two component response regulator compare
Atu2200 -2.0 -3.4 cold shock protein compare
Atu0184 -2.0 -4.4 glucokinase compare
Atu0346 -1.9 -4.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0769 -1.8 -2.8 protoheme IX farnesyltransferase compare
Atu2532 -1.8 -4.9 transcriptional regulator, MarR family compare
Atu0029 -1.8 -7.5 S-adenosylhomocysteine hydrolase compare
Atu2125 -1.8 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3908 -1.7 -9.7 GntR family transcriptional regulator compare
Atu3997 -1.7 -11.5 biotin synthetase compare
Atu1455 -1.7 -2.9 hypothetical protein compare
Atu4711 -1.7 -6.8 two component sensor kinase compare
Atu1462 -1.6 -10.9 glycine cleavage system protein P2 compare
Atu4097 -1.6 -7.0 L-aspartate oxidase compare
Atu1620 -1.6 -8.5 triosephosphate isomerase compare
Atu0591 -1.5 -10.0 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu1904 -1.5 -3.9 transcriptional regulator compare
Atu1464 -1.5 -5.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu4514 -1.4 -4.2 RpiR family transcriptional regulator compare
Atu3290 -1.4 -6.1 phosphomethylpyrimidine kinase compare
Atu4685 -1.4 -8.4 LacI family transcriptional regulator compare
Atu3910 -1.4 -4.8 LamB/YcsF family protein compare
Atu0595 -1.3 -8.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -1.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4446 -1.3 -8.4 hypothetical protein compare
Atu3289 -1.3 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu0593 -1.3 -6.6 ABC transporter, membrane spanning protein compare
Atu1463 -1.3 -3.6 glycine cleavage system component H compare
Atu2569 -1.3 -9.8 thiamine biosynthesis protein compare
Atu3162 -1.3 -6.8 LacI family transcriptional regulator compare
Atu2020 -1.2 -2.9 transcriptional regulator, TetR family compare
Atu3288 -1.2 -5.1 hydroxyethylthiazole kinase compare
Atu2205 -1.2 -4.2 transcriptional regulator, MarR family compare
Atu0592 -1.2 -4.7 ABC transporter, membrane spanning protein compare
Atu3913 -1.1 -5.8 biotin carboxylase compare
Atu4317 -1.1 -3.9 TetR family transcriptional regulator compare
Atu3878 -1.1 -6.4 transcriptional regulator compare
Atu6114 -1.1 -1.6 hypothetical protein compare
Atu1062 -1.1 -1.9 phosphatidylserine synthase compare
Atu3349 -1.1 -4.3 ABC transporter permease compare
Atu3912 -1.1 -6.7 hypothetical protein compare
Atu0189 -1.1 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0031 -1.1 -1.5 PTS system, IIA component compare
Atu4000 -1.1 -7.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0784 -1.1 -2.6 hypothetical protein compare
Atu3240 -1.1 -6.1 ROK family transcriptional regulator compare
Atu0421 -1.0 -1.6 ABC transporter, membrane spanning protein compare
Atu4576 -1.0 -5.6 ROK family transcriptional regulator compare
Atu2633 -1.0 -1.6 RhtB family transporter compare
Atu0977 -1.0 -3.1 serine protease DO-like protease compare
Atu3183 -1.0 -1.1 hypothetical protein compare
Atu1604 -1.0 -6.6 poly-beta-hydroxybutyrate synthase compare
Atu0786 -1.0 -4.2 peptidase, family M16 compare
Atu1457 -1.0 -1.3 hypothetical protein compare
Atu0331 -1.0 -1.6 sigma-54 modulation protein compare
Atu8115 -1.0 -3.4 Hypothetical Protein compare
Atu0062 -0.9 -5.1 transcriptional regulator, ROK family compare
Atu3998 -0.9 -6.8 8-amino-7-oxononanoate synthase compare
Atu0422 -0.9 -1.2 ABC transporter, membrane spanning protein compare
Atu6098 -0.9 -0.7 transcriptional regulator, HTH family compare
Atu3351 -0.9 -5.5 sugar ABC transporter permease compare
Atu0876 -0.9 -2.0 superoxide dismutase compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu3352 -0.9 -6.8 sugar ABC transporter substrate-binding protein compare
Atu4346 -0.9 -3.5 hypothetical protein compare
Atu4161 -0.9 -2.1 hypothetical protein compare
Atu5475 -0.9 -1.8 hypothetical protein compare
Atu4451 -0.9 -5.5 mannitol 2-dehydrogenase compare
Atu2821 -0.8 -2.9 transcriptional regulator, GntR family compare
Atu3598 -0.8 -1.9 thiol:disulfide interchange protein compare
Atu0419 -0.8 -1.6 two component sensor kinase compare
Atu1570 -0.8 -0.8 hypothetical protein compare
Atu3350 -0.8 -5.4 ABC transporter permease compare
Atu4472 -0.8 -1.8 hypothetical protein compare
Atu1748 -0.8 -4.8 NIFU-like protein compare
Atu2209 -0.8 -2.1 pyrroline-5-carboxylate reductase compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu2801 -0.8 -3.1 precorrin-2 C20 methyltransferase compare
Atu0322 -0.8 -4.1 enoyl CoA hydratase compare
Atu4072 -0.8 -1.6 nodulation protein N compare
Atu3794 -0.8 -4.3 FadR family transcriptional regulator compare
Atu4075 -0.8 -3.9 glycogen synthase compare
Atu1542 -0.7 -3.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu6009 -0.7 -3.0 indole-3-lactate synthase compare
Atu5045 -0.7 -1.0 hypothetical protein compare
Atu5057 -0.7 -1.4 hypothetical protein compare
Atu0188 -0.7 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2803 -0.7 -2.7 Cobalamin biosynthesis associated protein compare
Atu0101 -0.7 -3.9 cytochrome c compare
Atu2063 -0.7 -1.8 hypothetical protein compare
Atu2800 -0.7 -2.8 precorrin-3B C17-methyltransferase compare
Atu2831 -0.7 -3.6 glucose inhibited division protein A compare
Atu8052 -0.7 -1.1 hypothetical protein compare
Atu3999 -0.7 -2.3 dithiobiotin synthetase compare
Atu3144 -0.7 -3.4 GntR family transcriptional regulator compare
Atu1285 -0.7 -3.7 metal dependent hydrolase compare
Atu0687 -0.7 -1.4 hypothetical protein compare
Atu5464 -0.7 -4.1 IclR family transcriptional regulator compare
Atu1810 -0.7 -1.1 hypothetical protein compare
Atu3226 -0.7 -3.6 GntR family transcriptional regulator compare
Atu3759 -0.7 -1.2 hypothetical protein compare
Atu0319 -0.7 -1.0 ubiquinone biosynthesis protein compare
Atu4232 -0.7 -2.5 GntR family transcriptional regulator compare
Atu5160 -0.7 -1.2 transcriptional regulator protein compare
Atu0361 -0.7 -1.6 transcriptional regulator compare
Atu1774 -0.7 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu3122 -0.7 -2.2 cold shock protein compare
Atu1339 -0.7 -2.5 ribonuclease E compare
Atu8162 -0.7 -0.8 hypothetical protein compare
Atu1074 -0.6 -3.8 NAD/NADP dependent oxidoreductase compare
Atu4187 -0.6 -1.2 tRNA-Met compare
Atu4029 -0.6 -3.6 gluconolactonase compare
Atu5511 -0.6 -1.7 hypothetical protein compare
Atu5125 -0.6 -2.1 GntR family transcriptional regulator compare
Atu2795 -0.6 -2.1 cobalamin biosynthetic protein compare
Atu6165 -0.6 -0.7 hypothetical protein compare
Atu3712 -0.6 -0.8 hypothetical protein compare
Atu5075 -0.6 -2.7 GntR family transcriptional regulator compare
Atu2271 -0.6 -1.3 urease accessory protein compare
Atu0677 -0.6 -1.0 hypothetical protein compare
Atu0357 -0.6 -3.5 phosphate starvation inducible protein compare
Atu4616 -0.6 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu4001 -0.6 -3.3 3-oxoacyl-ACP synthase compare
Atu3115 -0.6 -4.3 TetR family transcriptional regulator compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Leucrose in Agrobacterium fabrum C58

For carbon source D-Leucrose across organisms