Experiment set2IT081 for Pseudomonas simiae WCS417

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18560 -6.8 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -6.6 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_17565 -6.4 -4.4 branched-chain amino acid aminotransferase compare
PS417_25720 -6.3 -7.5 anthranilate synthase component II compare
PS417_01570 -6.3 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01575 -6.3 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -5.7 -3.8 3-phosphoglycerate dehydrogenase compare
PS417_01855 -5.6 -3.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -5.5 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17550 -5.3 -5.2 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) conserved
PS417_01565 -5.3 -4.1 imidazole glycerol phosphate synthase compare
PS417_25725 -5.2 -12.6 anthranilate synthase component I compare
PS417_23805 -5.2 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -5.1 -3.5 tryptophan synthase subunit beta compare
PS417_12855 -5.1 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20125 -5.0 -4.9 phosphoribosylglycinamide formyltransferase compare
PS417_23800 -5.0 -7.7 ketol-acid reductoisomerase compare
PS417_23810 -4.9 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_04220 -4.7 -2.2 4-carboxymuconolactone decarboxylase compare
PS417_01850 -4.7 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16570 -4.6 -7.7 isocitrate lyase compare
PS417_17545 -4.6 -4.4 2-oxoisovalerate dehydrogenase compare
PS417_04420 -4.6 -9.8 histidinol dehydrogenase compare
PS417_07640 -4.5 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20160 -4.4 -6.3 cysteine synthase compare
PS417_23545 -4.4 -3.0 gamma-glutamyl kinase compare
PS417_24745 -4.4 -4.3 gamma-glutamyl phosphate reductase compare
PS417_12290 -4.2 -7.5 sulfite reductase compare
PS417_18530 -4.1 -6.8 O-succinylhomoserine sulfhydrylase compare
PS417_24765 -4.1 -4.9 membrane protein compare
PS417_16465 -4.1 -9.5 sirohydrochlorin ferrochelatase compare
PS417_22570 -4.1 -1.9 H-NS histone compare
PS417_27795 -4.1 -1.9 orotate phosphoribosyltransferase compare
PS417_05595 -4.0 -9.7 ornithine carbamoyltransferase compare
PS417_02415 -4.0 -6.0 phosphoserine phosphatase compare
PS417_26740 -4.0 -9.5 homoserine acetyltransferase compare
PS417_25715 -3.9 -5.3 anthranilate phosphoribosyltransferase compare
PS417_26040 -3.9 -3.8 malate synthase compare
PS417_27435 -3.6 -6.9 polyphosphate kinase compare
PS417_01560 -3.6 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_24100 -3.4 -7.3 transcriptional regulator PdhR compare
PS417_26890 -3.3 -6.4 dihydroxy-acid dehydratase compare
PS417_25710 -3.3 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_27195 -3.2 -1.9 N-acetylglutamate synthase compare
PS417_23725 -3.2 -4.3 methylmalonate-semialdehyde dehydrogenase compare
PS417_17015 -3.1 -5.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) conserved
PS417_27875 -3.1 -9.2 histidine kinase compare
PS417_26745 -3.1 -5.1 methionine biosynthesis protein MetW compare
PS417_24155 -3.1 -3.0 ATP-binding protein compare
PS417_23995 -3.0 -1.4 preprotein translocase subunit SecG compare
PS417_01580 -2.9 -1.6 imidazole glycerol phosphate synthase compare
PS417_26995 -2.8 -7.3 phosphoserine phosphatase compare
PS417_20985 -2.8 -3.8 porin compare
PS417_26005 -2.8 -8.2 biotin synthase compare
PS417_08245 -2.8 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21750 -2.7 -16.0 acetyl-CoA synthetase compare
PS417_26730 -2.6 -1.7 pyrroline-5-carboxylate reductase compare
PS417_20635 -2.5 -1.6 ABC transporter ATP-binding protein compare
PS417_23770 -2.4 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_08125 -2.2 -1.4 prephenate dehydratase compare
PS417_17560 -2.2 -2.6 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) conserved
PS417_21000 -2.1 -2.7 CrfX protein compare
PS417_05165 -2.0 -3.5 cytosol aminopeptidase compare
PS417_14980 -2.0 -1.7 universal stress protein UspA compare
PS417_00180 -2.0 -2.7 tryptophan synthase subunit alpha compare
PS417_01950 -1.9 -4.7 malate dehydrogenase compare
PS417_01710 -1.9 -5.4 histidine utilization repressor compare
PS417_16990 -1.9 -5.6 acyl-CoA dehydrogenase compare
PS417_27035 -1.8 -5.6 FAD-linked oxidase compare
PS417_24615 -1.8 -1.6 hypothetical protein compare
PS417_26985 -1.8 -3.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26990 -1.8 -1.9 RNA pyrophosphohydrolase compare
PS417_08130 -1.7 -2.5 aspartate aminotransferase compare
PS417_06245 -1.7 -2.3 zinc metallopeptidase RseP compare
PS417_00550 -1.7 -1.3 hypothetical protein compare
PS417_22520 -1.7 -1.8 histidine kinase compare
PS417_08225 -1.7 -4.1 acetolactate synthase compare
PS417_21010 -1.7 -4.6 ribonuclease activity regulator protein RraA compare
PS417_16555 -1.7 -2.2 cupin compare
PS417_23315 -1.6 -1.5 transcriptional regulator compare
PS417_03730 -1.6 -4.4 phosphate acetyltransferase conserved
PS417_06445 -1.6 -2.3 iron-siderophore ABC transporter permease compare
PS417_02720 -1.6 -1.2 TetR family transcriptional regulator compare
PS417_19600 -1.6 -1.5 exonuclease compare
PS417_24370 -1.5 -1.1 (2Fe-2S)-binding protein compare
PS417_18690 -1.5 -3.6 aromatic amino acid aminotransferase compare
PS417_01210 -1.5 -6.8 hypothetical protein compare
PS417_08200 -1.5 -3.2 hypothetical protein compare
PS417_27315 -1.5 -1.3 hypothetical protein compare
PS417_08205 -1.5 -3.5 acetyltransferase compare
PS417_13055 -1.4 -2.7 aminotransferase compare
PS417_14655 -1.4 -1.5 lysine transporter LysE compare
PS417_17420 -1.4 -4.2 ethanol oxidation regulatory protein ercA (from data) compare
PS417_07620 -1.4 -2.0 beta-hexosaminidase compare
PS417_15935 -1.4 -1.9 Rrf2 family transcriptional regulator compare
PS417_19425 -1.4 -1.2 allantoicase compare
PS417_25895 -1.4 -2.2 glyoxalase compare
PS417_06635 -1.4 -1.3 ferredoxin compare
PS417_03495 -1.3 -2.5 type III secretory protein EscS compare
PS417_24835 -1.3 -3.9 hypothetical protein compare
PS417_06100 -1.3 -1.7 SAM-dependent methyltransferase compare
PS417_08230 -1.3 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08580 -1.3 -3.7 histidine kinase compare
PS417_21125 -1.3 -6.2 phosphoadenosine phosphosulfate reductase compare
PS417_20610 -1.3 -1.5 hypothetical protein compare
PS417_02160 -1.3 -1.3 hypothetical protein compare
PS417_03925 -1.3 -3.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_15750 -1.3 -1.9 protease compare
PS417_15875 -1.3 -1.9 LuxR family transcriptional regulator compare
PS417_17415 -1.3 -3.9 histidine kinase compare
PS417_03465 -1.3 -1.2 type III secretion protein compare
PS417_16510 -1.2 -3.0 Clp protease ClpX compare
PS417_01605 -1.2 -1.0 phosphoglycerate mutase compare
PS417_22115 -1.2 -2.9 transcriptional regulator compare
PS417_21705 -1.2 -3.7 arginine N-succinyltransferase compare
PS417_00385 -1.2 -1.0 Fur family transcriptional regulator compare
PS417_09915 -1.2 -1.7 hypothetical protein compare
PS417_06375 -1.2 -1.0 deoxycytidine triphosphate deaminase compare
PS417_19945 -1.2 -2.4 MarR family transcriptional regulator compare
PS417_06615 -1.2 -4.1 ABC transporter for branched-chain amino acids, substrate-binding component (from data) compare
PS417_06605 -1.1 -4.3 leucine/isoleucine/valine transporter permease subunit compare
PS417_26770 -1.1 -2.3 tRNA (guanine-N7)-methyltransferase compare
PS417_25920 -1.1 -5.2 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_17070 -1.1 -1.6 RNA polymerase subunit sigma-24 compare
PS417_18235 -1.1 -2.0 nitrile hydratase compare
PS417_12255 -1.1 -3.9 hypothetical protein compare
PS417_17855 -1.1 -3.3 major facilitator transporter compare
PS417_05365 -1.1 -1.5 FAD-binding protein compare
PS417_05570 -1.1 -2.9 DeoR faimly transcriptional regulator compare
PS417_25790 -1.1 -2.8 aminoglycoside phosphotransferase compare
PS417_25225 -1.1 -1.9 MFS transporter compare
PS417_02485 -1.0 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_25940 -1.0 -4.4 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_16715 -1.0 -1.3 DoxX family protein compare
PS417_22840 -1.0 -0.7 tRNA-Met compare
PS417_01095 -1.0 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_02670 -1.0 -2.3 ABC transporter compare
PS417_06600 -1.0 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_08195 -1.0 -4.3 hypothetical protein compare
PS417_15780 -1.0 -2.3 membrane protein compare
PS417_27835 -1.0 -3.6 endoribonuclease compare
PS417_15705 -1.0 -1.9 nitrate reductase compare
PS417_25985 -1.0 -1.6 dethiobiotin synthetase compare
PS417_14530 -1.0 -2.3 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_21070 -1.0 -1.8 aconitate hydratase compare
PS417_24935 -1.0 -0.8 hypothetical protein compare
PS417_21510 -1.0 -0.9 histidine kinase compare
PS417_04270 -1.0 -4.6 ribonuclease G compare
PS417_18445 -1.0 -0.8 glycerol-3-phosphatase compare
PS417_13075 -1.0 -1.4 hypothetical protein compare
PS417_10985 -1.0 -0.8 NADH:flavin oxidoreductase compare
PS417_09470 -1.0 -1.1 hypothetical protein compare
PS417_10095 -1.0 -1.6 hypothetical protein compare
PS417_03310 -1.0 -3.7 carbonate dehydratase compare
PS417_13490 -1.0 -1.5 hypothetical protein compare
PS417_02660 -1.0 -5.8 branched-chain amino acid transporter permease subunit LivH compare
PS417_10520 -1.0 -2.7 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_16720 -1.0 -0.9 membrane protein compare
PS417_17120 -1.0 -2.5 protein kinase compare
PS417_23775 -1.0 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_22385 -0.9 -5.1 quinolinate synthase A compare
PS417_20915 -0.9 -2.0 hypothetical protein compare
PS417_02255 -0.9 -1.4 lipopolysaccharide kinase compare
PS417_01915 -0.9 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27155 -0.9 -1.4 aliphatic sulfonates transport ATP-binding subunit compare
PS417_23475 -0.9 -1.2 hypothetical protein compare
PS417_07010 -0.9 -2.3 pseudouridine synthase compare
PS417_01620 -0.9 -1.3 preprotein translocase subunit SecB compare
PS417_11845 -0.9 -2.3 RpiR family transcriptional regulator compare
PS417_09545 -0.9 -1.5 aldehyde-activating protein compare
PS417_16775 -0.9 -1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_05830 -0.9 -2.7 hypothetical protein compare
PS417_06680 -0.9 -5.5 nuclease PIN compare
PS417_00295 -0.9 -2.9 hypothetical protein compare
PS417_22450 -0.9 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_20720 -0.9 -1.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_22535 -0.9 -3.4 ornithine acetyltransferase compare
PS417_28070 -0.9 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_22780 -0.9 -2.4 XRE family transcriptional regulator compare
PS417_00825 -0.9 -1.8 recombinase RecF compare
PS417_22300 -0.9 -1.2 LTXXQ domain protein compare
PS417_28325 -0.9 -1.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_17485 -0.9 -3.2 membrane protein compare
PS417_06200 -0.9 -3.0 protein-PII uridylyltransferase compare
PS417_02665 -0.9 -5.0 branched-chain amino acid ABC transporter permease compare
PS417_00195 -0.9 -1.0 hypothetical protein compare
PS417_17705 -0.9 -2.1 LacI family transcriptional regulator compare
PS417_04530 -0.9 -2.0 glycerate dehydrogenase compare
PS417_19965 -0.8 -5.8 histidine kinase compare
PS417_16005 -0.8 -1.3 ATPase compare
PS417_22815 -0.8 -3.8 permease compare
PS417_26645 -0.8 -1.9 chemotaxis protein compare
PS417_26540 -0.8 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_11865 -0.8 -2.0 xylose isomerase compare
PS417_28510 -0.8 -3.2 chromosome partitioning protein compare
PS417_17945 -0.8 -0.8 hypothetical protein compare
PS417_17490 -0.8 -1.6 ABC transporter ATP-binding protein compare
PS417_08540 -0.8 -2.1 RNA helicase compare
PS417_10535 -0.8 -3.0 hypothetical protein compare
PS417_19305 -0.8 -2.4 acireductone dioxygenase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Leucine in Pseudomonas simiae WCS417

For carbon source L-Leucine across organisms