| | gene | name | fitness | t score | description | |
|---|
| b3261 | fis | +2.3 | 8.5 | DNA-binding protein Fis (NCBI) | compare |
| b2904 | gcvH | +2.3 | 6.1 | glycine cleavage system protein H (NCBI) | compare |
| b4171 | miaA | +2.1 | 12.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2808 | gcvA | +2.1 | 11.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0889 | lrp | +2.0 | 6.3 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2903 | gcvP | +1.8 | 14.3 | glycine dehydrogenase (NCBI) | compare |
| b0059 | hepA | +1.8 | 15.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b3181 | greA | +1.8 | 7.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1865 | nudB | +1.7 | 2.1 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2905 | gcvT | +1.7 | 8.7 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2830 | nudH | +1.5 | 3.5 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1148 | ymfM | +1.4 | 2.7 | e14 prophage; predicted protein (NCBI) | compare |
| b4260 | pepA | +1.4 | 10.4 | leucyl aminopeptidase (NCBI) | compare |
| b2951 | yggS | +1.3 | 5.1 | predicted enzyme (NCBI) | compare |
| b4443 | gcvB | +1.2 | 1.7 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b3260 | dusB | +1.2 | 4.8 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1824 | yobF | +1.1 | 2.5 | hypothetical protein (NCBI) | compare |
| b3500 | gor | +1.0 | 1.8 | glutathione reductase (NCBI) | compare |
| b2895 | fldB | +1.0 | 2.3 | flavodoxin 2 (NCBI) | compare |
| b3412 | bioH | +1.0 | 6.0 | carboxylesterase of pimeloyl-CoA synthesis (NCBI) | compare |
| b3341 | rpsG | +1.0 | 1.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b1248 | b1248 | +1.0 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4504 | ykfH | +0.9 | 2.6 | hypothetical protein (NCBI) | compare |
| b1263 | trpD | +0.9 | 1.9 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b1671 | ydhX | +0.9 | 1.7 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b0210 | yafE | +0.9 | 2.7 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b0967 | yccW | +0.9 | 3.8 | predicted methyltransferase (RefSeq) | compare |
| b1793 | yoaF | +0.9 | 2.0 | conserved outer membrane protein (NCBI) | compare |
| b3764 | yifE | +0.9 | 4.1 | hypothetical protein (NCBI) | compare |
| b4411 | ecnB | +0.9 | 2.5 | entericidin B membrane lipoprotein (NCBI) | compare |
| b2576 | srmB | +0.8 | 2.9 | ATP-dependent RNA helicase (NCBI) | compare |
| b2915 | yqfE | +0.8 | 2.3 | hypothetical protein (RefSeq) | compare |
| b1524 | yneH | +0.8 | 1.0 | predicted glutaminase (NCBI) | compare |
| b1511 | ydeV | +0.8 | 3.1 | putative kinase (VIMSS) | compare |
| b1639 | ydhA | +0.8 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | +0.8 | 1.3 | hypothetical protein (NCBI) | compare |
| b3391 | hofQ | +0.8 | 6.0 | predicted fimbrial transporter (NCBI) | compare |
| b3206 | npr | +0.8 | 3.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4203 | rplI | +0.7 | 2.0 | 50S ribosomal protein L9 (NCBI) | compare |
| b2476 | purC | +0.7 | 2.1 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b4371 | rsmC | +0.7 | 4.0 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b0964 | yccT | +0.7 | 2.4 | hypothetical protein (NCBI) | compare |
| b1134 | ymfB | +0.7 | 1.2 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b3281 | aroE | +0.7 | 5.8 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b4545 | ypdJ | +0.7 | 2.0 | no description | compare |
| b1693 | aroD | +0.7 | 3.4 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b3973 | birA | +0.7 | 1.3 | biotin--protein ligase (NCBI) | compare |
| b2093 | gatB | +0.7 | 2.1 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1427 | rimL | +0.7 | 1.1 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b0556 | rzpD | +0.7 | 1.4 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b2618 | b2618 | +0.7 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2012 | yeeD | +0.7 | 1.4 | hypothetical protein (NCBI) | compare |
| b1812 | pabB | +0.7 | 2.3 | para-aminobenzoate synthase component I (NCBI) | compare |
| b1757 | b1757 | +0.7 | 2.3 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b0712 | ybgK | +0.7 | 2.9 | predicted enzyme subunit (NCBI) | compare |
| b1685 | ydiH | +0.7 | 1.0 | predicted protein (RefSeq) | compare |
| b2217 | rcsB | +0.7 | 3.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2829 | ptsP | +0.7 | 5.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2198 | ccmD | +0.7 | 1.5 | cytochrome c biogenesis protein (NCBI) | compare |
| b3129 | sohA | +0.6 | 1.7 | predicted regulator (NCBI) | compare |
| b1302 | puuE | +0.6 | 1.9 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b1566 | flxA | +0.6 | 2.0 | Qin prophage; predicted protein (NCBI) | compare |
| b4578 | insP | +0.6 | 0.9 | no description | compare |
| b1814 | sdaA | +0.6 | 2.0 | L-serine deaminase I (NCBI) | compare |
| b4413 | sokC | +0.6 | 1.1 | regulatory antisense RNA (NCBI) | compare |
| b1999 | yeeP | +0.6 | 2.2 | putative histone (VIMSS) | compare |
| b1684 | sufA | +0.6 | 0.8 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b4000 | hupA | +0.6 | 2.4 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0707 | ybgA | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b1704 | aroH | +0.6 | 2.5 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI) | compare |
| b4176 | yjeT | +0.6 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b2506 | yfgI | +0.6 | 1.4 | hypothetical protein (NCBI) | compare |
| b3860 | dsbA | +0.6 | 4.1 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1846 | yebE | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0238 | gpt | +0.6 | 1.9 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b0627 | tatE | +0.6 | 0.8 | twin arginine translocase protein E (NCBI) | compare |
| b1539 | ydfG | +0.6 | 1.6 | L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b4195 | ulaC | +0.6 | 1.9 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b1183 | umuD | +0.6 | 0.8 | DNA polymerase V, subunit D (NCBI) | compare |
| b2024 | hisA | +0.6 | 0.7 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b4505 | insX | +0.6 | 0.8 | predicted IS protein (RefSeq) | compare |
| b1843 | yobB | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b1955 | yedP | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b4515 | ybgT | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b2176 | rtn | +0.6 | 3.7 | hypothetical protein (NCBI) | compare |
| b1007 | b1007 | +0.6 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1871 | yecP | +0.6 | 2.0 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3977 | tyrU | +0.6 | 0.8 | tRNA-Tyr (NCBI) | compare |
| b1804 | rnd | +0.6 | 1.8 | ribonuclease D (NCBI) | compare |
| b1392 | paaE | +0.6 | 1.7 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1234 | rssA | +0.6 | 2.4 | conserved protein (RefSeq) | compare |
| b4063 | soxR | +0.6 | 2.1 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b4593 | ymgI | +0.6 | 1.5 | hypothetical protein (RefSeq) | compare |
| b4558 | yifL | +0.6 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b4375 | prfC | +0.6 | 3.2 | peptide chain release factor 3 (NCBI) | compare |
| b2906 | visC | +0.6 | 2.9 | hypothetical protein (NCBI) | compare |
| b0881 | clpS | +0.6 | 1.2 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b4653 | yicT | +0.5 | 1.2 | no description | compare |
| b1296 | ycjJ | +0.5 | 1.3 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1428 | ydcK | +0.5 | 2.1 | predicted enzyme (NCBI) | compare |
| b1412 | azoR | +0.5 | 0.9 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b1672 | ydhW | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2597 | yfiA | +0.5 | 1.1 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1251 | yciI | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4445 | omrB | +0.5 | 1.6 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b2646 | ypjF | +0.5 | 1.3 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b0822 | ybiV | +0.5 | 1.7 | predicted hydrolase (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1485 | ddpC | +0.5 | 1.7 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b2426 | ucpA | +0.5 | 1.0 | putative oxidoreductase (VIMSS) | compare |
| b1290 | sapF | +0.5 | 1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2189 | proL | +0.5 | 1.1 | tRNA-Pro (NCBI) | compare |
| b4234 | yjgA | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.5 | predicted oxidoreductase (NCBI) | compare |
| b4373 | rimI | +0.5 | 1.2 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4561 | insM | +0.5 | 1.8 | transposase (RefSeq) | compare |
| b1448 | yncA | +0.5 | 0.9 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4066 | yjcF | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b2329 | aroC | +0.5 | 2.2 | chorismate synthase (NCBI) | compare |
| b2811 | ygdK | +0.5 | 1.6 | predicted Fe-S metabolism protein (NCBI) | compare |
| b2291 | yfbR | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b0630 | lipB | +0.5 | 1.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2214 | yojL | +0.5 | 2.1 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b1185 | dsbB | +0.5 | 1.0 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1952 | dsrB | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b3899 | frvB | +0.5 | 3.0 | PTS system, fructose-like enzyme IIBC component (VIMSS) | compare |
| b4480 | hdfR | +0.5 | 2.5 | transcriptional regulator HdfR (NCBI) | compare |
| b0858 | ybjO | +0.5 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b1222 | narX | +0.5 | 1.7 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3149 | yraO | +0.5 | 2.4 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b4585 | sroB | +0.5 | 0.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b4435 | isrC | +0.5 | 0.9 | unknown RNA (NCBI) | compare |
| b0851 | nfsA | +0.5 | 1.8 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b2770 | ygcR | +0.5 | 2.6 | putative transport protein (VIMSS) | compare |
| b2784 | relA | +0.5 | 3.1 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1589 | ynfG | +0.5 | 1.0 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b0860 | artJ | +0.5 | 1.9 | arginine transporter subunit (NCBI) | compare |
| b1424 | mdoD | +0.5 | 1.7 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b3378 | yhfU | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0549 | ybcO | +0.5 | 1.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b0357 | yaiN | +0.5 | 0.9 | putative alpha helix chain (VIMSS) | compare |
| b0952 | ymbA | +0.5 | 2.1 | conserved protein (RefSeq) | compare |
| b1827 | kdgR | +0.5 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1742 | b1742 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1079 | flgH | +0.5 | 1.5 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2853 | ygeI | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1383 | ydbL | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2237 | inaA | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b0624 | crcB | +0.5 | 1.5 | camphor resistance protein CrcB (NCBI) | compare |
| b0660 | ybeZ | +0.5 | 1.6 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b1746 | astD | +0.5 | 1.9 | succinylglutamic semialdehyde dehydrogenase (NCBI) | compare |
| b3392 | yrfA | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1266 | yciV | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1679 | sufE | +0.4 | 1.5 | cysteine desufuration protein SufE (NCBI) | compare |
| b1083 | flgL | +0.4 | 1.2 | flagellar hook-associated protein L (NCBI) | compare |
| b2342 | yfcY | +0.4 | 1.9 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b2003 | yeeT | +0.4 | 1.2 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b1481 | b1481 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3238 | yhcN | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1897 | otsB | +0.4 | 1.5 | trehalose-6-phosphate phosphatase, biosynthetic (NCBI) | compare |
| b1945 | fliM | +0.4 | 2.2 | flagellar motor switch protein M (NCBI) | compare |
| b0831 | yliC | +0.4 | 1.6 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4012 | yjaB | +0.4 | 1.7 | predicted acetyltransferase (NCBI) | compare |
| b1344 | ydaO | +0.4 | 1.7 | predicted C32 tRNA thiolase (NCBI) | compare |
| b0764 | modB | +0.4 | 1.7 | molybdate ABC transporter permease protein (NCBI) | compare |
| b2839 | lysR | +0.4 | 1.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2124 | yehS | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b3740 | gidB | +0.4 | 2.9 | glucose-inhibited division protein B (NCBI) | compare |
| b0908 | aroA | +0.4 | 2.7 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b0368 | tauD | +0.4 | 1.4 | taurine dioxygenase (NCBI) | compare |
| b2258 | b2258 | +0.4 | 0.6 | putative transport/receptor protein (VIMSS) | compare |
| b2130 | yehY | +0.4 | 1.9 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2706 | gutM | +0.4 | 1.2 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b1778 | yeaA | +0.4 | 0.9 | methionine sulfoxide reductase B (NCBI) | compare |
| b1334 | fnr | +0.4 | 1.0 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4360 | yjjA | +0.4 | 1.2 | putative glycoprotein/receptor (VIMSS) | compare |
| b0841 | ybjG | +0.4 | 1.5 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b0977 | hyaF | +0.4 | 1.5 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b4277 | yjgZ | +0.4 | 1.6 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b0948 | ycbY | +0.4 | 2.1 | predicted methyltransferase (NCBI) | compare |
| b0968 | yccX | +0.4 | 1.4 | predicted acylphosphatase (NCBI) | compare |
| b4633 | xisD | +0.4 | 1.3 | no description | compare |
| b2445 | yffN | +0.4 | 1.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1075 | flgD | +0.4 | 1.0 | flagellar basal body rod modification protein D (NCBI) | compare |
| b1686 | ydiI | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b3068 | ygjF | +0.4 | 1.1 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b1987 | cbl | +0.4 | 1.8 | DNA-binding transcriptional activator of cysteine biosynthesis (NCBI) | compare |
| b2004 | yeeU | +0.4 | 1.4 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b0345 | lacI | +0.4 | 2.3 | transcriptional repressor of the lac operon (VIMSS) | compare |
| b2809 | b2809 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4330 | yjiH | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1255 | yciC | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b2325 | yfcL | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2410 | yfeH | +0.4 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b4701 | sokX | +0.4 | 0.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0825 | mipB | +0.4 | 1.2 | putative transaldolase (VIMSS) | compare |
| b2810 | csdA | +0.4 | 2.0 | cysteine sulfinate desulfinase (NCBI) | compare |
| b1188 | ycgB | +0.4 | 1.7 | ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | compare |
| b4527 | b1354 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0216 | aspV | +0.4 | 1.2 | tRNA-Asp (NCBI) | compare |