Experiment set2IT081 for Agrobacterium fabrum C58

Compare to:

Xylobiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1307 -7.3 -7.1 dihydroorotase compare
Atu3754 -7.3 -8.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1750 -7.2 -6.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1308 -7.1 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2650 -7.0 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu2289 -7.0 -14.9 anthranilate synthase component I and II compare
Atu2726 -6.9 -18.5 pyruvate carboxylase compare
Atu1141 -6.9 -6.8 Phosphoribosylglycinamide synthetase compare
Atu2036 -6.9 -11.5 acetolactate synthase III, large subunit compare
Atu0432 -6.8 -8.1 O-succinylhomoserine sulfhydrylase compare
Atu0099 -6.8 -11.3 prephenate dehydratase compare
Atu1205 -6.7 -11.2 threonine dehydratase compare
Atu2709 -6.7 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -6.6 -11.1 anthranilate phosphoribosyltransferase compare
Atu4483 -6.6 -16.4 xylose isomerase conserved
Atu1588 -6.6 -9.0 homoserine dehydrogenase compare
Atu3240 -6.5 -11.8 ROK family transcriptional regulator compare
Atu1850 -6.4 -6.0 phosphoribosylformylglycinamidine synthetase II compare
Atu4482 -6.3 -15.0 xylulokinase conserved
Atu3706 -6.2 -8.5 D-3-phosphoglycerate dehydrogenase compare
Atu4481 -6.1 -11.0 LacI family transcriptional regulator compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu2264 -6.0 -12.9 2-isopropylmalate synthase compare
Atu3241 -6.0 -14.7 dehydrogenase conserved
Atu2791 -6.0 -9.2 3-isopropylmalate dehydrogenase compare
Atu1845 -6.0 -4.3 phosphoribosylformylglycinamidine synthase I compare
Atu0641 -5.9 -4.1 hypothetical protein compare
Atu0678 -5.9 -4.1 histidyl-tRNA synthetase compare
Atu3238 -5.9 -13.6 sugar ABC transporter permease conserved
Atu0537 -5.8 -5.7 histidinol dehydrogenase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3885 -5.8 -9.6 inositol monophosphatase compare
Atu0038 -5.7 -6.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0679 -5.7 -6.8 ATP phosphoribosyltransferase compare
Atu3755 -5.6 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3483 -5.6 -8.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2015 -5.5 -15.9 aminotransferase compare
Atu3237 -5.5 -9.9 sugar ABC transporter permease conserved
Atu0400 -5.4 -5.7 orotate phosphoribosyltransferase compare
Atu3739 -5.4 -2.8 phosphoglycerate kinase compare
Atu1075 -5.4 -8.5 amidophosphoribosyltransferase compare
Atu1688 -5.4 -7.4 indole-3-glycerol-phosphate synthase compare
Atu3482 -5.4 -9.2 pantoate--beta-alanine ligase compare
Atu0647 -5.3 -5.2 phosphoribosylamine--glycine ligase compare
Atu0399 -5.2 -6.2 dihydroorotase compare
Atu3731 -5.2 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3239 -5.2 -18.3 sugar ABC transporter substrate-binding protein conserved
Atu2790 -5.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0486 -5.1 -7.8 dihydroorotate dehydrogenase compare
Atu0298 -5.1 -8.6 orotidine 5 compare
Atu3242 -5.0 -7.3 hypothetical protein conserved
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu2040 -4.9 -7.5 phosphoserine phosphatase compare
Atu1359 -4.9 -1.9 dnaK deletion suppressor protein compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu2718 -4.8 -9.8 homoserine O-succinyltransferase compare
Atu3469 -4.8 -3.3 phosphoglyceromutase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.7 -3.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3236 -4.6 -15.9 sugar ABC transporter ATPase compare
Atu3783 -4.6 -17.3 glutamate synthase subunit beta compare
Atu1464 -4.6 -8.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu3784 -4.5 -26.9 glutamate synthase large subunit compare
Atu1589 -4.4 -10.6 aminotransferase, class I compare
Atu0030 -4.4 -2.5 phosphocarrier protein HPr compare
Atu1456 -4.3 -13.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2548 -4.2 -18.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1140 -4.1 -4.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1686 -4.0 -18.2 peptidyl-prolyl cis-trans isomerse D compare
Atu1844 -3.8 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu4773 -3.6 -2.7 two component response regulator compare
Atu1454 -3.5 -10.9 siroheme synthase compare
Atu1463 -3.4 -10.5 glycine cleavage system component H compare
Atu2155 -3.4 -19.4 methionine synthase compare
Atu0792 -3.3 -9.4 hypothetical protein compare
Atu4096 -3.3 -10.7 nicotinate-nucleotide pyrophosphorylase compare
Atu2747 -3.3 -13.2 hypothetical protein compare
Atu1462 -3.2 -12.8 glycine cleavage system protein P2 compare
Atu1455 -3.1 -4.6 hypothetical protein compare
Atu0598 -3.1 -11.1 phosphogluconate dehydratase compare
Atu4098 -3.0 -12.4 quinolinate synthetase compare
Atu1620 -2.9 -14.3 triosephosphate isomerase compare
Atu0876 -2.9 -3.1 superoxide dismutase compare
Atu0040 -2.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0502 -2.8 -8.2 acetyl-CoA acetyltransferase compare
Atu2205 -2.7 -6.0 transcriptional regulator, MarR family compare
Atu0503 -2.7 -13.2 enoyl-CoA hydratase compare
Atu0501 -2.6 -13.9 acyl-CoA dehydrogenase compare
Atu0031 -2.5 -2.1 PTS system, IIA component compare
Atu1446 -2.5 -2.9 two component response regulator compare
Atu0322 -2.4 -8.8 enoyl CoA hydratase compare
Atu8018 -2.4 -1.6 hypothetical protein compare
Atu0029 -2.4 -7.2 S-adenosylhomocysteine hydrolase compare
Atu0062 -2.3 -8.9 transcriptional regulator, ROK family compare
Atu3997 -2.1 -13.0 biotin synthetase compare
Atu0188 -2.0 -3.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0769 -2.0 -2.9 protoheme IX farnesyltransferase compare
Atu4097 -2.0 -9.7 L-aspartate oxidase compare
Atu5164 -1.9 -1.3 type IV secretion protein AvhB3 compare
Atu3288 -1.9 -7.3 hydroxyethylthiazole kinase compare
Atu1457 -1.8 -2.9 hypothetical protein compare
Atu3290 -1.8 -11.2 phosphomethylpyrimidine kinase compare
Atu0331 -1.8 -3.5 sigma-54 modulation protein compare
Atu6114 -1.8 -2.7 hypothetical protein compare
Atu1748 -1.7 -9.9 NIFU-like protein compare
Atu8115 -1.7 -4.1 Hypothetical Protein compare
Atu0405 -1.7 -11.9 long-chain-fatty-acid-CoA-ligase compare
Atu2569 -1.7 -12.8 thiamine biosynthesis protein compare
Atu5443 -1.6 -5.8 TetR family transcriptional regulator compare
Atu3289 -1.6 -5.7 thiamine-phosphate pyrophosphorylase compare
Atu4711 -1.6 -5.5 two component sensor kinase compare
Atu2125 -1.6 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -1.6 -2.6 hypothetical protein compare
Atu2800 -1.5 -3.0 precorrin-3B C17-methyltransferase compare
Atu0346 -1.5 -2.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1774 -1.5 -6.8 ABC transporter, substrate binding protein (peptide) compare
Atu1685 -1.5 -1.4 hypothetical protein compare
Atu4000 -1.5 -11.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3998 -1.4 -9.5 8-amino-7-oxononanoate synthase compare
Atu3999 -1.4 -2.2 dithiobiotin synthetase compare
Atu2127 -1.3 -6.9 L-carnitine dehydratase compare
Atu4173 -1.3 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu4514 -1.3 -2.5 RpiR family transcriptional regulator compare
Atu3730 -1.3 -1.4 hypothetical protein compare
Atu0361 -1.3 -2.7 transcriptional regulator compare
Atu1604 -1.3 -8.9 poly-beta-hydroxybutyrate synthase compare
Atu2554 -1.3 -2.3 lysyl-tRNA synthetase compare
Atu2799 -1.2 -4.6 precorrin-6x reductase compare
Atu2770 -1.2 -5.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2209 -1.2 -4.6 pyrroline-5-carboxylate reductase compare
Atu0434 -1.2 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3908 -1.2 -6.8 GntR family transcriptional regulator compare
Atu0190 -1.2 -5.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0422 -1.2 -1.5 ABC transporter, membrane spanning protein compare
Atu0401 -1.2 -5.5 fructokinase compare
Atu3740 -1.1 -5.0 fructose bisphosphate aldolase compare
Atu2804 -1.1 -7.1 cobaltochelatase subunit compare
Atu4217 -1.1 -2.1 TetR family transcriptional regulator compare
Atu4317 -1.1 -2.7 TetR family transcriptional regulator compare
Atu2115 -1.1 -5.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2821 -1.1 -4.8 transcriptional regulator, GntR family compare
Atu1242 -1.0 -6.1 cytochrome oxidase assembly factor compare
Atu5430 -1.0 -1.3 hypothetical protein compare
Atu0777 -1.0 -0.9 hypothetical protein compare
Atu1891 -1.0 -2.9 cobalamin biosynthesis protein compare
Atu0189 -1.0 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2795 -1.0 -4.7 cobalamin biosynthetic protein compare
Atu1542 -1.0 -5.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1904 -1.0 -2.4 transcriptional regulator compare
Atu2796 -1.0 -3.7 precorrin-4 C11-methyltransferase compare
Atu2809 -1.0 -4.0 cobalamin biosynthesis protein compare
Atu4001 -1.0 -4.5 3-oxoacyl-ACP synthase compare
Atu2020 -1.0 -2.6 transcriptional regulator, TetR family compare
Atu0981 -1.0 -6.1 glutamate-ammonia-ligase adenylyltransferase compare
Atu2808 -1.0 -5.5 cobyric acid synthase compare
Atu1770 -1.0 -5.3 glutamine synthetase compare
Atu0421 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu3732 -0.9 -4.7 hemolysin compare
Atu2803 -0.9 -3.2 Cobalamin biosynthesis associated protein compare
Atu3162 -0.9 -5.2 LacI family transcriptional regulator compare
Atu3235 -0.9 -5.9 hypothetical protein compare
Atu2123 -0.9 -3.2 methylenetetrahydrofolate reductase compare
Atu2798 -0.9 -3.2 precorrin-6y methyltransferase compare
Atu1323 -0.9 -2.6 hypothetical protein compare
Atu1810 -0.9 -1.1 hypothetical protein compare
Atu2793 -0.9 -4.1 cobyrinic acid a,c-diamide synthase compare
Atu0115 -0.8 -1.0 hypothetical protein compare
Atu1285 -0.8 -4.0 metal dependent hydrolase compare
Atu2805 -0.8 -4.0 cobalamin synthesis protein compare
Atu1889 -0.8 -1.8 diacylglycerol kinase compare
Atu0566 -0.8 -1.4 hypothetical protein compare
Atu5540 -0.8 -0.8 hypothetical protein compare
Atu3486 -0.8 -1.5 DeoR family transcriptional regulator compare
Atu1286 -0.8 -2.0 hypothetical protein compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu0771 -0.8 -4.8 cytochrome c oxidase subunit III compare
Atu1258 -0.8 -3.0 ATP-dependent Clp protease, proteolytic subunit compare
Atu2719 -0.8 -5.5 aldose epimerase compare
Atu5513 -0.8 -0.9 cold shock protein compare
Atu2733 -0.8 -2.0 hypothetical protein compare
Atu1546 -0.8 -2.7 transcriptional regulator, MerR family compare
Atu2267 -0.8 -3.7 hypothetical protein compare
Atu2802 -0.7 -3.9 precorrin-8X methylmutase compare
Atu1074 -0.7 -5.3 NAD/NADP dependent oxidoreductase compare
Atu2532 -0.7 -2.6 transcriptional regulator, MarR family compare
Atu3496 -0.7 -2.8 hypothetical protein compare
Atu1449 -0.7 -3.5 potassium uptake protein compare
Atu4346 -0.7 -2.0 hypothetical protein compare
Atu2801 -0.7 -2.7 precorrin-2 C20 methyltransferase compare
Atu1874 -0.7 -2.2 RecA protein compare
Atu2124 -0.7 -3.2 transcriptional regulator, ArsR family compare
Atu3598 -0.7 -1.9 thiol:disulfide interchange protein compare
Atu0894 -0.7 -1.4 ABC transporter, membrane spanning protein compare
Atu4743 -0.7 -3.6 LacI family transcriptional regulator compare
Atu1445 -0.7 -2.7 two component sensor kinase compare
Atu2634 -0.7 -1.4 hypothetical protein compare
Atu2807 -0.7 -3.7 cob(I)alamin adenosyltransferase compare
Atu0966 -0.7 -1.9 hypothetical protein compare
Atu0893 -0.7 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0768 -0.7 -4.2 cytochrome-c oxidase chain I compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Xylobiose in Agrobacterium fabrum C58

For carbon source Xylobiose across organisms