Experiment set2IT080 for Agrobacterium fabrum C58

Compare to:

Xylobiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -8.5 -6.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -7.7 -5.3 3-isopropylmalate dehydrogenase compare
Atu1687 -7.7 -7.5 anthranilate phosphoribosyltransferase compare
Atu0486 -7.3 -5.1 dihydroorotate dehydrogenase compare
Atu1308 -7.2 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu4482 -6.9 -10.6 xylulokinase conserved
Atu2709 -6.9 -14.0 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -6.8 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu3240 -6.7 -11.2 ROK family transcriptional regulator compare
Atu2264 -6.7 -12.0 2-isopropylmalate synthase compare
Atu2726 -6.7 -20.5 pyruvate carboxylase compare
Atu0432 -6.6 -9.1 O-succinylhomoserine sulfhydrylase compare
Atu1205 -6.6 -11.0 threonine dehydratase compare
Atu1141 -6.6 -6.4 Phosphoribosylglycinamide synthetase compare
Atu1075 -6.6 -6.4 amidophosphoribosyltransferase compare
Atu4483 -6.5 -15.1 xylose isomerase conserved
Atu2650 -6.4 -13.1 glycerol-3-phosphate dehydrogenase compare
Atu1140 -6.4 -6.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1588 -6.3 -8.7 homoserine dehydrogenase compare
Atu2040 -6.3 -4.4 phosphoserine phosphatase compare
Atu3242 -6.3 -8.6 hypothetical protein conserved
Atu0099 -6.2 -11.1 prephenate dehydratase compare
Atu2289 -6.2 -19.1 anthranilate synthase component I and II compare
Atu0679 -6.0 -7.2 ATP phosphoribosyltransferase compare
Atu0038 -6.0 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -6.0 -15.4 acetolactate synthase III, large subunit compare
Atu1307 -5.9 -7.1 dihydroorotase compare
Atu0030 -5.9 -2.3 phosphocarrier protein HPr compare
Atu0641 -5.8 -3.9 hypothetical protein compare
Atu3706 -5.8 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu3238 -5.8 -13.5 sugar ABC transporter permease conserved
Atu3237 -5.8 -7.6 sugar ABC transporter permease conserved
Atu3885 -5.8 -8.9 inositol monophosphatase compare
Atu0400 -5.8 -6.8 orotate phosphoribosyltransferase compare
Atu3482 -5.7 -11.5 pantoate--beta-alanine ligase compare
Atu1688 -5.7 -5.5 indole-3-glycerol-phosphate synthase compare
Atu3755 -5.6 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3241 -5.6 -15.3 dehydrogenase conserved
Atu0399 -5.5 -7.6 dihydroorotase compare
Atu0537 -5.5 -6.6 histidinol dehydrogenase compare
Atu1850 -5.5 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3483 -5.3 -8.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2718 -5.3 -8.8 homoserine O-succinyltransferase compare
Atu0298 -5.3 -8.8 orotidine 5 compare
Atu3239 -5.2 -17.7 sugar ABC transporter substrate-binding protein conserved
Atu2790 -5.1 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu3707 -5.1 -4.5 phosphoserine aminotransferase compare
Atu0647 -4.9 -6.7 phosphoribosylamine--glycine ligase compare
Atu3783 -4.8 -17.7 glutamate synthase subunit beta compare
Atu1359 -4.8 -1.9 dnaK deletion suppressor protein compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu3236 -4.8 -14.1 sugar ABC transporter ATPase compare
Atu1685 -4.8 -1.8 hypothetical protein compare
Atu1845 -4.8 -5.8 phosphoribosylformylglycinamidine synthase I compare
Atu0039 -4.7 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3739 -4.7 -3.6 phosphoglycerate kinase compare
Atu4481 -4.7 -8.0 LacI family transcriptional regulator compare
Atu2015 -4.6 -14.1 aminotransferase compare
Atu1030 -4.6 -3.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0678 -4.5 -7.8 histidyl-tRNA synthetase compare
Atu1456 -4.4 -13.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3784 -4.2 -25.2 glutamate synthase large subunit compare
Atu1446 -4.1 -2.9 two component response regulator compare
Atu1686 -4.0 -19.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1589 -4.0 -10.0 aminotransferase, class I compare
Atu0043 -4.0 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu0502 -3.9 -10.2 acetyl-CoA acetyltransferase compare
Atu2548 -3.9 -20.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0017 -3.8 -4.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0503 -3.7 -17.4 enoyl-CoA hydratase compare
Atu0598 -3.6 -10.7 phosphogluconate dehydratase compare
Atu0792 -3.6 -6.7 hypothetical protein compare
Atu2747 -3.6 -16.5 hypothetical protein compare
Atu3731 -3.6 -10.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0501 -3.5 -13.6 acyl-CoA dehydrogenase compare
Atu1462 -3.3 -14.7 glycine cleavage system protein P2 compare
Atu2155 -3.3 -19.2 methionine synthase compare
Atu1454 -3.2 -9.0 siroheme synthase compare
Atu1464 -3.2 -7.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu4096 -3.1 -11.1 nicotinate-nucleotide pyrophosphorylase compare
Atu4098 -3.1 -9.9 quinolinate synthetase compare
Atu8018 -3.0 -1.6 hypothetical protein compare
Atu1463 -2.9 -5.5 glycine cleavage system component H compare
Atu0040 -2.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1455 -2.7 -4.3 hypothetical protein compare
Atu4773 -2.7 -1.9 two component response regulator compare
Atu3289 -2.7 -4.4 thiamine-phosphate pyrophosphorylase compare
Atu3469 -2.7 -3.2 phosphoglyceromutase compare
Atu0322 -2.5 -7.1 enoyl CoA hydratase compare
Atu0062 -2.5 -9.7 transcriptional regulator, ROK family compare
Atu1620 -2.5 -11.9 triosephosphate isomerase compare
Atu0422 -2.5 -3.0 ABC transporter, membrane spanning protein compare
Atu4097 -2.4 -9.9 L-aspartate oxidase compare
Atu0405 -2.4 -14.9 long-chain-fatty-acid-CoA-ligase compare
Atu6098 -2.2 -1.2 transcriptional regulator, HTH family compare
Atu1748 -2.2 -10.2 NIFU-like protein compare
Atu2205 -2.2 -7.6 transcriptional regulator, MarR family compare
Atu0029 -2.2 -6.3 S-adenosylhomocysteine hydrolase compare
Atu0331 -2.2 -3.8 sigma-54 modulation protein compare
Atu0769 -2.2 -2.5 protoheme IX farnesyltransferase compare
Atu3997 -2.2 -14.7 biotin synthetase compare
Atu0346 -2.2 -5.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4711 -1.9 -5.6 two component sensor kinase compare
Atu0876 -1.9 -2.4 superoxide dismutase compare
Atu3290 -1.8 -8.2 phosphomethylpyrimidine kinase compare
Atu3288 -1.7 -5.6 hydroxyethylthiazole kinase compare
Atu4000 -1.7 -11.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0188 -1.7 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2569 -1.6 -11.0 thiamine biosynthesis protein compare
Atu0894 -1.6 -3.0 ABC transporter, membrane spanning protein compare
Atu3998 -1.6 -9.5 8-amino-7-oxononanoate synthase compare
Atu8115 -1.6 -3.7 Hypothetical Protein compare
Atu6114 -1.5 -3.6 hypothetical protein compare
Atu2115 -1.5 -8.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4217 -1.5 -1.7 TetR family transcriptional regulator compare
Atu4001 -1.5 -7.7 3-oxoacyl-ACP synthase compare
Atu3999 -1.4 -2.9 dithiobiotin synthetase compare
Atu2800 -1.4 -2.6 precorrin-3B C17-methyltransferase compare
Atu0031 -1.4 -1.6 PTS system, IIA component compare
Atu5443 -1.4 -4.0 TetR family transcriptional regulator compare
Atu1542 -1.3 -4.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1457 -1.3 -2.2 hypothetical protein compare
Atu3763 -1.3 -1.6 hypothetical protein compare
Atu2127 -1.3 -6.6 L-carnitine dehydratase compare
Atu1774 -1.2 -5.5 ABC transporter, substrate binding protein (peptide) compare
Atu8012 -1.2 -2.1 hypothetical protein compare
Atu1604 -1.2 -8.8 poly-beta-hydroxybutyrate synthase compare
Atu0190 -1.2 -6.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3908 -1.2 -8.1 GntR family transcriptional regulator compare
Atu2808 -1.1 -6.9 cobyric acid synthase compare
Atu2209 -1.1 -3.5 pyrroline-5-carboxylate reductase compare
Atu0361 -1.1 -1.9 transcriptional regulator compare
Atu2809 -1.1 -5.9 cobalamin biosynthesis protein compare
Atu1891 -1.1 -2.4 cobalamin biosynthesis protein compare
Atu3732 -1.1 -5.3 hemolysin compare
Atu2801 -1.1 -3.1 precorrin-2 C20 methyltransferase compare
Atu2532 -1.1 -3.3 transcriptional regulator, MarR family compare
Atu2770 -1.0 -4.4 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2793 -1.0 -3.0 cobyrinic acid a,c-diamide synthase compare
Atu2798 -1.0 -2.6 precorrin-6y methyltransferase compare
Atu2796 -1.0 -5.3 precorrin-4 C11-methyltransferase compare
Atu3712 -1.0 -1.4 hypothetical protein compare
Atu2804 -1.0 -6.0 cobaltochelatase subunit compare
Atu2286 -1.0 -1.5 hypothetical protein compare
Atu2807 -1.0 -4.5 cob(I)alamin adenosyltransferase compare
Atu3740 -1.0 -4.8 fructose bisphosphate aldolase compare
Atu4317 -1.0 -2.9 TetR family transcriptional regulator compare
Atu0434 -1.0 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2805 -0.9 -4.2 cobalamin synthesis protein compare
Atu0768 -0.9 -5.9 cytochrome-c oxidase chain I compare
Atu0601 -0.9 -5.8 oxidoreductase compare
Atu0101 -0.9 -2.7 cytochrome c compare
Atu3162 -0.9 -4.4 LacI family transcriptional regulator compare
Atu5157 -0.9 -1.8 hypothetical protein compare
Atu0981 -0.9 -5.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu1770 -0.9 -5.5 glutamine synthetase compare
Atu2803 -0.9 -3.2 Cobalamin biosynthesis associated protein compare
Atu3518 -0.9 -5.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0189 -0.9 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2719 -0.9 -5.4 aldose epimerase compare
Atu4108 -0.9 -5.1 ribonuclease D compare
Atu2125 -0.9 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1242 -0.9 -4.6 cytochrome oxidase assembly factor compare
Atu2795 -0.9 -2.9 cobalamin biosynthetic protein compare
Atu4173 -0.9 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1705 -0.9 -3.8 SEC-independent protein translocase protein compare
Atu5125 -0.9 -2.7 GntR family transcriptional regulator compare
Atu1354 -0.9 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2554 -0.9 -1.6 lysyl-tRNA synthetase compare
Atu2821 -0.8 -4.3 transcriptional regulator, GntR family compare
Atu2123 -0.8 -2.7 methylenetetrahydrofolate reductase compare
Atu3337 -0.8 -4.1 LacI family transcriptional regulator compare
Atu2020 -0.8 -2.1 transcriptional regulator, TetR family compare
Atu5540 -0.8 -0.8 hypothetical protein compare
Atu0837 -0.8 -4.0 transcriptional regulator, MarR family compare
Atu4223 -0.8 -1.2 sarcosine oxidase delta subunit compare
Atu3234 -0.8 -4.9 NAD binding oxidoreductase compare
Atu4346 -0.8 -2.7 hypothetical protein compare
Atu3963 -0.8 -5.4 GntR family transcriptional regulator compare
Atu0205 -0.8 -5.4 methylmalonate-semialdehyde dehydrogenase compare
Atu3727 -0.8 -2.4 hypothetical protein compare
Atu2428 -0.8 -4.8 exopolysaccharide production protein PssB compare
Atu0846 -0.8 -2.8 transcriptional regulator, MarR family compare
Atu1285 -0.8 -3.8 metal dependent hydrolase compare
Atu0770 -0.8 -3.7 cytochrome C oxidase assembly protein compare
Atu0421 -0.8 -1.1 ABC transporter, membrane spanning protein compare
Atu3486 -0.8 -1.6 DeoR family transcriptional regulator compare
Atu2802 -0.7 -3.8 precorrin-8X methylmutase compare
Atu2472 -0.7 -1.1 hypothetical protein compare
Atu0976 -0.7 -1.6 cycL protein compare
Atu0201 -0.7 -1.2 hypothetical protein compare
Atu0152 -0.7 -1.2 hypothetical protein compare
Atu4232 -0.7 -2.1 GntR family transcriptional regulator compare
Atu0354 -0.7 -1.2 ferric uptake regulator compare
Atu2633 -0.7 -1.3 RhtB family transporter compare
Atu3235 -0.7 -4.4 hypothetical protein compare
Atu0895 -0.7 -1.8 ABC transporter, substrate binding protein compare
Atu1074 -0.7 -4.3 NAD/NADP dependent oxidoreductase compare
Atu5429 -0.7 -2.5 transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Xylobiose in Agrobacterium fabrum C58

For carbon source Xylobiose across organisms