Experiment set2IT079 for Pseudomonas simiae WCS417

Compare to:

L-Valine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -8.4 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25705 -7.3 -2.3 lipoate--protein ligase compare
PS417_18600 -7.1 -2.3 isopropylmalate isomerase compare
PS417_27835 -7.0 -6.5 endoribonuclease compare
PS417_01570 -7.0 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_17565 -6.8 -2.2 branched-chain amino acid aminotransferase compare
PS417_18595 -6.7 -2.5 3-isopropylmalate dehydratase compare
PS417_26740 -6.5 -7.6 homoserine acetyltransferase compare
PS417_27040 -6.4 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_18585 -6.3 -3.7 3-isopropylmalate dehydrogenase compare
PS417_01855 -6.3 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -6.2 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -6.1 -9.3 histidinol dehydrogenase compare
PS417_18560 -6.1 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -6.1 -7.2 ketol-acid reductoisomerase compare
PS417_23805 -5.9 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_05595 -5.8 -11.2 ornithine carbamoyltransferase compare
PS417_02510 -5.8 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -5.7 -11.6 acetolactate synthase 3 catalytic subunit compare
PS417_17545 -5.6 -2.5 2-oxoisovalerate dehydrogenase compare
PS417_26745 -5.6 -5.8 methionine biosynthesis protein MetW compare
PS417_20160 -5.6 -3.9 cysteine synthase compare
PS417_17560 -5.6 -3.2 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_20125 -5.6 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_19335 -5.4 -2.4 isochorismatase compare
PS417_00185 -5.3 -3.6 tryptophan synthase subunit beta compare
PS417_01850 -5.3 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07640 -5.3 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_16465 -5.0 -9.6 sirohydrochlorin ferrochelatase compare
PS417_12855 -5.0 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21275 -4.8 -11.6 GntR family transcriptional regulator conserved
PS417_24745 -4.8 -3.4 gamma-glutamyl phosphate reductase compare
PS417_25720 -4.8 -6.9 anthranilate synthase component II compare
PS417_25725 -4.7 -10.8 anthranilate synthase component I compare
PS417_27795 -4.7 -0.9 orotate phosphoribosyltransferase compare
PS417_22520 -4.6 -1.6 histidine kinase compare
PS417_01565 -4.5 -3.1 imidazole glycerol phosphate synthase compare
PS417_06375 -4.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_26890 -4.4 -6.4 dihydroxy-acid dehydratase compare
PS417_21750 -4.3 -17.8 acetyl-CoA synthetase compare
PS417_00180 -4.3 -1.7 tryptophan synthase subunit alpha compare
PS417_21065 -4.2 -1.6 3-methylitaconate isomerase compare
PS417_10985 -4.2 -0.8 NADH:flavin oxidoreductase compare
PS417_12290 -4.2 -5.5 sulfite reductase compare
PS417_26995 -4.0 -11.0 phosphoserine phosphatase compare
PS417_23725 -4.0 -2.9 methylmalonate-semialdehyde dehydrogenase compare
PS417_01605 -4.0 -1.5 phosphoglycerate mutase compare
PS417_26040 -4.0 -4.6 malate synthase compare
PS417_23545 -3.9 -1.9 gamma-glutamyl kinase compare
PS417_21480 -3.9 -1.7 23S rRNA pseudouridylate synthase compare
PS417_27605 -3.9 -5.2 hypothetical protein compare
PS417_23730 -3.9 -11.1 LysR family transcriptional regulator conserved
PS417_25710 -3.8 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_27195 -3.8 -1.0 N-acetylglutamate synthase compare
PS417_05570 -3.7 -4.5 DeoR faimly transcriptional regulator compare
PS417_28220 -3.7 -1.9 LysR family transcriptional regulator compare
PS417_00900 -3.7 -2.8 4-aminobutyrate aminotransferase compare
PS417_27290 -3.7 -1.6 hypothetical protein compare
PS417_16570 -3.6 -8.6 isocitrate lyase compare
PS417_08155 -3.5 -1.7 integration host factor subunit beta compare
PS417_23995 -3.5 -0.6 preprotein translocase subunit SecG compare
PS417_07470 -3.4 -1.5 hypothetical protein compare
PS417_27610 -3.4 -6.6 hypothetical protein compare
PS417_13835 -3.4 -6.4 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) conserved
PS417_27690 -3.4 -4.0 XRE family transcriptional regulator compare
PS417_13840 -3.3 -4.4 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PS417_10535 -3.3 -6.6 hypothetical protein compare
PS417_12665 -3.3 -6.9 hypothetical protein conserved
PS417_20610 -3.3 -0.8 hypothetical protein compare
PS417_17000 -3.2 -2.4 MerR family transcriptional regulator compare
PS417_08230 -3.2 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17550 -3.0 -2.3 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_05165 -3.0 -2.9 cytosol aminopeptidase compare
PS417_01180 -3.0 -8.4 ribosomal protein S6 modification protein compare
PS417_13510 -3.0 -1.1 polyketide cyclase compare
PS417_18530 -2.9 -3.0 O-succinylhomoserine sulfhydrylase compare
PS417_26390 -2.8 -1.8 acyltransferase compare
PS417_27035 -2.8 -4.9 FAD-linked oxidase compare
PS417_01580 -2.8 -1.2 imidazole glycerol phosphate synthase compare
PS417_19805 -2.8 -3.0 flagellar M-ring protein FliF compare
PS417_15935 -2.8 -2.0 Rrf2 family transcriptional regulator compare
PS417_19730 -2.8 -2.2 flagellar biosynthesis protein FliR compare
PS417_01920 -2.7 -1.7 ATP-dependent protease subunit HslV compare
PS417_27010 -2.6 -8.8 threonine dehydratase compare
PS417_01915 -2.6 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23110 -2.6 -4.2 2-isopropylmalate synthase compare
PS417_24265 -2.5 -5.3 ABC transporter ATP-binding protein compare
PS417_24370 -2.5 -0.8 (2Fe-2S)-binding protein compare
PS417_08685 -2.5 -1.5 flagellar hook-length control protein FliK compare
PS417_01095 -2.5 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_21700 -2.5 -3.9 arginine N-succinyltransferase compare
PS417_05975 -2.4 -0.6 chemotaxis protein CheW compare
PS417_26730 -2.4 -0.9 pyrroline-5-carboxylate reductase compare
PS417_25715 -2.4 -3.0 anthranilate phosphoribosyltransferase compare
PS417_21125 -2.4 -6.6 phosphoadenosine phosphosulfate reductase compare
PS417_17795 -2.3 -1.6 ABC transporter permease compare
PS417_23580 -2.3 -1.0 peptidylprolyl isomerase compare
PS417_21705 -2.3 -4.0 arginine N-succinyltransferase compare
PS417_01185 -2.3 -6.0 ribosomal protein S6 modification protein compare
PS417_04365 -2.3 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22375 -2.2 -0.7 cold-shock protein compare
PS417_05840 -2.2 -2.8 LuxR family transcriptional regulator compare
PS417_20580 -2.2 -11.9 isocitrate dehydrogenase compare
PS417_20635 -2.2 -0.8 ABC transporter ATP-binding protein compare
PS417_13490 -2.2 -1.4 hypothetical protein compare
PS417_27865 -2.2 -3.2 LysR family transcriptional regulator compare
PS417_09695 -2.1 -1.7 hydrolase compare
PS417_25650 -2.1 -3.2 anhydro-N-acetylmuramic acid kinase compare
PS417_19275 -2.1 -1.1 hypothetical protein compare
PS417_16535 -2.1 -2.3 NUDIX hydrolase compare
PS417_06500 -2.1 -1.0 hypothetical protein compare
PS417_27210 -2.1 -6.4 AsnC family transcriptional regulator conserved
PS417_23950 -2.1 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_27215 -2.1 -2.6 hypothetical protein compare
PS417_21510 -2.1 -1.2 histidine kinase compare
PS417_26645 -2.1 -2.6 chemotaxis protein compare
PS417_03970 -2.0 -1.0 1-phosphofructokinase compare
PS417_08125 -2.0 -0.7 prephenate dehydratase compare
PS417_20785 -2.0 -3.7 transcriptional regulator compare
PS417_01510 -2.0 -1.9 hypothetical protein compare
PS417_10245 -2.0 -1.3 hypothetical protein compare
PS417_15095 -2.0 -2.9 hypothetical protein compare
PS417_11770 -2.0 -1.5 pyruvate dehydrogenase compare
PS417_27595 -2.0 -1.9 recombinase XerC compare
PS417_26175 -1.9 -0.7 sarcosine oxidase subunit gamma compare
PS417_08225 -1.9 -4.2 acetolactate synthase compare
PS417_08730 -1.9 -1.7 cytochrome C compare
PS417_20855 -1.9 -1.0 hypothetical protein compare
PS417_19885 -1.9 -1.8 flagellar basal body rod protein FlgG compare
PS417_16005 -1.9 -2.7 ATPase compare
PS417_01710 -1.9 -4.2 histidine utilization repressor compare
PS417_02415 -1.9 -2.9 phosphoserine phosphatase compare
PS417_22445 -1.9 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_25790 -1.9 -4.5 aminoglycoside phosphotransferase compare
PS417_21570 -1.8 -4.0 flagellar basal body rod protein FlgB compare
PS417_12595 -1.8 -1.5 transcriptional regulator compare
PS417_08540 -1.8 -2.0 RNA helicase compare
PS417_27870 -1.8 -1.9 ATP-dependent DNA helicase RecG compare
PS417_19965 -1.8 -8.9 histidine kinase compare
PS417_13855 -1.8 -0.9 acetyl-CoA acetyltransferase compare
PS417_15090 -1.8 -2.4 hypothetical protein compare
PS417_09235 -1.8 -0.7 molecular chaperone compare
PS417_01210 -1.8 -7.1 hypothetical protein compare
PS417_19785 -1.8 -2.6 flagellar biogenesis protein compare
PS417_10995 -1.7 -2.0 GntR family transcriptional regulator compare
PS417_06335 -1.7 -1.9 S-formylglutathione hydrolase compare
PS417_18590 -1.7 -2.0 SAM-dependent methyltransferase compare
PS417_01705 -1.7 -5.3 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
PS417_02950 -1.7 -1.8 tRNA-dihydrouridine synthase B compare
PS417_16065 -1.7 -2.5 3-phytase compare
PS417_00455 -1.7 -1.4 hypothetical protein compare
PS417_18690 -1.7 -2.7 aromatic amino acid aminotransferase compare
PS417_10725 -1.7 -4.8 excinuclease ABC subunit C compare
PS417_22570 -1.7 -0.7 H-NS histone compare
PS417_19600 -1.7 -0.9 exonuclease compare
PS417_09930 -1.7 -1.3 hypothetical protein compare
PS417_14980 -1.7 -0.8 universal stress protein UspA compare
PS417_01995 -1.6 -1.6 hypothetical protein compare
PS417_02765 -1.6 -1.2 phosphate starvation-inducible protein PsiF compare
PS417_03515 -1.6 -1.3 type III secretion protein compare
PS417_15465 -1.6 -2.4 carboxynorspermidine decarboxylase compare
PS417_15110 -1.6 -5.0 protein BatD compare
PS417_02340 -1.6 -2.4 LysR family transcriptional regulator compare
PS417_23690 -1.6 -2.6 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
PS417_26805 -1.6 -0.7 cell division protein FtsE compare
PS417_08740 -1.6 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_22115 -1.6 -1.8 transcriptional regulator compare
PS417_21595 -1.5 -2.0 flagellar biosynthesis protein FlgN compare
PS417_26420 -1.5 -1.1 hypothetical protein compare
PS417_11845 -1.5 -2.2 RpiR family transcriptional regulator compare
PS417_25225 -1.5 -1.6 MFS transporter compare
PS417_24155 -1.5 -1.5 ATP-binding protein compare
PS417_04080 -1.5 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_21430 -1.5 -1.7 3-oxoacyl-ACP synthase compare
PS417_24100 -1.5 -4.6 transcriptional regulator PdhR compare
PS417_07455 -1.5 -1.2 glutamine amidotransferase compare
PS417_02080 -1.5 -3.4 histidine ammonia-lyase compare
PS417_22815 -1.5 -4.1 permease compare
PS417_10675 -1.5 -0.7 TetR family transcriptional regulator compare
PS417_19710 -1.5 -5.7 flagellar biosynthesis protein FlhA compare
PS417_08200 -1.4 -2.0 hypothetical protein compare
PS417_05730 -1.4 -2.2 tail protein compare
PS417_21585 -1.4 -5.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_15610 -1.4 -2.4 GDP-mannose pyrophosphatase compare
PS417_05365 -1.4 -1.2 FAD-binding protein compare
PS417_06685 -1.4 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_21555 -1.4 -3.8 flagellar hook protein FlgE compare
PS417_19790 -1.4 -1.3 ATP synthase compare
PS417_03705 -1.4 -2.6 2-alkenal reductase compare
PS417_12565 -1.4 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_06865 -1.4 -1.8 transporter compare
PS417_19735 -1.4 -2.5 flagellar biosynthesis protein FliQ compare
PS417_10810 -1.4 -1.3 hypothetical protein compare
PS417_19755 -1.4 -0.8 flagellar motor switch protein FliM compare
PS417_03790 -1.4 -2.2 pilus assembly protein PilW compare
PS417_19800 -1.4 -1.2 flagellar motor switch protein FliG compare
PS417_17650 -1.4 -2.2 proteinase compare
PS417_11440 -1.4 -1.0 hypothetical protein compare
PS417_00080 -1.4 -6.1 potassium transporter peripheral membrane component compare
PS417_16195 -1.4 -0.7 AraC family transcriptional regulator compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source L-Valine in Pseudomonas simiae WCS417

For carbon source L-Valine across organisms