Experiment set2IT079 for Bosea sp. OAE506

Compare to:

R2A outgrowth control

200 most important genes:

  gene name fitness t score description  
ABIE41_RS08370 -5.6 -2.4 metal ABC transporter permease compare
ABIE41_RS16095 -4.6 -2.2 glycosyltransferase family 2 protein compare
ABIE41_RS00825 -4.5 -1.6 hypothetical protein compare
ABIE41_RS22955 -4.0 -2.4 heme o synthase compare
ABIE41_RS02845 -3.8 -2.5 glycosyltransferase family 2 protein compare
ABIE41_RS03095 -3.8 -2.4 phosphomannomutase compare
ABIE41_RS22525 -3.2 -5.3 4'-phosphopantetheinyl transferase superfamily protein compare
ABIE41_RS23985 -3.0 -5.7 ABC transporter ATP-binding protein compare
ABIE41_RS04950 -3.0 -1.9 3-hydroxyacyl-ACP dehydratase FabZ family protein compare
ABIE41_RS10185 -2.8 -19.2 Pls/PosA family non-ribosomal peptide synthetase compare
ABIE41_RS02880 -2.8 -6.9 glycosyltransferase compare
ABIE41_RS05630 -2.7 -1.9 RNA polymerase sigma factor RpoH compare
ABIE41_RS16085 -2.6 -4.2 CatB-related O-acetyltransferase compare
ABIE41_RS08030 -2.6 -1.2 glutaredoxin 3 compare
ABIE41_RS02870 -2.5 -10.1 rhamnan synthesis F family protein compare
ABIE41_RS08675 -2.4 -2.9 histidine kinase compare
ABIE41_RS22775 -2.4 -4.3 tetratricopeptide repeat protein compare
ABIE41_RS23965 -2.4 -4.1 microcin C ABC transporter permease YejB compare
ABIE41_RS14045 -2.3 -1.6 phosphoribosyl-AMP cyclohydrolase compare
ABIE41_RS04910 -2.3 -2.6 DUF1223 domain-containing protein compare
ABIE41_RS15740 -2.2 -3.6 triose-phosphate isomerase compare
ABIE41_RS22480 -2.2 -5.3 superoxide dismutase compare
ABIE41_RS00795 -2.1 -1.6 hypothetical protein compare
ABIE41_RS17745 -2.1 -3.1 endolytic transglycosylase MltG compare
ABIE41_RS22125 -2.1 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
ABIE41_RS10385 -2.1 -2.4 ABC transporter substrate-binding protein compare
ABIE41_RS11480 -2.0 -2.2 outer membrane protein compare
ABIE41_RS00165 -2.0 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABIE41_RS09245 -2.0 -4.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE41_RS04940 -2.0 -3.7 beta-ketoacyl-ACP synthase compare
ABIE41_RS04305 -1.9 -1.1 tRNA-Gly compare
ABIE41_RS08470 -1.9 -3.7 iron response transcriptional regulator IrrA compare
ABIE41_RS16150 -1.9 -2.2 penicillin-binding protein 1A compare
ABIE41_RS12715 -1.9 -3.0 50S ribosomal protein L11 methyltransferase compare
ABIE41_RS12070 -1.8 -1.8 methyl-accepting chemotaxis protein compare
ABIE41_RS08755 -1.8 -3.6 TlpA disulfide reductase family protein compare
ABIE41_RS10390 -1.7 -3.7 ABC transporter permease compare
ABIE41_RS22440 -1.7 -3.2 PAS domain-containing sensor histidine kinase compare
ABIE41_RS22475 -1.7 -0.7 hypothetical protein compare
ABIE41_RS08365 -1.7 -1.6 metal ABC transporter permease compare
ABIE41_RS10400 -1.6 -1.6 ABC transporter ATP-binding protein compare
ABIE41_RS19345 -1.6 -2.2 HNH endonuclease signature motif containing protein compare
ABIE41_RS19130 -1.6 -1.9 single-stranded-DNA-specific exonuclease RecJ compare
ABIE41_RS22170 -1.6 -1.7 AbrB family transcriptional regulator compare
ABIE41_RS07880 -1.6 -1.4 primosomal protein N' compare
ABIE41_RS16185 -1.6 -1.9 type II 3-dehydroquinate dehydratase compare
ABIE41_RS22420 -1.6 -0.8 hypothetical protein compare
ABIE41_RS12880 -1.6 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE41_RS05210 -1.6 -1.1 helix-turn-helix transcriptional regulator compare
ABIE41_RS06120 -1.5 -1.9 YggT family protein compare
ABIE41_RS05815 -1.5 -1.1 GTP-binding protein compare
ABIE41_RS19810 -1.5 -3.2 winged helix DNA-binding protein compare
ABIE41_RS04860 -1.5 -1.0 SDR family NAD(P)-dependent oxidoreductase compare
ABIE41_RS19640 -1.5 -1.3 alpha/beta hydrolase compare
ABIE41_RS22250 -1.5 -2.1 FAD-binding oxidoreductase compare
ABIE41_RS23280 -1.5 -5.3 TIGR01459 family HAD-type hydrolase compare
ABIE41_RS04945 -1.5 -4.1 beta-ketoacyl-ACP synthase compare
ABIE41_RS16010 -1.5 -2.5 amino acid ABC transporter ATP-binding protein compare
ABIE41_RS23600 -1.5 -1.6 pyridoxamine 5'-phosphate oxidase family protein compare
ABIE41_RS04935 -1.5 -3.8 SDR family oxidoreductase compare
ABIE41_RS13900 -1.4 -3.0 DUF938 domain-containing protein compare
ABIE41_RS21870 -1.4 -0.7 hypothetical protein compare
ABIE41_RS22970 -1.4 -4.9 cytochrome c oxidase subunit 3 compare
ABIE41_RS10810 -1.4 -1.5 hypothetical protein compare
ABIE41_RS16035 -1.4 -3.6 amino acid ABC transporter substrate-binding protein compare
ABIE41_RS03965 -1.4 -2.6 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE41_RS15835 -1.4 -4.4 extracellular solute-binding protein compare
ABIE41_RS04280 -1.3 -3.6 SCO family protein compare
ABIE41_RS19275 -1.3 -4.3 COX15/CtaA family protein compare
ABIE41_RS22950 -1.3 -6.0 cytochrome c oxidase subunit I compare
ABIE41_RS05095 -1.3 -7.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE41_RS03815 -1.3 -3.4 phosphoribosyl-ATP diphosphatase compare
ABIE41_RS23970 -1.3 -3.0 ABC transporter permease compare
ABIE41_RS02090 -1.3 -1.6 hypothetical protein compare
ABIE41_RS02715 -1.3 -1.8 nucleotidyltransferase family protein compare
ABIE41_RS02930 -1.3 -3.4 methyltransferase domain-containing protein compare
ABIE41_RS11335 -1.3 -0.8 VUT family protein compare
ABIE41_RS17575 -1.3 -4.2 RIP metalloprotease RseP compare
ABIE41_RS10530 -1.3 -2.0 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABIE41_RS06100 -1.3 -2.2 site-specific tyrosine recombinase XerD compare
ABIE41_RS21625 -1.3 -5.7 methylmalonyl-CoA mutase compare
ABIE41_RS17025 -1.2 -3.1 hypothetical protein compare
ABIE41_RS05165 -1.2 -1.6 hypothetical protein compare
ABIE41_RS10225 -1.2 -1.3 DnaJ C-terminal domain-containing protein compare
ABIE41_RS16050 -1.2 -1.9 glycosyltransferase family 39 protein compare
ABIE41_RS02920 -1.2 -3.1 NAD-dependent epimerase/dehydratase family protein compare
ABIE41_RS23960 -1.2 -5.5 extracellular solute-binding protein compare
ABIE41_RS14380 -1.2 -1.2 GPW/gp25 family protein compare
ABIE41_RS16045 -1.2 -0.9 glycosyltransferase family 2 protein compare
ABIE41_RS15735 -1.2 -1.7 SurA N-terminal domain-containing protein compare
ABIE41_RS07535 -1.2 -1.7 glucose-6-phosphate isomerase compare
ABIE41_RS24040 -1.2 -7.5 EAL domain-containing protein compare
ABIE41_RS11505 -1.2 -0.7 pyridoxamine 5'-phosphate oxidase family protein compare
ABIE41_RS07390 -1.2 -1.6 helix-turn-helix transcriptional regulator compare
ABIE41_RS11190 -1.2 -2.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE41_RS18775 -1.2 -1.3 FAD binding domain-containing protein compare
ABIE41_RS11005 -1.1 -2.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE41_RS17045 -1.1 -1.2 phosphoribosylglycinamide formyltransferase compare
ABIE41_RS22490 -1.1 -0.7 ChbG/HpnK family deacetylase compare
ABIE41_RS23955 -1.1 -3.5 cytochrome c family protein compare
ABIE41_RS06465 -1.1 -2.0 hypothetical protein compare
ABIE41_RS08395 -1.1 -0.9 response regulator compare
ABIE41_RS23005 -1.1 -1.6 YqgE/AlgH family protein compare
ABIE41_RS21205 -1.1 -1.9 hypothetical protein compare
ABIE41_RS05115 -1.1 -1.8 DUF1674 domain-containing protein compare
ABIE41_RS05305 -1.1 -3.1 M48 family metalloprotease compare
ABIE41_RS13965 -1.1 -0.5 hypothetical protein compare
ABIE41_RS20280 -1.1 -2.2 LysR family transcriptional regulator compare
ABIE41_RS09470 -1.1 -1.6 crossover junction endodeoxyribonuclease RuvC compare
ABIE41_RS18700 -1.1 -0.8 hypothetical protein compare
ABIE41_RS22965 -1.1 -4.2 cytochrome c oxidase assembly protein compare
ABIE41_RS01450 -1.1 -3.1 copper chaperone PCu(A)C compare
ABIE41_RS23685 -1.0 -2.2 ABC transporter ATP-binding protein compare
ABIE41_RS17615 -1.0 -1.3 GGDEF domain-containing protein compare
ABIE41_RS17455 -1.0 -1.7 hypothetical protein compare
ABIE41_RS21395 -1.0 -1.2 hypothetical protein compare
ABIE41_RS03130 -1.0 -4.3 glutathione S-transferase family protein compare
ABIE41_RS11760 -1.0 -1.2 rhodanese-like domain-containing protein compare
ABIE41_RS03260 -1.0 -4.7 translation elongation factor 4 compare
ABIE41_RS07465 -1.0 -1.5 helix-turn-helix domain-containing protein compare
ABIE41_RS13350 -1.0 -3.2 flagellar biosynthesis protein FlhB compare
ABIE41_RS03615 -1.0 -2.7 lysylphosphatidylglycerol synthase domain-containing protein compare
ABIE41_RS16805 -1.0 -1.1 CinA family protein compare
ABIE41_RS14760 -1.0 -1.0 rhodanese-like domain-containing protein compare
ABIE41_RS16780 -1.0 -3.6 PAS domain-containing sensor histidine kinase compare
ABIE41_RS11720 -1.0 -1.0 LysE family translocator compare
ABIE41_RS00230 -1.0 -1.5 alpha-ketoglutarate-dependent dioxygenase AlkB compare
ABIE41_RS23820 -1.0 -3.2 phosphoenolpyruvate--protein phosphotransferase compare
ABIE41_RS04920 -1.0 -2.5 zinc-binding dehydrogenase compare
ABIE41_RS11460 -1.0 -1.1 type II toxin-antitoxin system ParD family antitoxin compare
ABIE41_RS10775 -1.0 -1.5 PilZ domain-containing protein compare
ABIE41_RS10395 -1.0 -1.3 ABC transporter permease compare
ABIE41_RS08775 -1.0 -3.5 phosphoglycerate dehydrogenase compare
ABIE41_RS19890 -1.0 -4.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE41_RS20955 -1.0 -1.6 tripartite tricarboxylate transporter TctB family protein compare
ABIE41_RS08535 -1.0 -4.4 histidinol-phosphatase compare
ABIE41_RS10250 -0.9 -3.7 hypothetical protein compare
ABIE41_RS08355 -0.9 -2.9 metal ABC transporter substrate-binding protein compare
ABIE41_RS09945 -0.9 -2.2 putative photosynthetic complex assembly protein PuhE compare
ABIE41_RS24015 -0.9 -5.2 histidinol dehydrogenase compare
ABIE41_RS05000 -0.9 -3.8 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE41_RS19610 -0.9 -2.3 hypothetical protein compare
ABIE41_RS07865 -0.9 -1.3 DUF4337 domain-containing protein compare
ABIE41_RS11130 -0.9 -3.8 hypothetical protein compare
ABIE41_RS09415 -0.9 -1.8 hypothetical protein compare
ABIE41_RS22395 -0.9 -2.0 YcgN family cysteine cluster protein compare
ABIE41_RS06475 -0.9 -4.0 YqaA family protein compare
ABIE41_RS18150 -0.9 -1.3 NUDIX hydrolase compare
ABIE41_RS03860 -0.9 -2.3 NAD-dependent epimerase/dehydratase family protein compare
ABIE41_RS12170 -0.9 -1.2 MOSC domain-containing protein compare
ABIE41_RS01600 -0.9 -1.7 efflux RND transporter periplasmic adaptor subunit compare
ABIE41_RS10165 -0.9 -4.2 aspartate aminotransferase family protein compare
ABIE41_RS02015 -0.9 -2.1 hypothetical protein compare
ABIE41_RS11135 -0.9 -4.9 DUF4159 domain-containing protein compare
ABIE41_RS17780 -0.9 -1.2 DUF2232 domain-containing protein compare
ABIE41_RS08340 -0.9 -3.8 glucan biosynthesis protein G compare
ABIE41_RS02725 -0.9 -4.5 double-strand break repair helicase AddA compare
ABIE41_RS15020 -0.9 -1.5 protein-L-isoaspartate O-methyltransferase compare
ABIE41_RS08565 -0.9 -2.9 glutamate synthase large subunit compare
ABIE41_RS18155 -0.9 -0.8 50S ribosomal protein L33 compare
ABIE41_RS07550 -0.8 -2.6 divergent polysaccharide deacetylase family protein compare
ABIE41_RS10525 -0.8 -2.4 NAD-dependent epimerase compare
ABIE41_RS15705 -0.8 -2.9 exodeoxyribonuclease III compare
ABIE41_RS23160 -0.8 -2.0 phosphoribosylamine--glycine ligase compare
ABIE41_RS23325 -0.8 -1.6 MerR family DNA-binding transcriptional regulator compare
ABIE41_RS14110 -0.8 -2.8 hypothetical protein compare
ABIE41_RS03015 -0.8 -3.4 class I SAM-dependent methyltransferase compare
ABIE41_RS23765 -0.8 -5.1 histidinol-phosphate transaminase compare
ABIE41_RS04800 -0.8 -4.2 Bax inhibitor-1/YccA family protein compare
ABIE41_RS24065 -0.8 -2.8 quinone-dependent dihydroorotate dehydrogenase compare
ABIE41_RS11360 -0.8 -1.5 YbjN domain-containing protein compare
ABIE41_RS09540 -0.8 -1.2 transcriptional regulator FtrA compare
ABIE41_RS13960 -0.8 -2.2 methyl-accepting chemotaxis protein compare
ABIE41_RS22705 -0.8 -2.5 URC4/urg3 family protein compare
ABIE41_RS02745 -0.8 -5.3 PBP1A family penicillin-binding protein compare
ABIE41_RS09840 -0.8 -1.6 alpha/beta fold hydrolase BchO compare
ABIE41_RS08870 -0.8 -1.7 SDR family NAD(P)-dependent oxidoreductase compare
ABIE41_RS23330 -0.8 -1.7 SEL1-like repeat protein compare
ABIE41_RS15160 -0.8 -2.0 AsmA family protein compare
ABIE41_RS09490 -0.8 -1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
ABIE41_RS19185 -0.8 -5.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE41_RS16165 -0.8 -0.7 hypothetical protein compare
ABIE41_RS21230 -0.8 -1.2 thermonuclease family protein compare
ABIE41_RS05840 -0.8 -3.9 glucan biosynthesis protein D compare
ABIE41_RS05100 -0.8 -3.1 heparinase II/III family protein compare
ABIE41_RS10815 -0.8 -2.3 hypothetical protein compare
ABIE41_RS13355 -0.8 -0.9 flagellar biosynthetic protein FliR compare
ABIE41_RS08160 -0.8 -3.3 hypothetical protein compare
ABIE41_RS17230 -0.8 -1.1 aspartate carbamoyltransferase catalytic subunit compare
ABIE41_RS08360 -0.8 -1.0 manganese/iron ABC transporter ATP-binding protein compare
ABIE41_RS16930 -0.8 -2.1 DEAD/DEAH box helicase compare
ABIE41_RS01695 -0.8 -1.3 chemotaxis protein CheW compare
ABIE41_RS15710 -0.8 -2.1 LrgB family protein compare
ABIE41_RS21805 -0.8 -2.3 ABC transporter ATP-binding protein compare
ABIE41_RS04170 -0.8 -0.8 DNA replication/repair protein RecF compare
ABIE41_RS21150 -0.8 -2.1 DMT family transporter compare
ABIE41_RS11145 -0.8 -2.7 MoxR family ATPase compare
ABIE41_RS03035 -0.8 -5.2 class I SAM-dependent methyltransferase compare
ABIE41_RS17975 -0.8 -0.8 response regulator compare
ABIE41_RS19400 -0.8 -2.9 phage GP46 family protein compare


Specific Phenotypes

None in this experiment

For Bosea sp. OAE506 in r2a outgrowth control experiments