Experiment set2IT079 for Agrobacterium fabrum C58

Compare to:

Cellotetraose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -7.9 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1850 -7.9 -5.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1205 -7.7 -5.3 threonine dehydratase compare
Atu0486 -7.6 -5.2 dihydroorotate dehydrogenase compare
Atu0432 -7.5 -7.3 O-succinylhomoserine sulfhydrylase compare
Atu1307 -7.5 -7.3 dihydroorotase compare
Atu1750 -7.4 -7.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -7.4 -11.4 anthranilate synthase component I and II compare
Atu3783 -7.3 -14.1 glutamate synthase subunit beta compare
Atu1308 -7.3 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2709 -7.2 -13.9 3-isopropylmalate dehydratase, large subunit compare
Atu0400 -7.1 -4.9 orotate phosphoribosyltransferase compare
Atu1588 -7.1 -8.4 homoserine dehydrogenase compare
Atu2726 -7.0 -18.2 pyruvate carboxylase compare
Atu0099 -7.0 -9.6 prephenate dehydratase compare
Atu1844 -6.9 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2264 -6.9 -11.5 2-isopropylmalate synthase compare
Atu0298 -6.8 -6.6 orotidine 5 compare
Atu1075 -6.6 -6.5 amidophosphoribosyltransferase compare
Atu1845 -6.6 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu2791 -6.5 -7.8 3-isopropylmalate dehydrogenase compare
Atu0679 -6.5 -6.3 ATP phosphoribosyltransferase compare
Atu1141 -6.4 -7.4 Phosphoribosylglycinamide synthetase compare
Atu0399 -6.4 -4.4 dihydroorotase compare
Atu2036 -6.3 -14.2 acetolactate synthase III, large subunit compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu2718 -6.1 -7.3 homoserine O-succinyltransferase compare
Atu0678 -6.1 -4.2 histidyl-tRNA synthetase compare
Atu3754 -6.1 -9.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3706 -6.0 -10.7 D-3-phosphoglycerate dehydrogenase compare
Atu0537 -6.0 -5.8 histidinol dehydrogenase compare
Atu3784 -5.9 -27.3 glutamate synthase large subunit compare
Atu0017 -5.9 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -5.9 -9.6 anthranilate phosphoribosyltransferase compare
Atu2747 -5.9 -12.3 hypothetical protein compare
Atu1140 -5.7 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0185 -5.7 -8.0 methylglyoxal synthase compare
Atu3885 -5.6 -8.5 inositol monophosphatase compare
Atu1688 -5.5 -7.6 indole-3-glycerol-phosphate synthase compare
Atu0647 -5.5 -6.5 phosphoribosylamine--glycine ligase compare
Atu1686 -5.4 -20.4 peptidyl-prolyl cis-trans isomerse D compare
Atu0184 -5.3 -3.7 glucokinase compare
Atu3755 -5.3 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2040 -5.3 -6.3 phosphoserine phosphatase compare
Atu2650 -5.3 -11.6 glycerol-3-phosphate dehydrogenase compare
Atu2015 -5.3 -16.5 aminotransferase compare
Atu2790 -5.2 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu2548 -5.2 -18.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4075 -5.1 -10.4 glycogen synthase compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3739 -4.8 -3.8 phosphoglycerate kinase compare
Atu3469 -4.8 -3.3 phosphoglyceromutase compare
Atu3482 -4.8 -12.3 pantoate--beta-alanine ligase compare
Atu3483 -4.0 -7.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1589 -3.8 -9.8 aminotransferase, class I compare
Atu0792 -3.8 -11.0 hypothetical protein compare
Atu1446 -3.7 -4.4 two component response regulator compare
Atu0876 -3.7 -3.8 superoxide dismutase compare
Atu0769 -3.6 -3.6 protoheme IX farnesyltransferase compare
Atu0641 -3.6 -5.6 hypothetical protein compare
Atu4098 -3.6 -15.4 quinolinate synthetase compare
Atu1685 -3.5 -2.0 hypothetical protein compare
Atu0598 -3.4 -10.2 phosphogluconate dehydratase compare
Atu3731 -3.1 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu3999 -3.1 -4.1 dithiobiotin synthetase compare
Atu2155 -3.0 -18.5 methionine synthase compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4096 -2.9 -9.5 nicotinate-nucleotide pyrophosphorylase compare
Atu4000 -2.8 -17.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3997 -2.8 -17.5 biotin synthetase compare
Atu0029 -2.7 -7.4 S-adenosylhomocysteine hydrolase compare
Atu0723 -2.7 -2.6 FAD dependent oxidoreductase compare
Atu4097 -2.7 -14.2 L-aspartate oxidase compare
Atu0030 -2.7 -2.6 phosphocarrier protein HPr compare
Atu1464 -2.7 -7.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu0225 -2.6 -1.8 hypothetical protein compare
Atu0031 -2.6 -2.3 PTS system, IIA component compare
Atu1454 -2.6 -10.6 siroheme synthase compare
Atu4375 -2.5 -12.3 hypothetical protein compare
Atu2205 -2.5 -7.9 transcriptional regulator, MarR family compare
Atu1462 -2.5 -13.3 glycine cleavage system protein P2 compare
Atu2569 -2.5 -13.4 thiamine biosynthesis protein compare
Atu3998 -2.5 -13.4 8-amino-7-oxononanoate synthase compare
Atu3290 -2.4 -14.0 phosphomethylpyrimidine kinase compare
Atu1463 -2.4 -7.6 glycine cleavage system component H compare
Atu3289 -2.4 -5.0 thiamine-phosphate pyrophosphorylase compare
Atu1456 -2.3 -9.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1748 -2.3 -11.2 NIFU-like protein compare
Atu2127 -2.2 -9.0 L-carnitine dehydratase compare
Atu2209 -2.2 -4.1 pyrroline-5-carboxylate reductase compare
Atu0434 -2.2 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1455 -2.1 -5.9 hypothetical protein compare
Atu3288 -2.1 -7.6 hydroxyethylthiazole kinase compare
Atu1526 -2.1 -9.7 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu1457 -2.0 -5.1 hypothetical protein compare
Atu1030 -2.0 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1810 -1.9 -2.1 hypothetical protein compare
Atu4001 -1.9 -7.4 3-oxoacyl-ACP synthase compare
Atu0421 -1.9 -2.3 ABC transporter, membrane spanning protein compare
Atu1604 -1.8 -14.5 poly-beta-hydroxybutyrate synthase compare
Atu4374 -1.8 -5.4 hypothetical protein compare
Atu8115 -1.8 -4.2 Hypothetical Protein compare
Atu4373 -1.8 -9.1 LacI family transcriptional regulator compare
Atu0189 -1.8 -3.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1359 -1.7 -1.6 dnaK deletion suppressor protein compare
Atu0346 -1.7 -3.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4711 -1.6 -6.2 two component sensor kinase compare
Atu1891 -1.6 -3.2 cobalamin biosynthesis protein compare
Atu0332 -1.6 -9.1 RNA polymerase sigma-54 factor compare
Atu0141 -1.5 -2.5 cytochrome O ubiquinol oxidase subunit I compare
Atu4370 -1.5 -7.6 sugar ABC transporter ATPase compare
Atu0086 -1.5 -1.1 ribosome-binding factor A compare
Atu1572 -1.4 -6.3 hydrolase compare
Atu2809 -1.4 -7.1 cobalamin biosynthesis protein compare
Atu2684 -1.4 -1.8 hypothetical protein compare
Atu2123 -1.3 -6.1 methylenetetrahydrofolate reductase compare
Atu6189 -1.3 -1.8 protein secretion chaperone compare
Atu4372 -1.3 -8.2 ribose ABC transporter permease compare
Atu2770 -1.3 -6.7 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4371 -1.3 -6.9 sugar ABC transporter permease compare
Atu0188 -1.3 -3.8 ABC transporter, membrane spanning protein (peptide) compare
Atu3908 -1.3 -6.7 GntR family transcriptional regulator compare
Atu4317 -1.3 -4.1 TetR family transcriptional regulator compare
Atu0590 -1.3 -8.0 transcriptional regulator repressor compare
Atu2821 -1.2 -5.4 transcriptional regulator, GntR family compare
Atu1339 -1.2 -3.9 ribonuclease E compare
Atu2801 -1.2 -4.6 precorrin-2 C20 methyltransferase compare
Atu1542 -1.2 -6.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1445 -1.2 -4.1 two component sensor kinase compare
Atu2124 -1.2 -3.4 transcriptional regulator, ArsR family compare
Atu0502 -1.1 -5.0 acetyl-CoA acetyltransferase compare
Atu2795 -1.1 -4.6 cobalamin biosynthetic protein compare
Atu4369 -1.1 -5.6 sugar ABC transporter substrate-binding protein compare
Atu6114 -1.1 -2.3 hypothetical protein compare
Atu0501 -1.1 -7.2 acyl-CoA dehydrogenase compare
Atu2808 -1.1 -5.6 cobyric acid synthase compare
Atu8087 -1.1 -1.1 putative peptidoglycan binding protein compare
Atu1620 -1.1 -7.1 triosephosphate isomerase compare
Atu1372 -1.0 -4.6 hypothetical protein compare
Atu2804 -1.0 -6.4 cobaltochelatase subunit compare
Atu4161 -1.0 -1.4 hypothetical protein compare
Atu2376 -1.0 -0.8 hypothetical protein compare
Atu2803 -1.0 -3.5 Cobalamin biosynthesis associated protein compare
Atu1679 -1.0 -2.2 peptidyl prolyl cis-trans isomerase compare
Atu8191 -1.0 -1.8 hypothetical protein compare
Atu2800 -1.0 -4.1 precorrin-3B C17-methyltransferase compare
Atu2746 -1.0 -2.8 hypothetical protein compare
Atu0601 -0.9 -6.1 oxidoreductase compare
Atu2020 -0.9 -3.4 transcriptional regulator, TetR family compare
Atu5475 -0.9 -1.7 hypothetical protein compare
Atu2017 -0.9 -0.9 hypothetical protein compare
Atu2805 -0.9 -4.4 cobalamin synthesis protein compare
Atu0422 -0.9 -1.9 ABC transporter, membrane spanning protein compare
Atu1774 -0.9 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu4616 -0.9 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu2802 -0.9 -4.7 precorrin-8X methylmutase compare
Atu0361 -0.9 -1.5 transcriptional regulator compare
Atu2662 -0.9 -1.5 acetyltransferase compare
Atu0190 -0.9 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1847 -0.9 -1.8 hypothetical protein compare
Atu3727 -0.9 -2.8 hypothetical protein compare
Atu0354 -0.9 -1.6 ferric uptake regulator compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu2796 -0.8 -4.8 precorrin-4 C11-methyltransferase compare
Atu0503 -0.8 -6.4 enoyl-CoA hydratase compare
Atu1364 -0.8 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4477 -0.8 -4.6 TetR family transcriptional regulator compare
Atu2267 -0.8 -3.4 hypothetical protein compare
Atu1904 -0.8 -4.5 transcriptional regulator compare
Atu3485 -0.8 -5.0 short chain dehydrogenase compare
Atu2807 -0.8 -4.9 cob(I)alamin adenosyltransferase compare
Atu2511 -0.8 -3.5 D-alanine aminotransferase compare
Atu2793 -0.8 -3.5 cobyrinic acid a,c-diamide synthase compare
Atu0291 -0.8 -4.4 hypothetical protein compare
Atu1285 -0.8 -4.5 metal dependent hydrolase compare
Atu5115 -0.8 -1.1 hypothetical protein compare
Atu1182 -0.8 -1.2 hypothetical protein compare
Atu1021 -0.7 -1.5 outer membrane protein compare
Atu0843 -0.7 -5.2 P type cation (metal) transporter, ATPase component compare
Atu0862 -0.7 -3.7 hypothetical protein compare
Atu0837 -0.7 -3.7 transcriptional regulator, MarR family compare
Atu0977 -0.7 -3.2 serine protease DO-like protease compare
Atu1286 -0.7 -3.2 hypothetical protein compare
Atu0153 -0.7 -3.0 transcriptional regulator, Fur family compare
Atu3343 -0.7 -4.7 trehalose utilization-like protein compare
Atu3712 -0.7 -1.3 hypothetical protein compare
Atu0767 -0.7 -3.7 cytochrome c oxidase subunit II compare
Atu0533 -0.7 -2.1 putative inhibitor of septum formation compare
Atu3219 -0.7 -4.6 dihydroxy-acid dehydratase compare
Atu0405 -0.7 -5.2 long-chain-fatty-acid-CoA-ligase compare
Atu3732 -0.6 -3.4 hemolysin compare
Atu1077 -0.6 -2.3 DNA repair protein compare
Atu0593 -0.6 -3.4 ABC transporter, membrane spanning protein compare
Atu4077 -0.6 -3.9 glycogen branching protein compare
Atu0419 -0.6 -1.3 two component sensor kinase compare
Atu1770 -0.6 -4.6 glutamine synthetase compare
Atu4773 -0.6 -0.6 two component response regulator compare
Atu1634 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Cellotetraose in Agrobacterium fabrum C58

For carbon source Cellotetraose across organisms