Experiment set2IT078 for Pseudomonas simiae WCS417

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.0 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.8 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_23805 -6.5 -6.3 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -6.5 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -6.4 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18600 -6.2 -5.5 isopropylmalate isomerase compare
PS417_25720 -6.1 -10.2 anthranilate synthase component II compare
PS417_18585 -6.0 -7.1 3-isopropylmalate dehydrogenase compare
PS417_27705 -5.9 -2.4 amino acid dehydrogenase compare
PS417_23800 -5.6 -13.0 ketol-acid reductoisomerase compare
PS417_25725 -5.6 -20.1 anthranilate synthase component I compare
PS417_04415 -5.5 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02005 -5.3 -14.2 glutamate synthase compare
PS417_18595 -5.1 -6.9 3-isopropylmalate dehydratase compare
PS417_26740 -5.1 -10.4 homoserine acetyltransferase compare
PS417_24745 -5.1 -6.9 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.9 -17.0 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -4.9 -13.5 histidinol dehydrogenase compare
PS417_27795 -4.9 -2.0 orotate phosphoribosyltransferase compare
PS417_26745 -4.5 -6.5 methionine biosynthesis protein MetW compare
PS417_01855 -4.5 -5.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_01850 -4.5 -10.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23545 -4.5 -5.3 gamma-glutamyl kinase compare
PS417_00185 -4.5 -6.1 tryptophan synthase subunit beta compare
PS417_07640 -4.5 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_02000 -4.4 -15.1 glutamate synthase compare
PS417_01570 -4.4 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01565 -4.4 -4.7 imidazole glycerol phosphate synthase compare
PS417_27710 -4.3 -6.9 AsnC family transcriptional regulator conserved
PS417_25715 -4.2 -6.7 anthranilate phosphoribosyltransferase compare
PS417_20160 -4.1 -4.7 cysteine synthase compare
PS417_18530 -4.1 -6.8 O-succinylhomoserine sulfhydrylase compare
PS417_27835 -4.1 -10.0 endoribonuclease compare
PS417_28220 -4.1 -3.9 LysR family transcriptional regulator compare
PS417_25710 -4.1 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_05595 -4.0 -9.3 ornithine carbamoyltransferase compare
PS417_27195 -3.9 -2.1 N-acetylglutamate synthase compare
PS417_00180 -3.8 -4.5 tryptophan synthase subunit alpha compare
PS417_12855 -3.7 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26995 -3.6 -10.4 phosphoserine phosphatase compare
PS417_24155 -3.5 -4.7 ATP-binding protein compare
PS417_26730 -3.3 -1.9 pyrroline-5-carboxylate reductase compare
PS417_08220 -3.2 -1.8 epimerase compare
PS417_26890 -3.2 -6.7 dihydroxy-acid dehydratase compare
PS417_12290 -3.2 -9.2 sulfite reductase compare
PS417_23770 -3.2 -4.2 exodeoxyribonuclease V subunit alpha compare
PS417_02415 -3.1 -7.7 phosphoserine phosphatase compare
PS417_04365 -3.0 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06375 -2.9 -2.0 deoxycytidine triphosphate deaminase compare
PS417_21700 -2.8 -8.2 arginine N-succinyltransferase compare
PS417_05405 -2.8 -13.2 L-alanine and D-alanine permease (from data) conserved
PS417_27435 -2.8 -9.1 polyphosphate kinase compare
PS417_08125 -2.7 -1.8 prephenate dehydratase compare
PS417_01580 -2.6 -1.4 imidazole glycerol phosphate synthase compare
PS417_23110 -2.6 -5.2 2-isopropylmalate synthase compare
PS417_01560 -2.4 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_21705 -2.2 -7.3 arginine N-succinyltransferase compare
PS417_01605 -2.2 -1.7 phosphoglycerate mutase compare
PS417_08245 -2.2 -2.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16465 -2.2 -6.4 sirohydrochlorin ferrochelatase compare
PS417_04585 -2.2 -2.6 hypothetical protein compare
PS417_08230 -2.0 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01210 -2.0 -11.2 hypothetical protein compare
PS417_23995 -1.9 -1.2 preprotein translocase subunit SecG compare
PS417_24835 -1.8 -6.9 hypothetical protein compare
PS417_06165 -1.8 -5.7 thiamine biosynthesis protein ThiF compare
PS417_03925 -1.7 -7.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_08200 -1.7 -3.6 hypothetical protein compare
PS417_26985 -1.7 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22385 -1.7 -9.1 quinolinate synthase A compare
PS417_21480 -1.7 -2.4 23S rRNA pseudouridylate synthase compare
PS417_21125 -1.5 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_22450 -1.5 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_18590 -1.5 -2.8 SAM-dependent methyltransferase compare
PS417_08195 -1.5 -8.6 hypothetical protein compare
PS417_05570 -1.4 -3.8 DeoR faimly transcriptional regulator compare
PS417_07170 -1.4 -2.8 hypothetical protein compare
PS417_18690 -1.4 -4.8 aromatic amino acid aminotransferase compare
PS417_20125 -1.4 -3.9 phosphoribosylglycinamide formyltransferase compare
PS417_21690 -1.3 -6.4 N-succinylarginine dihydrolase compare
PS417_01710 -1.3 -6.3 histidine utilization repressor compare
PS417_20610 -1.3 -2.1 hypothetical protein compare
PS417_19065 -1.3 -1.6 monooxygenase compare
PS417_11485 -1.3 -2.9 AraC family transcriptional regulator compare
PS417_21020 -1.3 -9.5 phosphoenolpyruvate synthase conserved
PS417_07470 -1.3 -1.6 hypothetical protein compare
PS417_20985 -1.2 -2.7 porin compare
PS417_08225 -1.2 -4.1 acetolactate synthase compare
PS417_07595 -1.2 -4.6 PasA protein compare
PS417_26005 -1.2 -7.8 biotin synthase compare
PS417_06175 -1.1 -5.7 cysteine sulfinate desulfinase compare
PS417_06200 -1.1 -4.4 protein-PII uridylyltransferase compare
PS417_26725 -1.1 -3.3 hypothetical protein compare
PS417_12565 -1.1 -2.7 2-dehydro-3-deoxygluconokinase compare
PS417_22115 -1.1 -3.9 transcriptional regulator compare
PS417_24840 -1.1 -2.2 hypothetical protein compare
PS417_21025 -1.0 -6.0 PEP synthetase regulatory protein compare
PS417_18755 -1.0 -2.3 CrtK compare
PS417_08205 -1.0 -2.9 acetyltransferase compare
PS417_23775 -1.0 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_22175 -1.0 -1.9 amino acid transporter LysE compare
PS417_04410 -1.0 -1.2 hypothetical protein compare
PS417_04860 -1.0 -4.9 ATPase compare
PS417_05455 -1.0 -4.2 XRE family transcriptional regulator compare
PS417_20665 -1.0 -4.6 hypothetical protein compare
PS417_25985 -0.9 -2.1 dethiobiotin synthetase compare
PS417_05985 -0.9 -3.7 chemotaxis protein CheY compare
PS417_11845 -0.9 -4.0 RpiR family transcriptional regulator compare
PS417_26540 -0.9 -6.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06645 -0.9 -6.8 RNA polymerase-associated protein RapA compare
PS417_23380 -0.9 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_01635 -0.9 -6.0 nitrogen regulation protein NR(I) compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_13255 -0.9 -2.4 ABC transporter compare
PS417_23375 -0.9 -1.3 cytochrome C oxidase compare
PS417_13800 -0.9 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_03310 -0.9 -5.0 carbonate dehydratase compare
PS417_01640 -0.8 -3.6 histidine kinase compare
PS417_01995 -0.8 -1.1 hypothetical protein compare
PS417_20030 -0.8 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23385 -0.8 -5.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_05165 -0.8 -2.8 cytosol aminopeptidase compare
PS417_10715 -0.8 -2.5 Cro/Cl family transcriptional regulator compare
PS417_15215 -0.8 -2.1 protein activator of alkane oxidation PraA compare
PS417_08025 -0.8 -1.6 acetylornithine aminotransferase compare
PS417_23390 -0.8 -4.8 ubiquinol oxidase subunit II compare
PS417_16045 -0.8 -2.4 acyl-CoA dehydrogenase compare
PS417_13055 -0.8 -2.3 aminotransferase compare
PS417_19805 -0.8 -1.6 flagellar M-ring protein FliF compare
PS417_15305 -0.8 -2.9 type VI secretion protein compare
PS417_23315 -0.8 -1.3 transcriptional regulator compare
PS417_03380 -0.7 -1.3 hypothetical protein compare
PS417_22210 -0.7 -1.5 AraC family transcriptional regulator compare
PS417_02700 -0.7 -2.5 urease accessory protein UreG compare
PS417_27715 -0.7 -2.1 Fe-S oxidoreductase compare
PS417_16715 -0.7 -1.8 DoxX family protein compare
PS417_24630 -0.7 -2.0 ATP-binding protein compare
PS417_26850 -0.7 -0.9 twin-arginine translocation pathway signal protein compare
PS417_17000 -0.7 -2.0 MerR family transcriptional regulator compare
PS417_13490 -0.7 -1.2 hypothetical protein compare
PS417_05140 -0.7 -1.6 dipicolinate synthase compare
PS417_26695 -0.7 -1.1 uracil phosphoribosyltransferase compare
PS417_24260 -0.7 -3.3 glutamate dehydrogenase compare
PS417_00510 -0.7 -1.1 membrane protein compare
PS417_21320 -0.7 -1.4 transcriptional regulator compare
PS417_23900 -0.7 -4.5 poly(A) polymerase compare
PS417_21630 -0.7 -1.4 magnesium transporter compare
PS417_08685 -0.7 -1.6 flagellar hook-length control protein FliK compare
PS417_11925 -0.7 -1.8 hypothetical protein compare
PS417_05025 -0.7 -1.7 maleylacetoacetate isomerase compare
PS417_25990 -0.7 -3.3 malonyl-CoA O-methyltransferase compare
PS417_23405 -0.7 -2.5 transcriptional regulator compare
PS417_05200 -0.7 -2.6 DNA recombination protein RecO compare
PS417_03145 -0.7 -1.6 acetyl-CoA acetyltransferase compare
PS417_04800 -0.7 -1.4 alginate O-acetyltransferase compare
PS417_22570 -0.7 -0.9 H-NS histone compare
PS417_04305 -0.7 -1.1 aspartate ammonia-lyase compare
PS417_10490 -0.7 -2.0 delta-aminolevulinic acid dehydratase compare
PS417_02225 -0.7 -1.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27475 -0.7 -1.0 membrane protein compare
PS417_16065 -0.7 -1.6 3-phytase compare
PS417_09470 -0.7 -1.1 hypothetical protein compare
PS417_14455 -0.6 -2.4 polyketide cyclase compare
PS417_12870 -0.6 -1.5 enoyl-CoA hydratase compare
PS417_06635 -0.6 -1.2 ferredoxin compare
PS417_03260 -0.6 -1.6 5S ribosomal RNA compare
PS417_05650 -0.6 -3.0 leucyl-tRNA synthetase compare
PS417_13445 -0.6 -1.1 D-aminopeptidase compare
PS417_24500 -0.6 -2.9 DEAD/DEAH box helicase compare
PS417_12220 -0.6 -2.7 hydroxyacylglutathione hydrolase compare
PS417_00295 -0.6 -4.3 hypothetical protein compare
PS417_16945 -0.6 -1.6 LuxR family transcriptional regulator compare
PS417_08580 -0.6 -3.2 histidine kinase compare
PS417_23330 -0.6 -2.1 hypothetical protein compare
PS417_16005 -0.6 -2.6 ATPase compare
PS417_22825 -0.6 -3.3 hypothetical protein compare
PS417_07165 -0.6 -2.9 dihydrodipicolinate synthase compare
PS417_08130 -0.6 -1.2 aspartate aminotransferase compare
PS417_27870 -0.6 -2.3 ATP-dependent DNA helicase RecG compare
PS417_15750 -0.6 -1.5 protease compare
PS417_03705 -0.6 -1.0 2-alkenal reductase compare
PS417_25270 -0.6 -2.4 NrdR family transcriptional regulator compare
PS417_04185 -0.6 -1.7 hypothetical protein compare
PS417_21000 -0.6 -1.2 CrfX protein compare
PS417_13710 -0.6 -1.9 hypothetical protein compare
PS417_02575 -0.6 -1.3 membrane protein compare
PS417_12655 -0.6 -2.3 methionine aminopeptidase compare
PS417_01620 -0.6 -1.7 preprotein translocase subunit SecB compare
PS417_06945 -0.6 -0.8 membrane protein compare
PS417_05820 -0.6 -2.0 recombinase RecX compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_12355 -0.6 -1.5 magnesium chelatase compare
PS417_00345 -0.6 -1.7 copper-binding protein compare
PS417_14655 -0.6 -0.9 lysine transporter LysE compare
PS417_12090 -0.6 -1.5 hypothetical protein compare
PS417_24705 -0.6 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_08945 -0.6 -3.6 heat shock protein 90 compare
PS417_28080 -0.6 -4.5 phosphate ABC transporter permease compare
PS417_04050 -0.6 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_24125 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Alanine in Pseudomonas simiae WCS417

For carbon source L-Alanine across organisms