Experiment set2IT078 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

D-Xylose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3872 +1.3 1.9 SnoaL-like polyketide cyclase. compare
Echvi_4611 +1.2 2.6 hypothetical protein compare
Echvi_3960 +1.0 2.4 Histone H1-like protein Hc1. compare
Echvi_2193 +1.0 7.5 Transcriptional regulators compare
Echvi_1020 +1.0 1.8 hypothetical protein compare
Echvi_2222 +0.9 3.8 hypothetical protein compare
Echvi_3347 +0.9 1.2 hypothetical protein compare
Echvi_4081 +0.9 2.1 Malic enzyme compare
Echvi_2238 +0.8 2.8 hypothetical protein compare
Echvi_1662 +0.8 1.8 hypothetical protein compare
Echvi_3824 +0.8 1.9 hypothetical protein compare
Echvi_3075 +0.8 2.1 hypothetical protein compare
Echvi_0025 +0.8 1.3 DNA repair proteins compare
Echvi_3300 +0.7 2.8 hypothetical protein compare
Echvi_4595 +0.7 1.3 hypothetical protein compare
Echvi_3142 +0.7 1.4 hypothetical protein compare
Echvi_1930 +0.7 2.0 DNA repair proteins compare
Echvi_2266 +0.7 6.3 Alanine dehydrogenase compare
Echvi_2322 +0.7 3.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_4640 +0.7 0.8 hypothetical protein compare
Echvi_0796 +0.7 1.6 hypothetical protein compare
Echvi_4025 +0.7 1.2 hypothetical protein compare
Echvi_3595 +0.7 2.3 conserved hypothetical phage tail region protein compare
Echvi_0260 +0.7 2.4 Protein of unknown function (DUF3467). compare
Echvi_0894 +0.7 1.7 Protein of unknown function (DUF3127). compare
Echvi_2937 +0.6 1.2 Uncharacterized conserved protein compare
Echvi_0008 +0.6 2.6 hypothetical protein compare
Echvi_2402 +0.6 1.2 hypothetical protein compare
Echvi_2928 +0.6 2.7 Peroxiredoxin compare
Echvi_3594 +0.6 1.8 hypothetical protein compare
Echvi_1201 +0.6 2.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_0006 +0.6 2.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Echvi_0720 +0.6 1.9 hypothetical protein compare
Echvi_3600 +0.6 4.7 Superfamily II DNA and RNA helicases compare
Echvi_3922 +0.6 2.0 hypothetical protein compare
Echvi_2219 +0.6 1.2 ADP-ribose pyrophosphatase compare
Echvi_2226 +0.6 2.0 hypothetical protein compare
Echvi_2428 +0.6 1.0 iojap-like ribosome-associated protein compare
Echvi_2830 +0.6 2.1 TIGR00255 family protein compare
Echvi_0007 +0.6 1.9 Cytochrome c, mono- and diheme variants compare
Echvi_1900 +0.6 1.5 nitrite reductase [NAD(P)H], small subunit compare
Echvi_4527 +0.6 1.8 Plasmid stabilization system protein compare
Echvi_4536 +0.6 3.3 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Echvi_0343 +0.6 2.7 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_0718 +0.5 1.1 segregation and condensation protein B compare
Echvi_4357 +0.5 1.8 Protein of unknown function (DUF3714). compare
Echvi_4573 +0.5 4.3 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_4383 +0.5 0.6 hypothetical protein compare
Echvi_4055 +0.5 1.2 Uncharacterized protein involved in copper resistance compare
Echvi_1881 +0.5 0.9 ADP-ribose pyrophosphatase compare
Echvi_3717 +0.5 3.7 Outer membrane protein/protective antigen OMA87 compare
Echvi_0019 +0.5 2.6 hypothetical protein compare
Echvi_4500 +0.5 1.9 Predicted membrane protein compare
Echvi_0904 +0.5 3.5 conserved hypothetical protein compare
Echvi_1419 +0.5 2.1 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_1605 +0.5 3.0 Mg-chelatase subunit ChlI compare
Echvi_3803 +0.5 3.4 Response regulator of the LytR/AlgR family compare
Echvi_0186 +0.5 0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
Echvi_1603 +0.5 1.2 hypothetical protein compare
Echvi_3467 +0.5 1.1 hypothetical protein compare
Echvi_3339 +0.5 1.1 hypothetical protein compare
Echvi_3864 +0.5 3.2 Glycosyltransferase compare
Echvi_1939 +0.5 1.3 Bacteroides conjugative transposon TraN protein compare
Echvi_3998 +0.5 1.0 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Echvi_2444 +0.5 3.0 Predicted cysteine protease (OTU family) compare
Echvi_2348 +0.5 1.8 hypothetical protein compare
Echvi_2389 +0.5 2.0 hypothetical protein compare
Echvi_4296 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_2084 +0.5 4.1 Uncharacterized protein conserved in bacteria compare
Echvi_4358 +0.4 1.7 Bacteroides conjugative transposon TraK protein compare
Echvi_4665 +0.4 2.0 hypothetical protein compare
Echvi_4465 +0.4 2.2 hypothetical protein compare
Echvi_4323 +0.4 2.5 Fe2+-dicitrate sensor, membrane component compare
Echvi_3950 +0.4 2.9 Glycine/D-amino acid oxidases (deaminating) compare
Echvi_1119 +0.4 1.4 hypothetical protein compare
Echvi_2258 +0.4 0.8 hypothetical protein compare
Echvi_2953 +0.4 1.1 Uncharacterized conserved protein compare
Echvi_1356 +0.4 1.0 hypothetical protein compare
Echvi_3805 +0.4 1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Echvi_2310 +0.4 1.8 conserved hypothetical protein YidD compare
Echvi_0582 +0.4 1.6 hypothetical protein compare
Echvi_0215 +0.4 1.9 phosphomethylpyrimidine kinase compare
Echvi_0014 +0.4 3.9 PAS domain S-box compare
Echvi_3196 +0.4 1.7 Copper chaperone compare
Echvi_0557 +0.4 1.8 Molecular chaperone (small heat shock protein) compare
Echvi_1991 +0.4 1.6 Predicted methylated DNA-protein cysteine methyltransferase compare
Echvi_0144 +0.4 0.7 TIGR00159 family protein compare
Echvi_0096 +0.4 0.6 Predicted pyrophosphatase compare
Echvi_4334 +0.4 1.3 hypothetical protein compare
Echvi_1283 +0.4 1.4 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_0134 +0.4 1.5 hypothetical protein compare
Echvi_2687 +0.4 1.8 Uncharacterized protein conserved in bacteria (DUF2141). compare
Echvi_4298 +0.4 2.2 Predicted lactoylglutathione lyase compare
Echvi_1406 +0.4 0.5 hypothetical protein compare
Echvi_2683 +0.4 0.8 hypothetical protein compare
Echvi_0293 +0.4 1.1 hypothetical protein compare
Echvi_4561 +0.4 1.0 hypothetical protein compare
Echvi_1389 +0.4 1.8 hypothetical protein compare
Echvi_2211 +0.4 1.9 hypothetical protein compare
Echvi_4020 +0.4 1.8 hypothetical protein compare
Echvi_2594 +0.4 1.5 methyltransferase, FkbM family compare
Echvi_1601 +0.4 1.4 hypothetical protein compare
Echvi_4459 +0.4 1.1 Protein of unknown function (DUF3703). compare
Echvi_2157 +0.4 1.1 hypothetical protein compare
Echvi_1408 +0.4 2.2 DNA adenine methylase (dam) compare
Echvi_1272 +0.4 1.4 Protein of unknown function (DUF2442). compare
Echvi_4327 +0.4 1.5 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_2936 +0.4 1.2 Predicted transcriptional regulator compare
Echvi_3527 +0.4 1.7 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_3519 +0.4 1.9 hypothetical protein compare
Echvi_3381 +0.4 3.5 Pregnancy-associated plasma protein-A. compare
Echvi_1646 +0.4 1.8 hypothetical protein compare
Echvi_3200 +0.4 1.9 Site-specific recombinase XerD compare
Echvi_0584 +0.4 2.2 peptide chain release factor 3 compare
Echvi_2761 +0.4 1.6 hypothetical protein compare
Echvi_1115 +0.4 1.5 hypothetical protein compare
Echvi_3973 +0.4 1.7 hypothetical protein compare
Echvi_3291 +0.4 2.1 Predicted membrane protein compare
Echvi_1516 +0.4 1.2 hypothetical protein compare
Echvi_2787 +0.4 1.5 HopJ type III effector protein. compare
Echvi_1030 +0.4 1.8 secondary thiamine-phosphate synthase enzyme compare
Echvi_2401 +0.4 0.5 hypothetical protein compare
Echvi_3799 +0.4 2.6 Nucleoside-diphosphate-sugar epimerases compare
Echvi_3814 +0.4 1.6 Uncharacterized conserved protein compare
Echvi_2350 +0.4 1.8 dinuclear metal center protein, YbgI/SA1388 family compare
Echvi_3472 +0.4 2.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_0374 +0.4 1.9 Predicted membrane protein compare
Echvi_0450 +0.4 1.7 hypothetical protein compare
Echvi_3030 +0.4 2.1 methionine aminopeptidase, type I compare
Echvi_2466 +0.4 1.4 Glutathione peroxidase compare
Echvi_0431 +0.4 1.3 hypothetical protein compare
Echvi_2407 +0.4 1.4 Protein of unknown function (DUF3050). compare
Echvi_3088 +0.4 1.8 Lactoylglutathione lyase and related lyases compare
Echvi_2355 +0.4 1.7 Predicted membrane protein compare
Echvi_1078 +0.4 1.4 Protein-L-isoaspartate carboxylmethyltransferase compare
Echvi_4144 +0.4 1.2 hypothetical protein compare
Echvi_3550 +0.4 2.4 Glycosyltransferase compare
Echvi_1308 +0.4 1.6 hypothetical protein compare
Echvi_4364 +0.3 1.3 hypothetical protein compare
Echvi_3853 +0.3 0.5 Predicted transcriptional regulators compare
Echvi_3748 +0.3 2.5 Glycosyl hydrolase family 9./N-terminal ig-like domain of cellulase. compare
Echvi_0660 +0.3 1.6 Uncharacterized conserved protein compare
Echvi_0599 +0.3 1.0 hypothetical protein compare
Echvi_1490 +0.3 2.9 alanine racemase compare
Echvi_2824 +0.3 2.8 hypothetical protein compare
Echvi_2734 +0.3 1.7 hypothetical protein compare
Echvi_3292 +0.3 0.4 hypothetical protein compare
Echvi_2431 +0.3 2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_4411 +0.3 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_4119 +0.3 1.3 hypothetical protein compare
Echvi_0888 +0.3 2.6 Ion channel. compare
Echvi_1275 +0.3 2.4 transporter, SSS family compare
Echvi_4396 +0.3 2.3 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Echvi_3934 +0.3 0.6 hypothetical protein compare
Echvi_3790 +0.3 2.0 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family compare
Echvi_0590 +0.3 0.6 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
Echvi_3433 +0.3 2.2 Activator of Hsp90 ATPase homolog 1-like protein. compare
Echvi_2237 +0.3 1.6 hypothetical protein compare
Echvi_2608 +0.3 2.3 hypothetical protein compare
Echvi_3045 +0.3 1.6 hypothetical protein compare
Echvi_0482 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Echvi_1942 +0.3 1.4 Bacteroides conjugative transposon TraK protein compare
Echvi_2405 +0.3 2.5 Periplasmic protease compare
Echvi_2893 +0.3 1.8 hypothetical protein compare
Echvi_2767 +0.3 2.2 Domain of unknown function (DUF1793). compare
Echvi_4210 +0.3 2.4 RND family efflux transporter, MFP subunit compare
Echvi_1538 +0.3 2.4 hypothetical protein compare
Echvi_1068 +0.3 1.6 Transcriptional regulators compare
Echvi_1841 +0.3 1.2 predicted cytochrome c component of periplasmic glycoside 3-dehydrogenase (EC 1.1.99.13) (from data) compare
Echvi_1144 +0.3 2.2 Glutamate decarboxylase and related PLP-dependent proteins compare
Echvi_2942 +0.3 1.8 AraC-type DNA-binding domain-containing proteins compare
Echvi_1238 +0.3 1.6 inosine/xanthosine triphosphatase compare
Echvi_4227 +0.3 1.4 SusD family. compare
Echvi_1584 +0.3 2.0 Transcriptional regulators compare
Echvi_2314 +0.3 1.4 beta-ketoacyl-acyl-carrier-protein synthase II compare
Echvi_3229 +0.3 1.1 hypothetical protein compare
Echvi_1052 +0.3 1.9 hypothetical protein compare
Echvi_4140 +0.3 1.6 Copper chaperone compare
Echvi_1854 +0.3 0.7 tRNA compare
Echvi_1223 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_3046 +0.3 1.4 hypothetical protein compare
Echvi_4639 +0.3 2.8 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_4594 +0.3 1.8 Xaa-Pro aminopeptidase compare
Echvi_2296 +0.3 2.3 Arabinose efflux permease compare
Echvi_2611 +0.3 1.9 hypothetical protein compare
Echvi_1062 +0.3 2.2 hypothetical protein compare
Echvi_0887 +0.3 2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Echvi_4047 +0.3 0.6 hypothetical protein compare
Echvi_4021 +0.3 1.4 Cytochrome c peroxidase compare
Echvi_2821 +0.3 2.0 hypothetical protein compare
Echvi_1302 +0.3 0.9 Predicted transcriptional regulators compare
Echvi_3896 +0.3 1.0 PAP2 superfamily. compare
Echvi_0351 +0.3 1.3 Predicted transcription factor, homolog of eukaryotic MBF1 compare
Echvi_1809 +0.3 0.6 tyrosine recombinase XerD compare
Echvi_2908 +0.3 1.4 succinyl-CoA synthetase, beta subunit compare
Echvi_0586 +0.3 0.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Echvi_3515 +0.3 1.4 Bacterial mobilisation protein (MobC). compare
Echvi_2829 +0.3 2.8 hypothetical protein compare
Echvi_0830 +0.3 2.3 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
Echvi_3786 +0.3 1.9 nucleotide sugar dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Xylose in Echinicola vietnamensis KMM 6221, DSM 17526

For carbon source D-Xylose across organisms