Experiment set2IT077 for Pseudomonas fluorescens GW456-L13

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
PfGW456L13_2046 -5.1 -8.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
PfGW456L13_1233 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_3940 -4.6 -13.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
PfGW456L13_1221 -4.4 -14.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
PfGW456L13_644 -4.4 -10.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_1222 -4.3 -7.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
PfGW456L13_1749 -4.2 -5.7 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_1217 -4.0 -19.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
PfGW456L13_275 -4.0 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_1363 -3.9 -8.4 Rare lipoprotein A precursor compare
PfGW456L13_565 -3.7 -7.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_4859 -3.7 -5.0 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_913 -3.6 -10.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_793 -3.6 -4.2 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_566 -3.5 -9.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_1735 -3.4 -4.0 Glycerol uptake facilitator protein compare
PfGW456L13_4026 -3.4 -3.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
PfGW456L13_276 -3.4 -2.1 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_854 -3.3 -4.5 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_4165 -3.3 -4.9 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_50 -3.3 -11.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_656 -3.2 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1220 -2.9 -7.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
PfGW456L13_1739 -2.9 -14.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
PfGW456L13_1603 -2.8 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_2103 -2.8 -7.3 Phosphate:acyl-ACP acyltransferase PlsX compare
PfGW456L13_420 -2.8 -2.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
PfGW456L13_1198 -2.6 -7.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
PfGW456L13_1524 -2.5 -6.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
PfGW456L13_1219 -2.4 -2.4 hypothetical protein compare
PfGW456L13_4671 -2.4 -12.1 Transcriptional regulator, Cro/CI family compare
PfGW456L13_5008 -2.3 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_5082 -2.3 -6.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
PfGW456L13_172 -2.2 -10.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_355 -2.1 -5.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_1863 -2.0 -8.2 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_1615 -2.0 -2.4 Probable transmembrane protein compare
PfGW456L13_5150 -2.0 -4.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_943 -2.0 -5.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_2623 -1.9 -2.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_2032 -1.9 -4.6 Cysteine synthase B (EC 2.5.1.47) compare
PfGW456L13_845 -1.8 -7.0 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_2631 -1.7 -3.7 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
PfGW456L13_1574 -1.7 -4.1 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_3398 -1.7 -4.5 Transcriptional regulator, TetR family compare
PfGW456L13_1580 -1.7 -7.2 FIG140336: TPR domain protein compare
PfGW456L13_1655 -1.7 -2.4 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_1845 -1.6 -4.4 Cold shock protein CspC compare
PfGW456L13_2436 -1.6 -4.2 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_1521 -1.6 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
PfGW456L13_2620 -1.5 -1.6 Glutamine amidotransferase class-I (EC 6.3.5.2) compare
PfGW456L13_4960 -1.5 -4.5 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) compare
PfGW456L13_4842 -1.5 -2.8 Translation elongation factor LepA compare
PfGW456L13_4961 -1.4 -6.3 Fumarylacetoacetase (EC 3.7.1.2) compare
PfGW456L13_151 -1.4 -4.1 HflC protein compare
PfGW456L13_2594 -1.4 -7.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
PfGW456L13_2651 -1.4 -4.4 Cell division protein FtsK compare
PfGW456L13_1838 -1.4 -4.9 Sensory box histidine kinase compare
PfGW456L13_2632 -1.3 -3.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_3894 -1.3 -2.4 Integration host factor alpha subunit compare
PfGW456L13_5006 -1.3 -2.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_1029 -1.3 -1.7 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
PfGW456L13_5060 -1.3 -4.5 Peptide chain release factor 3 compare
PfGW456L13_3052 -1.3 -2.0 Response regulator compare
PfGW456L13_953 -1.3 -8.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_4125 -1.3 -2.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
PfGW456L13_4882 -1.3 -2.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
PfGW456L13_4517 -1.2 -8.2 L-aspartate oxidase (EC 1.4.3.16) compare
PfGW456L13_2237 -1.2 -1.9 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_66 -1.2 -1.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
PfGW456L13_1852 -1.2 -4.5 Holliday junction DNA helicase RuvA compare
PfGW456L13_2556 -1.2 -2.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
PfGW456L13_62 -1.2 -1.6 hypothetical protein compare
PfGW456L13_1525 -1.2 -6.6 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
PfGW456L13_4207 -1.2 -5.0 Periplasmic protease compare
PfGW456L13_1368 -1.2 -3.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_812 -1.2 -2.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
PfGW456L13_4038 -1.2 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_4088 -1.2 -2.7 Transcriptional regulator, GntR family compare
PfGW456L13_1205 -1.2 -5.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
PfGW456L13_2707 -1.2 -1.5 FIG00953208: hypothetical protein compare
PfGW456L13_1834 -1.1 -5.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_1050 -1.1 -5.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
PfGW456L13_1044 -1.1 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
PfGW456L13_2230 -1.1 -5.1 Cys regulon transcriptional activator CysB compare
PfGW456L13_3179 -1.1 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_68 -1.1 -2.1 hypothetical protein compare
PfGW456L13_5046 -1.1 -4.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
PfGW456L13_3808 -1.1 -1.3 Predicted transcriptional regulator of NADH dehydrogenase, Rrf2 family compare
PfGW456L13_5005 -1.1 -3.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_5018 -1.1 -4.5 Phosphocarrier protein, nitrogen regulation associated compare
PfGW456L13_875 -1.0 -4.0 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_4008 -1.0 -2.2 hypothetical protein compare
PfGW456L13_2551 -1.0 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_1147 -1.0 -6.5 Biotin synthase (EC 2.8.1.6) compare
PfGW456L13_1612 -1.0 -2.7 FIG00956396: hypothetical protein compare
PfGW456L13_2908 -1.0 -2.6 hypothetical protein compare
PfGW456L13_1148 -1.0 -7.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
PfGW456L13_118 -1.0 -2.8 hypothetical protein compare
PfGW456L13_742 -1.0 -3.5 Aspartate ammonia-lyase (EC 4.3.1.1) compare
PfGW456L13_2552 -1.0 -4.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_4254 -1.0 -4.4 FIG00955360: hypothetical protein compare
PfGW456L13_329 -1.0 -2.6 Histidine utilization repressor compare
PfGW456L13_1936 -1.0 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PfGW456L13_4118 -1.0 -5.5 Methylisocitrate lyase (EC 4.1.3.30) compare
PfGW456L13_283 -1.0 -5.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
PfGW456L13_4012 -1.0 -1.9 VacJ-like lipoprotein precursor compare
PfGW456L13_5067 -1.0 -5.3 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_3999 -0.9 -4.0 N-acetylmannosaminyltransferase (EC 2.4.1.187) compare
PfGW456L13_2189 -0.9 -5.1 UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase compare
PfGW456L13_2314 -0.9 -2.0 ABC-type proline/glycine betaine transport systems, ATPase components compare
PfGW456L13_1151 -0.9 -4.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
PfGW456L13_1520 -0.9 -3.3 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
PfGW456L13_1150 -0.9 -5.9 Biotin synthesis protein BioC compare
PfGW456L13_1284 -0.9 -2.1 Putative transport protein compare
PfGW456L13_4883 -0.9 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
PfGW456L13_4836 -0.9 -5.5 Transglycosylase, Slt family compare
PfGW456L13_2699 -0.9 -2.3 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_3540 -0.9 -4.4 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
PfGW456L13_4668 -0.9 -3.4 RecA protein compare
PfGW456L13_3051 -0.9 -3.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
PfGW456L13_4424 -0.9 -3.6 FIG00953416: hypothetical protein compare
PfGW456L13_2327 -0.9 -2.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_2984 -0.9 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
PfGW456L13_1160 -0.9 -3.7 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
PfGW456L13_3309 -0.9 -1.8 Glutathione S-transferase family protein compare
PfGW456L13_5048 -0.8 -1.9 Dna binding response regulator PrrA (RegA) compare
PfGW456L13_1861 -0.8 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
PfGW456L13_4042 -0.8 -2.2 FIG00953628: hypothetical protein compare
PfGW456L13_2656 -0.8 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
PfGW456L13_352 -0.8 -2.4 FIG136845: Rhodanese-related sulfurtransferase compare
PfGW456L13_4618 -0.8 -2.3 Outer membrane lipoprotein compare
PfGW456L13_728 -0.8 -5.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
PfGW456L13_4451 -0.8 -3.6 ATP-dependent RNA helicase SrmB compare
PfGW456L13_744 -0.8 -2.2 hypothetical protein compare
PfGW456L13_1850 -0.8 -3.8 FIG000859: hypothetical protein YebC compare
PfGW456L13_1020 -0.8 -3.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_498 -0.8 -1.0 hypothetical protein compare
PfGW456L13_2589 -0.8 -3.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
PfGW456L13_842 -0.8 -2.9 Tyrosine recombinase XerC compare
PfGW456L13_4361 -0.8 -2.0 Flagellin protein FlaG compare
PfGW456L13_727 -0.7 -4.1 LysR family transcriptional regulator PA5437 compare
PfGW456L13_2982 -0.7 -3.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) compare
PfGW456L13_591 -0.7 -3.3 Cytochrome c4 compare
PfGW456L13_2843 -0.7 -4.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
PfGW456L13_1010 -0.7 -2.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
PfGW456L13_2588 -0.7 -5.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
PfGW456L13_3905 -0.7 -1.6 hypothetical protein compare
PfGW456L13_3544 -0.7 -4.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
PfGW456L13_1976 -0.7 -2.2 Putative GTPases (G3E family) compare
PfGW456L13_2191 -0.7 -5.0 nucleotide sugar epimerase/dehydratase WbpM compare
PfGW456L13_5086 -0.7 -1.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
PfGW456L13_2553 -0.7 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_4679 -0.7 -2.8 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
PfGW456L13_3541 -0.7 -5.0 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PfGW456L13_751 -0.7 -1.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
PfGW456L13_2682 -0.7 -2.4 Gll0911 protein compare
PfGW456L13_4258 -0.7 -4.6 Chaperone protein HtpG compare
PfGW456L13_4898 -0.7 -0.9 Inner membrane protein compare
PfGW456L13_2268 -0.7 -2.0 Thiol-disulfide isomerase and thioredoxins compare
PfGW456L13_282 -0.7 -5.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
PfGW456L13_2035 -0.7 -4.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
PfGW456L13_4253 -0.7 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
PfGW456L13_2176 -0.7 -3.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_5057 -0.7 -3.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
PfGW456L13_4015 -0.7 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
PfGW456L13_89 -0.7 -3.0 Tabtoxin resistance protein compare
PfGW456L13_4641 -0.7 -0.7 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
PfGW456L13_3321 -0.7 -1.6 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
PfGW456L13_844 -0.7 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
PfGW456L13_4610 -0.7 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
PfGW456L13_2163 -0.7 -3.9 Rhodanese domain protein UPF0176 compare
PfGW456L13_1382 -0.7 -3.1 FOG: TPR repeat, SEL1 subfamily compare
PfGW456L13_3181 -0.7 -1.5 Organic hydroperoxide resistance protein compare
PfGW456L13_1636 -0.7 -4.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
PfGW456L13_2250 -0.7 -4.2 Probable protease htpX homolog (EC 3.4.24.-) compare
PfGW456L13_4582 -0.7 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
PfGW456L13_2496 -0.7 -1.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
PfGW456L13_4545 -0.7 -1.3 Integral membrane protein compare
PfGW456L13_729 -0.7 -4.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
PfGW456L13_150 -0.7 -1.6 hypothetical protein compare
PfGW456L13_1537 -0.6 -2.2 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) compare
PfGW456L13_351 -0.6 -2.0 Glutaredoxin 3 (Grx3) compare
PfGW456L13_3755 -0.6 -1.8 Amidase (EC 3.5.1.4) compare
PfGW456L13_5145 -0.6 -3.7 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) compare
PfGW456L13_3107 -0.6 -2.2 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) compare
PfGW456L13_1763 -0.6 -2.6 FxsA protein compare
PfGW456L13_4506 -0.6 -3.1 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
PfGW456L13_1721 -0.6 -3.4 Tyrosine recombinase XerD compare
PfGW456L13_2776 -0.6 -1.1 Phage protein compare
PfGW456L13_4009 -0.6 -4.1 Transaldolase (EC 2.2.1.2) compare
PfGW456L13_4155 -0.6 -2.6 Spermidine synthase (EC 2.5.1.16) compare
PfGW456L13_3517 -0.6 -2.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
PfGW456L13_843 -0.6 -1.5 Protein of unknown function DUF484 compare
PfGW456L13_332 -0.6 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
PfGW456L13_3947 -0.6 -2.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
PfGW456L13_973 -0.6 -3.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
PfGW456L13_2759 -0.6 -2.4 hypothetical protein compare
PfGW456L13_144 -0.6 -2.2 3'-to-5' exoribonuclease RNase R compare
PfGW456L13_2012 -0.6 -4.1 Sensor protein PhoQ (EC 2.7.13.3) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens GW456-L13 in carbon source experiments

For carbon source casamino acids across organisms