Experiment set2IT077 for Agrobacterium fabrum C58

Compare to:

palatinose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.8 -7.6 anthranilate phosphoribosyltransferase compare
Atu0038 -7.8 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -7.4 -6.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -7.2 -13.8 anthranilate synthase component I and II compare
Atu3706 -7.0 -4.8 D-3-phosphoglycerate dehydrogenase compare
Atu1205 -6.8 -11.4 threonine dehydratase compare
Atu2264 -6.7 -11.2 2-isopropylmalate synthase compare
Atu0099 -6.7 -9.2 prephenate dehydratase compare
Atu2036 -6.6 -13.4 acetolactate synthase III, large subunit compare
Atu2726 -6.5 -21.5 pyruvate carboxylase compare
Atu0679 -6.4 -6.3 ATP phosphoribosyltransferase compare
Atu2709 -6.4 -18.6 3-isopropylmalate dehydratase, large subunit compare
Atu2791 -6.4 -8.7 3-isopropylmalate dehydrogenase compare
Atu3754 -6.4 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu3343 -6.3 -11.3 trehalose utilization-like protein conserved
Atu0486 -6.2 -7.4 dihydroorotate dehydrogenase compare
Atu1308 -6.2 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0537 -6.1 -4.2 histidinol dehydrogenase compare
Atu3783 -6.1 -17.8 glutamate synthase subunit beta compare
Atu1140 -6.1 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -5.9 -8.1 amidophosphoribosyltransferase compare
Atu0432 -5.8 -9.8 O-succinylhomoserine sulfhydrylase compare
Atu1588 -5.8 -10.5 homoserine dehydrogenase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1141 -5.8 -4.8 Phosphoribosylglycinamide synthetase compare
Atu0678 -5.7 -5.6 histidyl-tRNA synthetase compare
Atu1688 -5.7 -6.8 indole-3-glycerol-phosphate synthase compare
Atu1307 -5.7 -7.8 dihydroorotase compare
Atu2747 -5.5 -15.6 hypothetical protein compare
Atu2718 -5.5 -8.4 homoserine O-succinyltransferase compare
Atu3340 -5.5 -10.7 trehalose/maltose ABC transporter permease conserved
Atu3342 -5.5 -8.4 trehalose utilization-like protein compare
Atu3784 -5.5 -29.9 glutamate synthase large subunit compare
Atu3482 -5.4 -11.3 pantoate--beta-alanine ligase compare
Atu2650 -5.4 -11.8 glycerol-3-phosphate dehydrogenase compare
Atu3739 -5.4 -2.8 phosphoglycerate kinase compare
Atu3885 -5.4 -10.9 inositol monophosphatase compare
Atu3755 -5.4 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -5.3 -5.2 phosphoserine aminotransferase compare
Atu1844 -5.3 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -5.3 -6.3 phosphoribosylamine--glycine ligase compare
Atu0399 -5.2 -8.0 dihydroorotase compare
Atu0298 -5.1 -8.5 orotidine 5 compare
Atu3339 -5.1 -13.5 trehalose/maltose ABC transporter permease conserved
Atu3338 -5.0 -15.3 trehalose/maltose ABC transporter substrate-binding protein conserved
Atu2015 -5.0 -15.7 aminotransferase compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu0400 -4.9 -6.8 orotate phosphoribosyltransferase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu0039 -4.7 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.7 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1686 -4.5 -17.7 peptidyl-prolyl cis-trans isomerse D compare
Atu1850 -4.5 -6.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2548 -4.5 -19.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2790 -4.3 -3.3 3-isopropylmalate dehydratase, small subunit compare
Atu3341 -4.3 -9.2 trehalose/maltose ABC transporter ATPase conserved
Atu0641 -4.1 -5.0 hypothetical protein compare
Atu1845 -4.1 -5.5 phosphoribosylformylglycinamidine synthase I compare
Atu3483 -4.0 -9.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0598 -3.8 -11.5 phosphogluconate dehydratase compare
Atu3731 -3.6 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0792 -3.5 -6.7 hypothetical protein compare
Atu1456 -3.4 -14.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1589 -3.4 -10.1 aminotransferase, class I compare
Atu3999 -3.3 -4.3 dithiobiotin synthetase compare
Atu1463 -3.2 -9.6 glycine cleavage system component H compare
Atu0876 -3.1 -3.0 superoxide dismutase compare
Atu1464 -3.1 -7.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu1446 -2.9 -3.9 two component response regulator compare
Atu1462 -2.9 -14.4 glycine cleavage system protein P2 compare
Atu2155 -2.8 -17.9 methionine synthase compare
Atu0184 -2.8 -3.8 glucokinase compare
Atu0040 -2.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0030 -2.6 -2.4 phosphocarrier protein HPr compare
Atu1620 -2.5 -13.7 triosephosphate isomerase compare
Atu1454 -2.5 -10.6 siroheme synthase compare
Atu2205 -2.5 -5.2 transcriptional regulator, MarR family compare
Atu4098 -2.4 -14.7 quinolinate synthetase compare
Atu3997 -2.4 -15.3 biotin synthetase compare
Atu0401 -2.4 -5.7 fructokinase compare
Atu4096 -2.4 -7.9 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -2.3 -10.3 L-aspartate oxidase compare
Atu1685 -2.3 -1.7 hypothetical protein compare
Atu1604 -2.3 -12.6 poly-beta-hydroxybutyrate synthase compare
Atu0029 -2.2 -8.2 S-adenosylhomocysteine hydrolase compare
Atu2569 -2.2 -12.7 thiamine biosynthesis protein compare
Atu4000 -2.1 -13.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3289 -2.1 -3.9 thiamine-phosphate pyrophosphorylase compare
Atu1455 -2.1 -4.9 hypothetical protein compare
Atu3290 -2.1 -9.8 phosphomethylpyrimidine kinase compare
Atu2127 -2.1 -9.0 L-carnitine dehydratase compare
Atu3998 -2.0 -12.2 8-amino-7-oxononanoate synthase compare
Atu4001 -2.0 -9.4 3-oxoacyl-ACP synthase compare
Atu3288 -2.0 -7.1 hydroxyethylthiazole kinase compare
Atu1359 -2.0 -1.7 dnaK deletion suppressor protein compare
Atu4173 -1.9 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu1748 -1.9 -8.2 NIFU-like protein compare
Atu2554 -1.8 -2.0 lysyl-tRNA synthetase compare
Atu2020 -1.8 -4.2 transcriptional regulator, TetR family compare
Atu5540 -1.7 -1.4 hypothetical protein compare
Atu0723 -1.7 -2.2 FAD dependent oxidoreductase compare
Atu0185 -1.7 -5.2 methylglyoxal synthase compare
Atu0422 -1.6 -2.1 ABC transporter, membrane spanning protein compare
Atu0346 -1.6 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1457 -1.6 -1.8 hypothetical protein compare
Atu4711 -1.6 -5.8 two component sensor kinase compare
Atu1572 -1.6 -7.3 hydrolase compare
Atu6114 -1.5 -3.0 hypothetical protein compare
Atu4616 -1.5 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu0189 -1.5 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4773 -1.5 -1.8 two component response regulator compare
Atu1891 -1.4 -3.5 cobalamin biosynthesis protein compare
Atu3908 -1.4 -7.1 GntR family transcriptional regulator compare
Atu4075 -1.4 -5.6 glycogen synthase compare
Atu8115 -1.3 -2.5 Hypothetical Protein compare
Atu2376 -1.3 -1.2 hypothetical protein compare
Atu0434 -1.3 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0769 -1.2 -1.9 protoheme IX farnesyltransferase compare
Atu1542 -1.2 -5.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2809 -1.2 -6.5 cobalamin biosynthesis protein compare
Atu2770 -1.2 -4.1 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2808 -1.2 -5.9 cobyric acid synthase compare
Atu3763 -1.2 -1.8 hypothetical protein compare
Atu2555 -1.2 -3.0 L-lysine 2,3-aminomutase compare
Atu2801 -1.2 -4.6 precorrin-2 C20 methyltransferase compare
Atu0590 -1.2 -6.2 transcriptional regulator repressor compare
Atu2793 -1.1 -3.9 cobyrinic acid a,c-diamide synthase compare
Atu0031 -1.1 -1.4 PTS system, IIA component compare
Atu2804 -1.1 -7.0 cobaltochelatase subunit compare
Atu5451 -1.1 -1.4 hypothetical protein compare
Atu2209 -1.1 -2.9 pyrroline-5-carboxylate reductase compare
Atu2805 -1.1 -3.9 cobalamin synthesis protein compare
Atu2795 -1.0 -6.0 cobalamin biosynthetic protein compare
Atu2802 -1.0 -5.1 precorrin-8X methylmutase compare
Atu2798 -1.0 -2.6 precorrin-6y methyltransferase compare
Atu0188 -1.0 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -0.9 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu4317 -0.9 -2.7 TetR family transcriptional regulator compare
Atu2083 -0.9 -3.6 DNA repair protein RecN compare
Atu2800 -0.9 -2.8 precorrin-3B C17-methyltransferase compare
Atu4187 -0.9 -1.4 tRNA-Met compare
Atu0332 -0.8 -4.7 RNA polymerase sigma-54 factor compare
Atu1546 -0.8 -3.0 transcriptional regulator, MerR family compare
Atu2125 -0.8 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -0.8 -1.4 hypothetical protein compare
Atu1076 -0.8 -2.5 colicin V production protein compare
Atu2796 -0.8 -2.8 precorrin-4 C11-methyltransferase compare
Atu2797 -0.8 -1.9 cobalamin biosynthesis protein compare
Atu2799 -0.8 -3.2 precorrin-6x reductase compare
Atu1364 -0.8 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0837 -0.8 -1.8 transcriptional regulator, MarR family compare
Atu0291 -0.7 -4.3 hypothetical protein compare
Atu5125 -0.7 -2.5 GntR family transcriptional regulator compare
Atu3775 -0.7 -2.7 hypothetical protein compare
Atu1699 -0.7 -1.8 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu1182 -0.7 -1.9 hypothetical protein compare
Atu1679 -0.7 -1.6 peptidyl prolyl cis-trans isomerase compare
Atu3486 -0.7 -1.8 DeoR family transcriptional regulator compare
Atu3732 -0.7 -3.7 hemolysin compare
Atu0601 -0.7 -4.3 oxidoreductase compare
Atu2124 -0.7 -1.6 transcriptional regulator, ArsR family compare
Atu1952 -0.7 -1.3 hypothetical protein compare
Atu2578 -0.7 -2.9 cAMP-dependent protein kinase regulatory subunit compare
Atu2803 -0.7 -2.2 Cobalamin biosynthesis associated protein compare
Atu2692 -0.7 -2.5 intracellular septation protein compare
Atu0842 -0.6 -1.4 hypothetical protein compare
Atu0331 -0.6 -2.0 sigma-54 modulation protein compare
Atu0824 -0.6 -0.8 hypothetical protein compare
Atu2807 -0.6 -3.0 cob(I)alamin adenosyltransferase compare
Atu1760 -0.6 -0.9 hypothetical protein compare
Atu2432 -0.6 -1.7 hypothetical protein compare
Atu3727 -0.6 -1.6 hypothetical protein compare
Atu1419 -0.6 -3.7 transcriptional regulator, GntR family compare
Atu1810 -0.6 -0.9 hypothetical protein compare
Atu2344 -0.6 -1.8 lactoylglutathione lyase compare
Atu2201 -0.6 -1.8 hydrolase compare
Atu3667 -0.6 -1.8 aspartate alpha-decarboxylase compare
Atu2123 -0.6 -1.9 methylenetetrahydrofolate reductase compare
Atu8194 -0.6 -2.2 hypothetical protein compare
Atu1149 -0.6 -0.8 adenylate cyclase compare
Atu3485 -0.6 -3.7 short chain dehydrogenase compare
Atu1062 -0.6 -1.1 phosphatidylserine synthase compare
Atu4342 -0.6 -1.8 hypothetical protein compare
Atu3518 -0.6 -3.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1160 -0.6 -2.6 hypothetical protein compare
Atu4514 -0.6 -2.2 RpiR family transcriptional regulator compare
Atu8190 -0.6 -1.3 hypothetical protein compare
Atu2640 -0.6 -2.0 hypothetical protein compare
Atu0153 -0.5 -1.9 transcriptional regulator, Fur family compare
Atu8012 -0.5 -1.2 hypothetical protein compare
Atu1904 -0.5 -1.1 transcriptional regulator compare
Atu1203 -0.5 -1.7 hypothetical protein compare
Atu4477 -0.5 -3.1 TetR family transcriptional regulator compare
Atu1163 -0.5 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2787 -0.5 -0.8 hypothetical protein compare
Atu1241 -0.5 -2.3 hypothetical protein compare
Atu2433 -0.5 -0.7 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source palatinose hydrate in Agrobacterium fabrum C58

For carbon source palatinose hydrate across organisms