Experiment set2IT076 for Pseudomonas simiae WCS417

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18595 -7.0 -4.8 3-isopropylmalate dehydratase compare
PS417_02510 -6.7 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01855 -6.6 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -6.3 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04415 -6.1 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -6.1 -12.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.9 -10.7 ketol-acid reductoisomerase compare
PS417_04420 -5.9 -11.3 histidinol dehydrogenase compare
PS417_25720 -5.9 -10.5 anthranilate synthase component II compare
PS417_18600 -5.9 -5.4 isopropylmalate isomerase compare
PS417_25725 -5.6 -19.1 anthranilate synthase component I compare
PS417_01565 -5.2 -4.9 imidazole glycerol phosphate synthase compare
PS417_23805 -5.2 -7.1 acetolactate synthase 3 regulatory subunit compare
PS417_18585 -5.2 -7.0 3-isopropylmalate dehydrogenase compare
PS417_00185 -5.1 -5.0 tryptophan synthase subunit beta compare
PS417_01850 -5.0 -9.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.9 -12.6 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -4.9 -2.1 orotate phosphoribosyltransferase compare
PS417_16465 -4.8 -10.9 sirohydrochlorin ferrochelatase compare
PS417_27040 -4.8 -3.8 3-phosphoglycerate dehydrogenase compare
PS417_26740 -4.7 -12.9 homoserine acetyltransferase compare
PS417_01950 -4.4 -8.6 malate dehydrogenase compare
PS417_18530 -4.4 -5.4 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.3 -5.5 methionine biosynthesis protein MetW compare
PS417_27835 -4.3 -8.7 endoribonuclease compare
PS417_24745 -4.2 -6.4 gamma-glutamyl phosphate reductase compare
PS417_12290 -4.1 -6.4 sulfite reductase compare
PS417_26995 -4.1 -12.2 phosphoserine phosphatase compare
PS417_27195 -4.0 -2.3 N-acetylglutamate synthase compare
PS417_00180 -3.8 -4.5 tryptophan synthase subunit alpha compare
PS417_12855 -3.8 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01580 -3.7 -1.9 imidazole glycerol phosphate synthase compare
PS417_26890 -3.6 -5.8 dihydroxy-acid dehydratase compare
PS417_23995 -3.6 -1.5 preprotein translocase subunit SecG compare
PS417_05595 -3.6 -7.4 ornithine carbamoyltransferase compare
PS417_25715 -3.5 -6.4 anthranilate phosphoribosyltransferase compare
PS417_06375 -3.4 -2.0 deoxycytidine triphosphate deaminase compare
PS417_25710 -3.3 -2.9 indole-3-glycerol-phosphate synthase compare
PS417_26730 -3.3 -2.0 pyrroline-5-carboxylate reductase compare
PS417_24155 -3.2 -4.8 ATP-binding protein compare
PS417_08125 -3.1 -1.9 prephenate dehydratase compare
PS417_23110 -3.1 -5.9 2-isopropylmalate synthase compare
PS417_02415 -3.1 -6.6 phosphoserine phosphatase compare
PS417_01605 -2.7 -2.3 phosphoglycerate mutase compare
PS417_20160 -2.6 -3.5 cysteine synthase compare
PS417_23545 -2.6 -3.9 gamma-glutamyl kinase compare
PS417_20125 -2.4 -4.5 phosphoribosylglycinamide formyltransferase compare
PS417_01570 -2.3 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07640 -2.3 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23915 -2.2 -6.5 pantoate--beta-alanine ligase compare
PS417_23770 -2.0 -3.7 exodeoxyribonuclease V subunit alpha compare
PS417_21480 -1.9 -3.1 23S rRNA pseudouridylate synthase compare
PS417_23775 -1.8 -3.7 exodeoxyribonuclease V subunit beta compare
PS417_20985 -1.5 -3.2 porin compare
PS417_21630 -1.5 -3.5 magnesium transporter compare
PS417_03100 -1.5 -1.5 pilus assembly protein compare
PS417_01560 -1.4 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_21020 -1.4 -9.5 phosphoenolpyruvate synthase conserved
PS417_24935 -1.3 -1.2 hypothetical protein compare
PS417_01210 -1.3 -7.4 hypothetical protein compare
PS417_27815 -1.3 -1.8 hypothetical protein compare
PS417_08220 -1.3 -1.2 epimerase compare
PS417_09150 -1.3 -2.4 energy transducer TonB compare
PS417_24835 -1.2 -5.2 hypothetical protein compare
PS417_00845 -1.2 -1.8 transcriptional regulator compare
PS417_20635 -1.2 -1.3 ABC transporter ATP-binding protein compare
PS417_01095 -1.1 -2.1 amino acid ABC transporter ATP-binding protein compare
PS417_02975 -1.0 -4.2 3-dehydroquinate dehydratase compare
PS417_05455 -1.0 -4.2 XRE family transcriptional regulator compare
PS417_05850 -1.0 -3.7 LysR family transcriptional regulator compare
PS417_08225 -1.0 -3.3 acetolactate synthase compare
PS417_18590 -1.0 -2.5 SAM-dependent methyltransferase compare
PS417_19095 -1.0 -1.4 hypothetical protein compare
PS417_09245 -0.9 -1.3 recombinase RdgC compare
PS417_19835 -0.9 -1.3 flagellar biosynthesis protein FliS compare
PS417_19600 -0.9 -1.5 exonuclease compare
PS417_09010 -0.9 -2.2 phosphohistidine phosphatase compare
PS417_16680 -0.9 -1.6 MFS transporter compare
PS417_15750 -0.9 -1.5 protease compare
PS417_07170 -0.8 -3.6 hypothetical protein compare
PS417_07010 -0.8 -2.8 pseudouridine synthase compare
PS417_06030 -0.8 -3.1 hypothetical protein compare
PS417_04650 -0.8 -1.3 D-alanine--D-alanine ligase compare
PS417_06620 -0.8 -2.5 hypothetical protein compare
PS417_26900 -0.8 -1.3 L-cystine transporter tcyP compare
PS417_08200 -0.8 -2.2 hypothetical protein compare
PS417_13445 -0.8 -1.5 D-aminopeptidase compare
PS417_17035 -0.8 -1.2 Cro/Cl family transcriptional regulator compare
PS417_01145 -0.8 -1.0 taurine transporter ATP-binding subunit compare
PS417_08205 -0.7 -2.3 acetyltransferase compare
PS417_10575 -0.7 -1.5 DNA alkylation repair protein compare
PS417_13255 -0.7 -1.8 ABC transporter compare
PS417_08155 -0.7 -1.9 integration host factor subunit beta compare
PS417_03260 -0.7 -1.9 5S ribosomal RNA compare
PS417_16490 -0.7 -1.7 cell division protein FtsK compare
PS417_26850 -0.7 -0.9 twin-arginine translocation pathway signal protein compare
PS417_17125 -0.7 -2.1 transcriptional regulator compare
PS417_13175 -0.7 -1.9 iron transporter compare
PS417_21655 -0.7 -1.2 aspartate kinase compare
PS417_01710 -0.7 -3.6 histidine utilization repressor compare
PS417_08090 -0.7 -1.0 3-oxoacyl-ACP reductase compare
PS417_12355 -0.7 -1.4 magnesium chelatase compare
PS417_23380 -0.7 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_13800 -0.7 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_24840 -0.7 -1.5 hypothetical protein compare
PS417_09930 -0.7 -1.5 hypothetical protein compare
PS417_03380 -0.7 -1.3 hypothetical protein compare
PS417_18690 -0.7 -2.4 aromatic amino acid aminotransferase compare
PS417_11615 -0.7 -1.3 urea ABC transporter ATP-binding protein compare
PS417_20855 -0.7 -0.7 hypothetical protein compare
PS417_05105 -0.7 -2.4 membrane protein compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_21360 -0.7 -1.0 termination factor Rho compare
PS417_27870 -0.7 -2.4 ATP-dependent DNA helicase RecG compare
PS417_24030 -0.7 -1.7 MFS transporter compare
PS417_02925 -0.7 -2.5 membrane protein compare
PS417_20610 -0.7 -1.0 hypothetical protein compare
PS417_08195 -0.7 -4.2 hypothetical protein compare
PS417_23315 -0.7 -1.2 transcriptional regulator compare
PS417_06045 -0.6 -1.8 membrane protein compare
PS417_08230 -0.6 -1.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07470 -0.6 -1.1 hypothetical protein compare
PS417_10985 -0.6 -0.7 NADH:flavin oxidoreductase compare
PS417_24370 -0.6 -0.8 (2Fe-2S)-binding protein compare
PS417_14950 -0.6 -2.3 structural protein MipA compare
PS417_16555 -0.6 -1.4 cupin compare
PS417_27435 -0.6 -3.4 polyphosphate kinase compare
PS417_14075 -0.6 -1.4 hypothetical protein compare
PS417_17565 -0.6 -1.3 branched-chain amino acid aminotransferase compare
PS417_06685 -0.6 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_02555 -0.6 -4.9 exoribonuclease R compare
PS417_12870 -0.6 -0.8 enoyl-CoA hydratase compare
PS417_11770 -0.6 -1.3 pyruvate dehydrogenase compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_11705 -0.6 -3.6 cyclic peptide transporter compare
PS417_12175 -0.6 -2.3 peptide ABC transporter permease compare
PS417_04365 -0.6 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_17685 -0.6 -1.3 allantoate amidohydrolase compare
PS417_22385 -0.6 -3.8 quinolinate synthase A compare
PS417_03925 -0.6 -3.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_08245 -0.6 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_15305 -0.6 -1.4 type VI secretion protein compare
PS417_27865 -0.6 -2.1 LysR family transcriptional regulator compare
PS417_16095 -0.6 -2.8 amidohydrolase compare
PS417_18435 -0.6 -1.4 hypothetical protein compare
PS417_21025 -0.6 -2.7 PEP synthetase regulatory protein compare
PS417_19805 -0.6 -1.0 flagellar M-ring protein FliF compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26815 -0.6 -1.7 peptidase M16 compare
PS417_16065 -0.6 -1.2 3-phytase compare
PS417_17755 -0.6 -1.6 hypothetical protein compare
PS417_22810 -0.5 -1.5 DNA base-flipping protein YbaZ compare
PS417_20030 -0.5 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_07420 -0.5 -2.2 restriction endonuclease compare
PS417_24500 -0.5 -1.7 DEAD/DEAH box helicase compare
PS417_24630 -0.5 -1.6 ATP-binding protein compare
PS417_22195 -0.5 -2.5 peptidase compare
PS417_23710 -0.5 -2.1 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
PS417_02045 -0.5 -1.5 3-oxoacyl-ACP synthase compare
PS417_17630 -0.5 -1.2 RNA polymerase sigma factor compare
PS417_19620 -0.5 -1.1 hypothetical protein compare
PS417_15845 -0.5 -2.6 membrane protein compare
PS417_08730 -0.5 -1.4 cytochrome C compare
PS417_00565 -0.5 -1.7 NAD(P) transhydrogenase compare
PS417_27675 -0.5 -1.5 xanthine phosphoribosyltransferase compare
PS417_17795 -0.5 -0.7 ABC transporter permease compare
PS417_16005 -0.5 -2.0 ATPase compare
PS417_23390 -0.5 -2.8 ubiquinol oxidase subunit II compare
PS417_02020 -0.5 -2.7 LysR family transcriptional regulator compare
PS417_20040 -0.5 -1.9 cobyric acid synthase compare
PS417_03385 -0.5 -0.9 flavin reductase compare
PS417_07175 -0.5 -1.7 beta-lactamase compare
PS417_25985 -0.5 -1.2 dethiobiotin synthetase compare
PS417_27800 -0.5 -2.5 exodeoxyribonuclease III compare
PS417_25895 -0.5 -1.4 glyoxalase compare
PS417_20060 -0.5 -3.1 cobyrinic acid a,c-diamide synthase compare
PS417_16195 -0.5 -0.7 AraC family transcriptional regulator compare
PS417_27960 -0.5 -2.5 Hcp1 family type VI secretion system effector compare
PS417_18250 -0.5 -1.2 chemotaxis protein compare
PS417_17840 -0.5 -1.4 betaine-aldehyde dehydrogenase compare
PS417_21120 -0.5 -1.1 phosphoserine phosphatase compare
PS417_13490 -0.5 -1.1 hypothetical protein compare
PS417_13820 -0.5 -2.2 UDP-glucose 6-dehydrogenase compare
PS417_04425 -0.5 -2.8 histidinol-phosphate aminotransferase compare
PS417_23370 -0.5 -1.7 protoheme IX farnesyltransferase compare
PS417_09595 -0.5 -1.7 membrane protein compare
PS417_23950 -0.5 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_13945 -0.5 -1.5 GNAT family acetyltransferase compare
PS417_15215 -0.5 -0.9 protein activator of alkane oxidation PraA compare
PS417_06125 -0.5 -1.6 hypothetical protein compare
PS417_04290 -0.4 -1.9 hypothetical protein compare
PS417_12310 -0.4 -3.0 methionine synthase compare
PS417_08250 -0.4 -1.1 competence protein ComEA compare
PS417_09325 -0.4 -1.8 peptidase S41 compare
PS417_17680 -0.4 -1.8 ABC transporter compare
PS417_03560 -0.4 -1.1 GTP-binding protein compare
PS417_11765 -0.4 -1.8 ABC transporter substrate-binding protein compare
PS417_02775 -0.4 -2.7 heat-shock protein compare
PS417_23575 -0.4 -1.2 hypothetical protein compare
PS417_02370 -0.4 -1.0 ADP-ribose pyrophosphatase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Glutamine in Pseudomonas simiae WCS417

For carbon source L-Glutamine across organisms