| | gene | name | fitness | t score | description | |
|---|
| b0889 | lrp | +1.2 | 3.6 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2895 | fldB | +1.2 | 2.8 | flavodoxin 2 (NCBI) | compare |
| b4370 | leuQ | +1.1 | 2.7 | tRNA-Leu (NCBI) | compare |
| b1524 | yneH | +1.1 | 1.5 | predicted glutaminase (NCBI) | compare |
| b1778 | yeaA | +1.1 | 2.5 | methionine sulfoxide reductase B (NCBI) | compare |
| b2198 | ccmD | +1.0 | 2.6 | cytochrome c biogenesis protein (NCBI) | compare |
| b4406 | yaeP | +1.0 | 2.0 | hypothetical protein (NCBI) | compare |
| b4416 | rybA | +1.0 | 1.7 | unknown RNA (NCBI) | compare |
| b0247 | ykfG | +1.0 | 1.6 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1448 | yncA | +1.0 | 2.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b0696 | kdpC | +1.0 | 1.6 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1572 | ydfB | +1.0 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1296 | ycjJ | +0.9 | 2.7 | putative amino acid/amine transport protein (VIMSS) | compare |
| b2114 | metG | +0.9 | 1.4 | methionyl-tRNA synthetase (NCBI) | compare |
| b2953 | yggU | +0.9 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +0.9 | 1.1 | predicted oxidoreductase (NCBI) | compare |
| b1476 | fdnI | +0.9 | 1.5 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4438 | cyaR | +0.8 | 1.8 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1550 | b1550 | +0.8 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2915 | yqfE | +0.8 | 2.4 | hypothetical protein (RefSeq) | compare |
| b3973 | birA | +0.8 | 1.6 | biotin--protein ligase (NCBI) | compare |
| b4394 | yjjX | +0.8 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1511 | ydeV | +0.8 | 3.1 | putative kinase (VIMSS) | compare |
| b4603 | rseX | +0.8 | 1.0 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1671 | ydhX | +0.8 | 1.5 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b0825 | mipB | +0.7 | 2.4 | putative transaldolase (VIMSS) | compare |
| b1639 | ydhA | +0.7 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2377 | yfdY | +0.7 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b2080 | b2080 | +0.7 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4538 | yoeF | +0.7 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1427 | rimL | +0.7 | 1.5 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1426 | ydcH | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2490 | b2490 | +0.7 | 2.2 | putative protein processing element (VIMSS) | compare |
| b1566 | flxA | +0.7 | 2.0 | Qin prophage; predicted protein (NCBI) | compare |
| b1359 | ydaU | +0.7 | 1.7 | Rac prophage; conserved protein (NCBI) | compare |
| b4545 | ypdJ | +0.6 | 1.9 | no description | compare |
| b1380 | ldhA | +0.6 | 1.2 | D-lactate dehydrogenase (NCBI) | compare |
| b4457 | csrC | +0.6 | 2.0 | regulatory RNA (NCBI) | compare |
| b0964 | yccT | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b4113 | basR | +0.6 | 3.3 | DNA-binding response regulator in two-component regulatory system with BasS (NCBI) | compare |
| b4445 | omrB | +0.6 | 1.9 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b0014 | dnaK | +0.6 | 0.9 | molecular chaperone DnaK (NCBI) | compare |
| b4277 | yjgZ | +0.6 | 2.5 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b1302 | puuE | +0.6 | 1.5 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b0714 | nei | +0.6 | 2.2 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b4653 | yicT | +0.6 | 1.4 | no description | compare |
| b1400 | paaY | +0.6 | 1.1 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4630 | ykgP | +0.6 | 1.3 | no description | compare |
| b2614 | grpE | +0.6 | 0.9 | heat shock protein (NCBI) | compare |
| b0450 | glnK | +0.6 | 1.1 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b4195 | ulaC | +0.6 | 1.5 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b0967 | yccW | +0.6 | 2.8 | predicted methyltransferase (RefSeq) | compare |
| b4151 | frdD | +0.6 | 1.5 | fumarate reductase subunit D (NCBI) | compare |
| b2096 | gatY | +0.6 | 1.7 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2939 | yqgB | +0.6 | 0.7 | predicted protein (RefSeq) | compare |
| b1346 | ydaQ | +0.6 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1988 | nac | +0.6 | 2.4 | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | compare |
| b0880 | cspD | +0.6 | 1.1 | cold shock protein homolog (NCBI) | compare |
| b1362 | rzpR | +0.6 | 1.5 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b3134 | agaW | +0.6 | 1.7 | N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene) (RefSeq) | compare |
| b0828 | iaaA | +0.6 | 1.6 | L-asparaginase (NCBI) | compare |
| b2905 | gcvT | +0.6 | 2.9 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b3537 | yhjT | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1724 | ydiZ | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b1865 | nudB | +0.5 | 0.7 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2393 | nupC | +0.5 | 2.8 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b2009 | sbmC | +0.5 | 1.7 | DNA gyrase inhibitor (NCBI) | compare |
| b0238 | gpt | +0.5 | 1.7 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b1295 | ymjA | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b4646 | yrdE | +0.5 | 1.5 | no description | compare |
| b0778 | bioD | +0.5 | 1.7 | dethiobiotin synthetase (NCBI) | compare |
| b2586 | yfiM | +0.5 | 1.4 | predicted protein (RefSeq) | compare |
| b1531 | marA | +0.5 | 1.5 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b1609 | rstB | +0.5 | 2.0 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b4381 | deoC | +0.5 | 1.9 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b1758 | b1758 | +0.5 | 0.9 | putative cytochrome oxidase (VIMSS) | compare |
| b1278 | pgpB | +0.5 | 1.1 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1518 | lsrG | +0.5 | 1.2 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b4196 | ulaD | +0.5 | 2.2 | 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI) | compare |
| b2433 | b2433 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0965 | b0965 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4066 | yjcF | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b1214 | ychA | +0.5 | 1.8 | predicted transcriptional regulator (NCBI) | compare |
| b3437 | gntK | +0.5 | 2.4 | gluconokinase 2, thermoresistant (VIMSS) | compare |
| b2173 | yeiR | +0.5 | 2.6 | predicted enzyme (NCBI) | compare |
| b2261 | menC | +0.5 | 2.2 | O-succinylbenzoate synthase (NCBI) | compare |
| b0365 | tauA | +0.5 | 2.0 | taurine transport system periplasmic protein (VIMSS) | compare |
| b4373 | rimI | +0.5 | 1.2 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b0384 | psiF | +0.5 | 1.5 | induced by phosphate starvation (VIMSS) | compare |
| b2506 | yfgI | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2904 | gcvH | +0.5 | 0.9 | glycine cleavage system protein H (NCBI) | compare |
| b4544 | yfbW | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0712 | ybgK | +0.5 | 2.2 | predicted enzyme subunit (NCBI) | compare |
| b4704 | arrS | +0.5 | 0.8 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4203 | rplI | +0.5 | 1.6 | 50S ribosomal protein L9 (NCBI) | compare |
| b2954 | yggV | +0.5 | 1.9 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b1958 | yedI | +0.5 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b3676 | yidH | +0.5 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b4137 | cutA | +0.5 | 2.6 | copper binding protein, copper sensitivity (NCBI) | compare |
| b2258 | b2258 | +0.5 | 0.7 | putative transport/receptor protein (VIMSS) | compare |
| b1661 | cfa | +0.5 | 1.6 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1251 | yciI | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3085 | ygjP | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0228 | yafM | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1431 | ydcL | +0.5 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b2293 | yfbT | +0.5 | 1.1 | putative phosphatase (VIMSS) | compare |
| b1216 | chaA | +0.5 | 2.8 | calcium/sodium:proton antiporter (NCBI) | compare |
| b1617 | uidA | +0.5 | 2.2 | beta-D-glucuronidase (NCBI) | compare |
| b1672 | ydhW | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b3206 | npr | +0.5 | 2.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0851 | nfsA | +0.5 | 1.8 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b1010 | ycdK | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2798 | ygdG | +0.5 | 1.8 | Ssb-binding protein, misidentified as ExoIX (RefSeq) | compare |
| b2539 | hcaF | +0.5 | 1.6 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b0831 | yliC | +0.5 | 1.7 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1392 | paaE | +0.5 | 1.7 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b2637 | yfjT | +0.5 | 1.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1396 | paaI | +0.5 | 1.7 | predicted thioesterase (NCBI) | compare |
| b2903 | gcvP | +0.5 | 3.3 | glycine dehydrogenase (NCBI) | compare |
| b1999 | yeeP | +0.5 | 1.6 | putative histone (VIMSS) | compare |
| b2203 | napB | +0.4 | 2.0 | cytochrome c-type protein (VIMSS) | compare |
| b0018 | mokC | +0.4 | 0.5 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4063 | soxR | +0.4 | 1.5 | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) | compare |
| b0044 | fixX | +0.4 | 1.4 | predicted 4Fe-4S ferredoxin-type protein (NCBI) | compare |
| b1151 | ymfO | +0.4 | 1.2 | e14 prophage; conserved protein (RefSeq) | compare |
| b1618 | uidR | +0.4 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1248 | b1248 | +0.4 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b0758 | galT | +0.4 | 2.1 | galactose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2886 | ygfS | +0.4 | 1.9 | putative oxidoreductase, Fe-S subunit (VIMSS) | compare |
| b1684 | sufA | +0.4 | 0.9 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1565 | ydfV | +0.4 | 1.4 | Qin prophage; predicted protein (NCBI) | compare |
| b0968 | yccX | +0.4 | 1.5 | predicted acylphosphatase (NCBI) | compare |
| b4513 | kdpF | +0.4 | 1.0 | potassium ion accessory transporter subunit (NCBI) | compare |
| b1530 | marR | +0.4 | 1.2 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b1134 | ymfB | +0.4 | 0.7 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1190 | dadX | +0.4 | 1.8 | alanine racemase (NCBI) | compare |
| b3466 | yhhL | +0.4 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b1360 | ydaV | +0.4 | 0.7 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b0443 | ybaW | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3223 | nanE | +0.4 | 2.4 | predicted N-acetylmannosamine-6-P epimerase (NCBI) | compare |
| b3257 | yhdT | +0.4 | 0.8 | conserved inner membrane protein (NCBI) | compare |
| b0520 | ylbF | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1589 | ynfG | +0.4 | 1.0 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b4413 | sokC | +0.4 | 0.8 | regulatory antisense RNA (NCBI) | compare |
| b1920 | fliY | +0.4 | 1.0 | cystine transporter subunit (NCBI) | compare |
| b1422 | ydcI | +0.4 | 2.1 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1590 | ynfH | +0.4 | 1.4 | oxidoreductase, membrane subunit (NCBI) | compare |
| b0435 | bolA | +0.4 | 1.9 | possible regulator of murein genes (VIMSS) | compare |
| b4376 | osmY | +0.4 | 1.6 | periplasmic protein (NCBI) | compare |
| b4468 | glcE | +0.4 | 1.6 | glycolate oxidase FAD binding subunit (NCBI) | compare |
| b1266 | yciV | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b0183 | rnhB | +0.4 | 1.4 | ribonuclease HII (NCBI) | compare |
| b2951 | yggS | +0.4 | 1.4 | predicted enzyme (NCBI) | compare |
| b0097 | yacA | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0854 | potF | +0.4 | 1.7 | putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b4436 | ryeC | +0.4 | 0.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b4176 | yjeT | +0.4 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b4371 | rsmC | +0.4 | 1.9 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1657 | ydhP | +0.4 | 1.8 | predicted transporter (NCBI) | compare |
| b1154 | ycfK | +0.4 | 1.9 | e14 prophage; predicted protein (NCBI) | compare |
| b2540 | hcaC | +0.4 | 1.3 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b1411 | ynbD | +0.4 | 1.6 | predicted phosphatase, inner membrane protein (NCBI) | compare |
| b2432 | yfeY | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b3361 | fic | +0.4 | 1.2 | stationary-phase protein, cell division (NCBI) | compare |
| b2124 | yehS | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b4121 | yjdF | +0.4 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1582 | ynfA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1141 | ymfG | +0.4 | 1.2 | e14 prophage; predicted excisionase (NCBI) | compare |
| b0675 | nagD | +0.4 | 1.8 | UMP phosphatase (NCBI) | compare |
| b1242 | ychE | +0.4 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b4687 | shoB | +0.4 | 1.5 | toxic membrane protein (RefSeq) | compare |
| b3860 | dsbA | +0.4 | 2.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0189 | yaeO | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4171 | miaA | +0.4 | 1.8 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2187 | yejL | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b2128 | yehW | +0.4 | 1.3 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2720 | hycF | +0.4 | 1.9 | formate hydrogenlyase complex iron-sulfur protein (NCBI) | compare |
| b1812 | pabB | +0.4 | 1.3 | para-aminobenzoate synthase component I (NCBI) | compare |
| b0707 | ybgA | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2022 | hisB | +0.4 | 1.8 | imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) | compare |
| b0809 | glnQ | +0.4 | 1.4 | glutamine ABC transporter ATP-binding protein (NCBI) | compare |
| b0258 | ykfC | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1412 | azoR | +0.4 | 0.7 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b2038 | rfbC | +0.4 | 2.0 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b4217 | ytfK | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1079 | flgH | +0.4 | 1.2 | flagellar L-ring protein precursor H (NCBI) | compare |
| b0839 | dacC | +0.4 | 1.9 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | compare |
| b3397 | nudE | +0.4 | 2.2 | ADP-ribose diphosphatase (NCBI) | compare |
| b1622 | malY | +0.4 | 1.3 | bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon (NCBI) | compare |
| b3148 | yraN | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b4533 | ynfO | +0.4 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b2325 | yfcL | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b3393 | yrfB | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b0943 | b0943 | +0.4 | 1.7 | putative fimbrial-like protein (VIMSS) | compare |
| b3995 | rsd | +0.4 | 1.6 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | compare |
| b1361 | ydaW | +0.4 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b3129 | sohA | +0.4 | 0.9 | predicted regulator (NCBI) | compare |
| b1009 | rarA | +0.4 | 1.4 | predicted hydrolase (NCBI) | compare |
| b4522 | yciX_1 | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |