Experiment set2IT076 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3872 +1.4 3.4 SnoaL-like polyketide cyclase. compare
Echvi_4081 +1.3 2.1 Malic enzyme compare
Echvi_1881 +1.2 2.4 ADP-ribose pyrophosphatase compare
Echvi_2503 +1.2 2.7 hypothetical protein compare
Echvi_3456 +1.1 2.8 Uncharacterized protein conserved in bacteria compare
Echvi_1343 +1.0 1.7 Predicted endonuclease containing a URI domain compare
Echvi_4595 +1.0 2.2 hypothetical protein compare
Echvi_3451 +1.0 2.8 hypothetical protein compare
Echvi_4375 +1.0 1.5 hypothetical protein compare
Echvi_0582 +1.0 4.1 hypothetical protein compare
Echvi_3955 +1.0 2.4 Exonuclease VII small subunit. compare
Echvi_0128 +1.0 2.0 hypothetical protein compare
Echvi_4365 +0.9 1.5 hypothetical protein compare
Echvi_3934 +0.9 1.9 hypothetical protein compare
Echvi_4357 +0.9 2.4 Protein of unknown function (DUF3714). compare
Echvi_1603 +0.9 2.6 hypothetical protein compare
Echvi_1020 +0.9 1.2 hypothetical protein compare
Echvi_0641 +0.9 1.0 Transposase and inactivated derivatives compare
Echvi_2586 +0.9 1.3 hypothetical protein compare
Echvi_4024 +0.8 2.8 hypothetical protein compare
Echvi_4308 +0.8 1.3 hypothetical protein compare
Echvi_1201 +0.8 3.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_4047 +0.8 2.4 hypothetical protein compare
Echvi_2217 +0.8 1.6 hypothetical protein compare
Echvi_2679 +0.8 1.4 hypothetical protein compare
Echvi_1516 +0.8 2.0 hypothetical protein compare
Echvi_2135 +0.8 1.3 6-pyruvoyl-tetrahydropterin synthase compare
Echvi_1662 +0.8 2.1 hypothetical protein compare
Echvi_1648 +0.7 2.4 hypothetical protein compare
Echvi_0180 +0.7 1.7 transcription elongation factor GreA compare
Echvi_2193 +0.7 5.3 Transcriptional regulators compare
Echvi_2310 +0.7 1.8 conserved hypothetical protein YidD compare
Echvi_3910 +0.7 4.6 Transcriptional regulator/sugar kinase compare
Echvi_0935 +0.7 3.2 bacillithiol system protein YtxJ compare
Echvi_3142 +0.7 1.5 hypothetical protein compare
Echvi_4025 +0.7 1.7 hypothetical protein compare
Echvi_3717 +0.7 5.5 Outer membrane protein/protective antigen OMA87 compare
Echvi_4606 +0.7 3.4 Protein of unknown function (DUF2721). compare
Echvi_3914 +0.7 6.0 Transcriptional regulators compare
Echvi_4369 +0.7 1.0 hypothetical protein compare
Echvi_4536 +0.6 4.1 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Echvi_1385 +0.6 2.1 Bacterial mobilisation protein (MobC). compare
Echvi_1348 +0.6 2.5 phage/plasmid-related protein TIGR03299 compare
Echvi_3519 +0.6 2.2 hypothetical protein compare
Echvi_3761 +0.6 1.5 Fructose-2,6-bisphosphatase compare
Echvi_2330 +0.6 2.0 hypothetical protein compare
Echvi_1950 +0.6 1.7 hypothetical protein compare
Echvi_3229 +0.6 2.4 hypothetical protein compare
Echvi_1825 +0.6 0.7 hypothetical protein compare
Echvi_2266 +0.6 4.7 Alanine dehydrogenase compare
Echvi_3283 +0.6 1.5 Lactoylglutathione lyase and related lyases compare
Echvi_2824 +0.6 4.5 hypothetical protein compare
Echvi_4573 +0.6 4.6 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_1283 +0.6 1.8 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_0482 +0.6 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_3676 +0.5 2.9 hypothetical protein compare
Echvi_2084 +0.5 4.7 Uncharacterized protein conserved in bacteria compare
Echvi_1747 +0.5 2.4 amino acid carrier protein compare
Echvi_2829 +0.5 5.0 hypothetical protein compare
Echvi_0522 +0.5 4.1 SusD family. compare
Echvi_2554 +0.5 1.0 hypothetical protein compare
Echvi_0750 +0.5 1.7 hypothetical protein compare
Echvi_0048 +0.5 1.2 Pseudouridylate synthases, 23S RNA-specific compare
Echvi_4594 +0.5 3.1 Xaa-Pro aminopeptidase compare
Echvi_4415 +0.5 2.5 Transcription antiterminator compare
Echvi_1637 +0.5 2.3 hypothetical protein compare
Echvi_0626 +0.5 3.1 hypothetical protein compare
Echvi_4411 +0.5 2.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_2574 +0.5 1.9 hypothetical protein compare
Echvi_2072 +0.5 2.3 hypothetical protein compare
Echvi_1136 +0.5 1.4 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases compare
Echvi_1200 +0.5 1.8 Predicted membrane protein compare
Echvi_1752 +0.5 1.4 hypothetical protein compare
Echvi_0211 +0.5 1.2 hypothetical protein compare
Echvi_0169 +0.5 4.2 hypothetical protein compare
Echvi_3764 +0.5 1.0 Predicted transcriptional regulators compare
Echvi_0129 +0.5 2.3 hypothetical protein compare
Echvi_1638 +0.5 1.1 hypothetical protein compare
Echvi_0291 +0.5 0.9 hypothetical protein compare
Echvi_0186 +0.5 1.5 Predicted metal-binding, possibly nucleic acid-binding protein compare
Echvi_0590 +0.5 1.0 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
Echvi_0613 +0.5 1.6 hypothetical protein compare
Echvi_3347 +0.5 0.5 hypothetical protein compare
Echvi_4650 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_3641 +0.5 1.9 Uncharacterized conserved protein compare
Echvi_1490 +0.5 3.8 alanine racemase compare
Echvi_4358 +0.5 1.6 Bacteroides conjugative transposon TraK protein compare
Echvi_4278 +0.5 0.8 hypothetical protein compare
Echvi_0553 +0.5 2.6 hypothetical protein compare
Echvi_2222 +0.5 1.6 hypothetical protein compare
Echvi_0652 +0.5 2.5 Outer membrane protein compare
Echvi_0438 +0.5 0.8 hypothetical protein compare
Echvi_2614 +0.5 2.6 SusD family. compare
Echvi_3918 +0.5 0.6 Histone H1-like protein Hc1. compare
Echvi_3546 +0.5 1.2 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Echvi_0260 +0.5 1.8 Protein of unknown function (DUF3467). compare
Echvi_3381 +0.4 4.0 Pregnancy-associated plasma protein-A. compare
Echvi_0674 +0.4 3.5 hypothetical protein compare
Echvi_0551 +0.4 1.7 hypothetical protein compare
Echvi_1803 +0.4 1.8 hypothetical protein compare
Echvi_4459 +0.4 1.9 Protein of unknown function (DUF3703). compare
Echvi_0733 +0.4 3.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_2520 +0.4 2.2 Predicted unusual protein kinase compare
Echvi_1733 +0.4 1.5 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4080 +0.4 0.6 hypothetical protein compare
Echvi_4534 +0.4 1.6 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0346 +0.4 1.9 Predicted acyltransferase compare
Echvi_0869 +0.4 1.5 hypothetical protein compare
Echvi_2373 +0.4 1.6 hypothetical protein compare
Echvi_1547 +0.4 1.2 hypothetical protein compare
Echvi_3911 +0.4 3.6 alpha-1,2-mannosidase, putative compare
Echvi_3505 +0.4 0.5 hypothetical protein compare
Echvi_2937 +0.4 0.8 Uncharacterized conserved protein compare
Echvi_1216 +0.4 2.3 hypothetical protein compare
Echvi_1900 +0.4 0.9 nitrite reductase [NAD(P)H], small subunit compare
Echvi_4327 +0.4 1.6 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0886 +0.4 1.9 hypothetical protein compare
Echvi_4145 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Echvi_1022 +0.4 3.0 ABC-type spermidine/putrescine transport systems, ATPase components compare
Echvi_1420 +0.4 1.4 hypothetical protein compare
Echvi_2365 +0.4 1.5 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_4083 +0.4 3.9 hypothetical protein compare
Echvi_1452 +0.4 1.4 dTDP-glucose pyrophosphorylase compare
Echvi_0776 +0.4 2.9 Sterol desaturase compare
Echvi_3036 +0.4 2.8 Response regulator of the LytR/AlgR family compare
Echvi_2187 +0.4 2.6 hypothetical protein compare
Echvi_3457 +0.4 1.1 hypothetical protein compare
Echvi_0144 +0.4 0.5 TIGR00159 family protein compare
Echvi_1552 +0.4 1.1 hypothetical protein compare
Echvi_4067 +0.4 2.3 hypothetical protein compare
Echvi_1688 +0.4 2.1 Predicted metal-dependent hydrolase of the TIM-barrel fold compare
Echvi_3824 +0.4 0.6 hypothetical protein compare
Echvi_0538 +0.4 1.8 hypothetical protein compare
Echvi_2817 +0.4 2.9 Na+/H+ antiporter NhaC compare
Echvi_1416 +0.4 2.2 hypothetical protein compare
Echvi_2793 +0.4 3.6 hypothetical protein compare
Echvi_3075 +0.4 1.0 hypothetical protein compare
Echvi_2223 +0.4 1.5 hypothetical protein compare
Echvi_3871 +0.4 1.2 hypothetical protein compare
Echvi_1258 +0.4 2.4 Peptide methionine sulfoxide reductase compare
Echvi_4140 +0.4 1.9 Copper chaperone compare
Echvi_3648 +0.4 0.9 hypothetical protein compare
Echvi_1280 +0.4 0.9 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_4244 +0.4 1.4 hypothetical protein compare
Echvi_1538 +0.4 2.7 hypothetical protein compare
Echvi_1227 +0.4 0.6 hypothetical protein compare
Echvi_0199 +0.4 2.8 hypothetical protein compare
Echvi_0086 +0.4 2.4 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_2402 +0.4 0.6 hypothetical protein compare
Echvi_3106 +0.4 1.9 Sugar phosphate permease compare
Echvi_0897 +0.4 1.1 hypothetical protein compare
Echvi_1821 +0.4 2.9 hypothetical protein compare
Echvi_1596 +0.4 1.2 Acyl dehydratase compare
Echvi_0754 +0.4 2.6 ATP-dependent chaperone ClpB compare
Echvi_2309 +0.4 2.9 Outer membrane protein/protective antigen OMA87 compare
Echvi_1185 +0.4 1.7 hypothetical protein compare
Echvi_1212 +0.4 2.6 Acyl-CoA dehydrogenases compare
Echvi_0622 +0.4 2.3 gliding motility-associated protein GldL compare
Echvi_1890 +0.4 2.2 molybdopterin molybdotransferase MoeA (EC 2.10.1.1) (from data) compare
Echvi_0523 +0.4 3.3 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_1389 +0.4 2.0 hypothetical protein compare
Echvi_3877 +0.4 1.6 single stranded DNA-binding protein (ssb) compare
Echvi_4356 +0.4 1.3 hypothetical protein compare
Echvi_3594 +0.4 1.0 hypothetical protein compare
Echvi_1224 +0.4 2.7 gliding motility-associated lipoprotein GldD compare
Echvi_3140 +0.4 1.4 single stranded DNA-binding protein (ssb) compare
Echvi_2701 +0.4 2.0 Pectate lyase compare
Echvi_3592 +0.4 2.4 Rhs element Vgr protein compare
Echvi_0521 +0.4 2.0 hypothetical protein compare
Echvi_0903 +0.4 2.1 Glycosyltransferases involved in cell wall biogenesis compare
Echvi_0621 +0.4 3.2 gliding motility-associated protein GldM compare
Echvi_1054 +0.4 1.6 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit compare
Echvi_0164 +0.4 2.8 Mannose-1-phosphate guanylyltransferase compare
Echvi_0082 +0.3 1.8 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_2371 +0.3 2.3 Sterol desaturase compare
Echvi_4456 +0.3 2.1 Transposase DDE domain. compare
Echvi_2230 +0.3 1.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
Echvi_2893 +0.3 1.1 hypothetical protein compare
Echvi_1899 +0.3 2.8 hypothetical protein compare
Echvi_1545 +0.3 1.7 alanine racemase compare
Echvi_1891 +0.3 1.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Echvi_3009 +0.3 1.7 TIGR00370 family protein compare
Echvi_4085 +0.3 1.1 hypothetical protein compare
Echvi_1190 +0.3 1.2 Membrane proteins related to metalloendopeptidases compare
Echvi_2128 +0.3 2.3 Small-conductance mechanosensitive channel compare
Echvi_3696 +0.3 1.4 hypothetical protein compare
Echvi_3240 +0.3 1.4 hypothetical protein compare
Echvi_0374 +0.3 2.2 Predicted membrane protein compare
Echvi_0655 +0.3 2.6 hypothetical protein compare
Echvi_1769 +0.3 1.4 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) compare
Echvi_3584 +0.3 1.7 hypothetical protein compare
Echvi_0904 +0.3 2.5 conserved hypothetical protein compare
Echvi_0135 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Echvi_4309 +0.3 1.4 hypothetical protein compare
Echvi_3956 +0.3 1.0 Transcriptional regulator compare
Echvi_0854 +0.3 1.0 hypothetical protein compare
Echvi_4665 +0.3 0.9 hypothetical protein compare
Echvi_2828 +0.3 1.9 Glycine/D-amino acid oxidases (deaminating) compare
Echvi_1979 +0.3 1.0 Bacterial mobilisation protein (MobC). compare
Echvi_0293 +0.3 0.7 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arabinose in Echinicola vietnamensis KMM 6221, DSM 17526

For carbon source L-Arabinose across organisms