Experiment set2IT076 for Agrobacterium fabrum C58

Compare to:

palatinose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu3754 -7.3 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -7.3 -7.1 3-isopropylmalate dehydrogenase compare
Atu2747 -7.1 -12.8 hypothetical protein compare
Atu1588 -7.1 -6.9 homoserine dehydrogenase compare
Atu1687 -7.0 -10.7 anthranilate phosphoribosyltransferase compare
Atu2289 -6.9 -14.8 anthranilate synthase component I and II compare
Atu2709 -6.9 -16.1 3-isopropylmalate dehydratase, large subunit compare
Atu0400 -6.9 -4.8 orotate phosphoribosyltransferase compare
Atu1205 -6.8 -10.5 threonine dehydratase compare
Atu0679 -6.8 -4.7 ATP phosphoribosyltransferase compare
Atu3706 -6.8 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu0486 -6.7 -6.5 dihydroorotate dehydrogenase compare
Atu2726 -6.7 -20.2 pyruvate carboxylase compare
Atu1307 -6.6 -6.5 dihydroorotase compare
Atu2264 -6.6 -12.0 2-isopropylmalate synthase compare
Atu0038 -6.6 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1308 -6.5 -7.7 aspartate carbamoyl transferase catalytic subunit compare
Atu3340 -6.4 -13.4 trehalose/maltose ABC transporter permease conserved
Atu2718 -6.3 -7.5 homoserine O-succinyltransferase compare
Atu3755 -6.3 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0099 -6.3 -12.0 prephenate dehydratase compare
Atu2036 -6.2 -15.5 acetolactate synthase III, large subunit compare
Atu3885 -6.2 -8.5 inositol monophosphatase compare
Atu0537 -6.2 -4.3 histidinol dehydrogenase compare
Atu1140 -6.1 -5.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu1750 -6.1 -5.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu3342 -6.0 -7.2 trehalose utilization-like protein compare
Atu1075 -5.8 -7.9 amidophosphoribosyltransferase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -5.8 -5.6 histidyl-tRNA synthetase compare
Atu3343 -5.7 -11.0 trehalose utilization-like protein conserved
Atu3783 -5.7 -16.9 glutamate synthase subunit beta compare
Atu1141 -5.7 -9.5 Phosphoribosylglycinamide synthetase compare
Atu2650 -5.7 -13.5 glycerol-3-phosphate dehydrogenase compare
Atu0432 -5.6 -10.1 O-succinylhomoserine sulfhydrylase compare
Atu1850 -5.5 -4.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -5.4 -2.9 phosphoglycerate kinase compare
Atu1844 -5.4 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3483 -5.3 -9.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0298 -5.2 -8.7 orotidine 5 compare
Atu2040 -5.2 -7.1 phosphoserine phosphatase compare
Atu3784 -5.2 -27.8 glutamate synthase large subunit compare
Atu0647 -5.2 -6.2 phosphoribosylamine--glycine ligase compare
Atu1688 -5.1 -6.2 indole-3-glycerol-phosphate synthase compare
Atu3482 -5.1 -11.5 pantoate--beta-alanine ligase compare
Atu2790 -5.1 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu3338 -5.0 -11.8 trehalose/maltose ABC transporter substrate-binding protein conserved
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu2015 -4.9 -15.6 aminotransferase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu3341 -4.8 -10.6 trehalose/maltose ABC transporter ATPase conserved
Atu1030 -4.8 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3731 -4.8 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu3339 -4.8 -13.3 trehalose/maltose ABC transporter permease conserved
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -4.7 -7.9 dihydroorotase compare
Atu1686 -4.5 -20.6 peptidyl-prolyl cis-trans isomerse D compare
Atu0641 -4.4 -5.1 hypothetical protein compare
Atu0598 -4.1 -12.1 phosphogluconate dehydratase compare
Atu1845 -4.1 -5.3 phosphoribosylformylglycinamidine synthase I compare
Atu0043 -4.0 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu0792 -3.8 -6.8 hypothetical protein compare
Atu1589 -3.8 -7.8 aminotransferase, class I compare
Atu2548 -3.8 -19.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1446 -3.7 -3.5 two component response regulator compare
Atu1456 -3.2 -13.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0723 -3.2 -2.2 FAD dependent oxidoreductase compare
Atu0030 -3.2 -2.6 phosphocarrier protein HPr compare
Atu2554 -3.0 -4.1 lysyl-tRNA synthetase compare
Atu2155 -2.9 -19.7 methionine synthase compare
Atu1462 -2.9 -16.2 glycine cleavage system protein P2 compare
Atu1464 -2.9 -9.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -2.9 -6.2 glycine cleavage system component H compare
Atu2205 -2.8 -10.0 transcriptional regulator, MarR family compare
Atu0029 -2.8 -5.9 S-adenosylhomocysteine hydrolase compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3999 -2.7 -5.2 dithiobiotin synthetase compare
Atu0401 -2.7 -4.8 fructokinase compare
Atu1454 -2.7 -8.4 siroheme synthase compare
Atu4098 -2.7 -14.0 quinolinate synthetase compare
Atu4096 -2.6 -11.6 nicotinate-nucleotide pyrophosphorylase compare
Atu3289 -2.4 -3.5 thiamine-phosphate pyrophosphorylase compare
Atu0769 -2.4 -2.9 protoheme IX farnesyltransferase compare
Atu1604 -2.4 -14.2 poly-beta-hydroxybutyrate synthase compare
Atu1359 -2.3 -1.9 dnaK deletion suppressor protein compare
Atu3997 -2.3 -14.5 biotin synthetase compare
Atu1748 -2.3 -9.1 NIFU-like protein compare
Atu1620 -2.3 -10.7 triosephosphate isomerase compare
Atu4000 -2.2 -13.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2127 -2.1 -10.9 L-carnitine dehydratase compare
Atu2569 -2.1 -13.2 thiamine biosynthesis protein compare
Atu4001 -2.0 -10.8 3-oxoacyl-ACP synthase compare
Atu0876 -2.0 -3.4 superoxide dismutase compare
Atu3998 -2.0 -12.0 8-amino-7-oxononanoate synthase compare
Atu4097 -2.0 -9.2 L-aspartate oxidase compare
Atu0184 -2.0 -3.0 glucokinase compare
Atu8115 -2.0 -4.7 Hypothetical Protein compare
Atu1685 -1.9 -1.7 hypothetical protein compare
Atu3288 -1.9 -8.1 hydroxyethylthiazole kinase compare
Atu1455 -1.9 -3.2 hypothetical protein compare
Atu2020 -1.9 -4.2 transcriptional regulator, TetR family compare
Atu3290 -1.8 -8.8 phosphomethylpyrimidine kinase compare
Atu4075 -1.7 -9.5 glycogen synthase compare
Atu0346 -1.6 -3.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu6114 -1.6 -1.7 hypothetical protein compare
Atu1572 -1.6 -6.1 hydrolase compare
Atu2799 -1.6 -5.9 precorrin-6x reductase compare
Atu1219 -1.6 -1.8 hypothetical protein compare
Atu0421 -1.6 -2.0 ABC transporter, membrane spanning protein compare
Atu1457 -1.6 -1.9 hypothetical protein compare
Atu3598 -1.5 -3.5 thiol:disulfide interchange protein compare
Atu0185 -1.5 -3.9 methylglyoxal synthase compare
Atu3712 -1.5 -2.5 hypothetical protein compare
Atu0422 -1.4 -2.6 ABC transporter, membrane spanning protein compare
Atu2209 -1.4 -3.0 pyrroline-5-carboxylate reductase compare
Atu5057 -1.3 -2.3 hypothetical protein compare
Atu4173 -1.3 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu0434 -1.3 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3908 -1.3 -7.2 GntR family transcriptional regulator compare
Atu3763 -1.3 -1.3 hypothetical protein compare
Atu2795 -1.3 -5.2 cobalamin biosynthetic protein compare
Atu0332 -1.3 -6.7 RNA polymerase sigma-54 factor compare
Atu2805 -1.2 -6.8 cobalamin synthesis protein compare
Atu5540 -1.2 -1.1 hypothetical protein compare
Atu4711 -1.2 -5.1 two component sensor kinase compare
Atu2770 -1.2 -4.2 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2808 -1.2 -6.0 cobyric acid synthase compare
Atu2809 -1.2 -6.3 cobalamin biosynthesis protein compare
Atu2793 -1.1 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu5125 -1.1 -3.6 GntR family transcriptional regulator compare
Atu2796 -1.1 -4.5 precorrin-4 C11-methyltransferase compare
Atu2804 -1.1 -7.0 cobaltochelatase subunit compare
Atu6165 -1.1 -1.2 hypothetical protein compare
Atu4773 -1.0 -1.7 two component response regulator compare
Atu2803 -1.0 -2.7 Cobalamin biosynthesis associated protein compare
Atu3496 -1.0 -3.8 hypothetical protein compare
Atu0677 -1.0 -1.7 hypothetical protein compare
Atu2123 -1.0 -3.4 methylenetetrahydrofolate reductase compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu2798 -0.9 -3.1 precorrin-6y methyltransferase compare
Atu4616 -0.9 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu2684 -0.9 -1.3 hypothetical protein compare
Atu2802 -0.9 -4.3 precorrin-8X methylmutase compare
Atu4502 -0.9 -4.8 cobalamin synthesis protein compare
Atu0939 -0.9 -2.6 PemI protein compare
Atu5142 -0.9 -1.3 hypothetical protein compare
Atu0189 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0590 -0.9 -3.4 transcriptional regulator repressor compare
Atu2800 -0.9 -2.2 precorrin-3B C17-methyltransferase compare
Atu2555 -0.8 -3.1 L-lysine 2,3-aminomutase compare
Atu0837 -0.8 -2.2 transcriptional regulator, MarR family compare
Atu3287 -0.8 -3.2 thiamine biosynthesis associated protein compare
Atu1891 -0.8 -2.7 cobalamin biosynthesis protein compare
Atu2335 -0.8 -1.4 hypothetical protein compare
Atu0188 -0.8 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2810 -0.8 -5.7 cobalamin biosynthetic protein compare
Atu1163 -0.8 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4161 -0.8 -1.8 hypothetical protein compare
Atu0291 -0.8 -4.0 hypothetical protein compare
Atu0977 -0.8 -2.4 serine protease DO-like protease compare
Atu2801 -0.8 -2.4 precorrin-2 C20 methyltransferase compare
Atu8191 -0.8 -1.7 hypothetical protein compare
Atu0106 -0.8 -2.0 cold shock protein compare
Atu2640 -0.8 -2.2 hypothetical protein compare
Atu3750 -0.8 -1.5 thiamine-phosphate pyrophosphorylase compare
Atu4477 -0.8 -4.3 TetR family transcriptional regulator compare
Atu1542 -0.8 -3.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4187 -0.8 -1.4 tRNA-Met compare
Atu2807 -0.7 -3.4 cob(I)alamin adenosyltransferase compare
Atu8052 -0.7 -1.1 hypothetical protein compare
Atu2484 -0.7 -1.4 hypothetical protein compare
Atu6098 -0.7 -0.6 transcriptional regulator, HTH family compare
Atu2746 -0.7 -2.6 hypothetical protein compare
Atu0502 -0.7 -3.9 acetyl-CoA acetyltransferase compare
Atu0354 -0.7 -1.6 ferric uptake regulator compare
Atu0601 -0.7 -4.6 oxidoreductase compare
Atu3485 -0.7 -4.1 short chain dehydrogenase compare
Atu3336 -0.7 -2.0 hypothetical protein compare
Atu1028 -0.7 -1.6 hypothetical protein compare
Atu2821 -0.7 -3.7 transcriptional regulator, GntR family compare
Atu1774 -0.7 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu1285 -0.7 -2.9 metal dependent hydrolase compare
Atu1076 -0.7 -2.8 colicin V production protein compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu3732 -0.7 -4.7 hemolysin compare
Atu4317 -0.7 -2.1 TetR family transcriptional regulator compare
Atu5157 -0.7 -2.7 hypothetical protein compare
Atu1667 -0.7 -1.4 hypothetical protein compare
Atu1469 -0.7 -1.3 hypothetical protein compare
Atu1754 -0.6 -1.9 hypothetical protein compare
Atu1445 -0.6 -2.3 two component sensor kinase compare
Atu1364 -0.6 -2.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4144 -0.6 -0.9 hypothetical protein compare
Atu0981 -0.6 -4.6 glutamate-ammonia-ligase adenylyltransferase compare
Atu0340 -0.6 -1.2 SAM dependent methyltransferase compare
Atu0886 -0.6 -1.0 hypothetical protein compare
Atu3623 -0.6 -1.3 DnaJ family molecular chaperone compare
Atu1705 -0.6 -2.0 SEC-independent protein translocase protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source palatinose hydrate in Agrobacterium fabrum C58

For carbon source palatinose hydrate across organisms