Experiment set2IT075 for Pseudomonas simiae WCS417

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.2 -4.9 isopropylmalate isomerase compare
PS417_27040 -6.4 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_04415 -6.0 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -6.0 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01575 -5.9 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23805 -5.9 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -5.6 -16.2 anthranilate synthase component I compare
PS417_24745 -5.6 -3.9 gamma-glutamyl phosphate reductase compare
PS417_20125 -5.6 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_23800 -5.6 -9.3 ketol-acid reductoisomerase compare
PS417_26740 -5.3 -9.1 homoserine acetyltransferase compare
PS417_00185 -5.3 -5.1 tryptophan synthase subunit beta compare
PS417_18595 -5.2 -6.2 3-isopropylmalate dehydratase compare
PS417_01855 -5.2 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_02510 -5.2 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_16465 -5.0 -9.6 sirohydrochlorin ferrochelatase compare
PS417_04420 -4.9 -11.8 histidinol dehydrogenase compare
PS417_01850 -4.9 -8.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18585 -4.9 -6.6 3-isopropylmalate dehydrogenase compare
PS417_23810 -4.9 -15.2 acetolactate synthase 3 catalytic subunit compare
PS417_18530 -4.8 -7.3 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.7 -6.9 methionine biosynthesis protein MetW compare
PS417_27795 -4.6 -2.1 orotate phosphoribosyltransferase compare
PS417_20985 -4.5 -4.3 porin compare
PS417_23545 -4.5 -4.3 gamma-glutamyl kinase compare
PS417_05595 -4.4 -8.9 ornithine carbamoyltransferase compare
PS417_26890 -4.4 -8.2 dihydroxy-acid dehydratase compare
PS417_08125 -4.2 -1.9 prephenate dehydratase compare
PS417_01605 -4.1 -2.8 phosphoglycerate mutase compare
PS417_01570 -3.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12290 -3.9 -9.0 sulfite reductase compare
PS417_26995 -3.9 -11.5 phosphoserine phosphatase compare
PS417_02415 -3.9 -8.2 phosphoserine phosphatase compare
PS417_25715 -3.8 -5.1 anthranilate phosphoribosyltransferase compare
PS417_12855 -3.8 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27835 -3.7 -5.9 endoribonuclease compare
PS417_25720 -3.7 -5.7 anthranilate synthase component II compare
PS417_27195 -3.7 -2.2 N-acetylglutamate synthase compare
PS417_23995 -3.5 -1.6 preprotein translocase subunit SecG compare
PS417_01580 -3.4 -1.9 imidazole glycerol phosphate synthase compare
PS417_00180 -3.4 -4.0 tryptophan synthase subunit alpha compare
PS417_01560 -3.3 -3.9 imidazoleglycerol-phosphate dehydratase compare
PS417_24155 -3.2 -4.3 ATP-binding protein compare
PS417_26730 -3.1 -2.0 pyrroline-5-carboxylate reductase compare
PS417_25710 -2.9 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_01565 -2.7 -2.7 imidazole glycerol phosphate synthase compare
PS417_20160 -2.7 -3.2 cysteine synthase compare
PS417_23110 -2.6 -4.6 2-isopropylmalate synthase compare
PS417_07640 -2.5 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_06375 -2.4 -1.9 deoxycytidine triphosphate deaminase compare
PS417_08245 -2.2 -2.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_17070 -1.8 -2.3 RNA polymerase subunit sigma-24 compare
PS417_24835 -1.7 -6.0 hypothetical protein compare
PS417_26725 -1.7 -3.6 hypothetical protein compare
PS417_05455 -1.6 -6.4 XRE family transcriptional regulator compare
PS417_08220 -1.6 -1.4 epimerase compare
PS417_23770 -1.6 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_22520 -1.5 -2.4 histidine kinase compare
PS417_23775 -1.4 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_18590 -1.4 -3.1 SAM-dependent methyltransferase compare
PS417_14075 -1.3 -2.6 hypothetical protein compare
PS417_07170 -1.3 -3.2 hypothetical protein compare
PS417_01095 -1.2 -2.2 amino acid ABC transporter ATP-binding protein compare
PS417_02555 -1.2 -9.6 exoribonuclease R compare
PS417_19600 -1.2 -1.2 exonuclease compare
PS417_21630 -1.1 -2.7 magnesium transporter compare
PS417_14980 -1.1 -1.4 universal stress protein UspA compare
PS417_07010 -1.1 -3.1 pseudouridine synthase compare
PS417_21125 -1.0 -4.5 phosphoadenosine phosphosulfate reductase compare
PS417_08155 -1.0 -2.3 integration host factor subunit beta compare
PS417_08225 -1.0 -4.0 acetolactate synthase compare
PS417_03260 -1.0 -1.9 5S ribosomal RNA compare
PS417_25985 -0.9 -2.0 dethiobiotin synthetase compare
PS417_23915 -0.9 -4.6 pantoate--beta-alanine ligase compare
PS417_08230 -0.9 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23950 -0.9 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_20030 -0.9 -3.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_04425 -0.9 -4.6 histidinol-phosphate aminotransferase compare
PS417_14200 -0.9 -2.2 hypothetical protein compare
PS417_08025 -0.9 -1.6 acetylornithine aminotransferase compare
PS417_08195 -0.8 -4.5 hypothetical protein compare
PS417_08130 -0.8 -1.4 aspartate aminotransferase compare
PS417_16490 -0.8 -1.6 cell division protein FtsK compare
PS417_13165 -0.8 -1.8 peroxidase compare
PS417_08335 -0.8 -1.3 hypothetical protein compare
PS417_05555 -0.8 -2.4 amino acid ABC transporter permease compare
PS417_28515 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_22330 -0.8 -3.1 arginine deiminase compare
PS417_08540 -0.8 -2.4 RNA helicase compare
PS417_21655 -0.8 -1.0 aspartate kinase compare
PS417_21360 -0.8 -1.1 termination factor Rho compare
PS417_08250 -0.8 -1.7 competence protein ComEA compare
PS417_08730 -0.8 -1.7 cytochrome C compare
PS417_05985 -0.8 -2.7 chemotaxis protein CheY compare
PS417_02770 -0.8 -2.6 membrane protein compare
PS417_01210 -0.8 -4.8 hypothetical protein compare
PS417_14140 -0.8 -1.6 membrane protein compare
PS417_23380 -0.8 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_20665 -0.7 -2.9 hypothetical protein compare
PS417_19620 -0.7 -1.6 hypothetical protein compare
PS417_24290 -0.7 -2.8 hypothetical protein compare
PS417_12390 -0.7 -1.0 hypothetical protein compare
PS417_16320 -0.7 -1.3 protein tyrosine phosphatase compare
PS417_13255 -0.7 -1.8 ABC transporter compare
PS417_08410 -0.7 -1.5 hypothetical protein compare
PS417_04365 -0.7 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27585 -0.7 -1.8 diaminopimelate epimerase compare
PS417_06945 -0.7 -1.3 membrane protein compare
PS417_05560 -0.7 -2.0 ABC transporter compare
PS417_12280 -0.7 -1.5 MerR family transcriptional regulator compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_16065 -0.7 -1.7 3-phytase compare
PS417_18400 -0.7 -2.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_02365 -0.7 -1.9 hypothetical protein compare
PS417_26850 -0.7 -0.8 twin-arginine translocation pathway signal protein compare
PS417_13055 -0.7 -1.5 aminotransferase compare
PS417_04380 -0.7 -1.1 ABC transporter permease compare
PS417_05840 -0.6 -1.5 LuxR family transcriptional regulator compare
PS417_10010 -0.6 -1.9 Replication protein P compare
PS417_15750 -0.6 -1.4 protease compare
PS417_24370 -0.6 -0.8 (2Fe-2S)-binding protein compare
PS417_13730 -0.6 -1.6 hypothetical protein compare
PS417_16275 -0.6 -1.7 hypothetical protein compare
PS417_14890 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_22570 -0.6 -0.8 H-NS histone compare
PS417_22565 -0.6 -0.9 formyltetrahydrofolate deformylase compare
PS417_21285 -0.6 -2.5 hypothetical protein compare
PS417_06880 -0.6 -1.8 RNA polymerase sigma factor compare
PS417_17795 -0.6 -1.1 ABC transporter permease compare
PS417_23385 -0.6 -3.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_16045 -0.6 -1.9 acyl-CoA dehydrogenase compare
PS417_23855 -0.6 -1.4 ABC transporter substrate-binding protein compare
PS417_04585 -0.6 -1.1 hypothetical protein compare
PS417_11400 -0.6 -0.7 phosphoglycerate mutase compare
PS417_08205 -0.6 -1.8 acetyltransferase compare
PS417_07305 -0.6 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_13185 -0.6 -1.1 RND transporter compare
PS417_23250 -0.6 -3.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_21900 -0.6 -2.5 allophanate hydrolase compare
PS417_27010 -0.6 -4.0 threonine dehydratase compare
PS417_20515 -0.6 -2.4 FMN-dependent NADH-azoreductase compare
PS417_26390 -0.6 -1.0 acyltransferase compare
PS417_17645 -0.6 -1.0 RND transporter compare
PS417_27975 -0.6 -2.3 type VI secretion protein compare
PS417_17565 -0.6 -1.3 branched-chain amino acid aminotransferase compare
PS417_27005 -0.6 -0.8 membrane protein compare
PS417_21430 -0.6 -1.5 3-oxoacyl-ACP synthase compare
PS417_23390 -0.6 -3.1 ubiquinol oxidase subunit II compare
PS417_06965 -0.6 -2.3 cysteine methyltransferase compare
PS417_01825 -0.6 -1.6 chemotaxis protein compare
PS417_05130 -0.6 -1.8 glutaredoxin compare
PS417_03385 -0.6 -1.0 flavin reductase compare
PS417_26155 -0.6 -1.9 hypothetical protein compare
PS417_08350 -0.5 -1.5 preprotein translocase subunit TatD compare
PS417_28140 -0.5 -1.8 asparaginase compare
PS417_20610 -0.5 -0.8 hypothetical protein compare
PS417_05815 -0.5 -2.1 recombinase RecA compare
PS417_10320 -0.5 -1.2 hypothetical protein compare
PS417_23900 -0.5 -3.8 poly(A) polymerase compare
PS417_19955 -0.5 -1.4 hypothetical protein compare
PS417_00175 -0.5 -0.8 CigR compare
PS417_22445 -0.5 -1.5 ATP-dependent DNA helicase RuvB compare
PS417_02980 -0.5 -1.0 chemotaxis protein compare
PS417_14455 -0.5 -1.2 polyketide cyclase compare
PS417_16560 -0.5 -1.2 GNAT family acetyltransferase compare
PS417_12480 -0.5 -3.0 peptidase C39 compare
PS417_15725 -0.5 -1.9 nitrate/nitrite transporter NarK compare
PS417_23015 -0.5 -2.0 NGG1p interacting factor 3 protein, NIF3 compare
PS417_17855 -0.5 -2.0 major facilitator transporter compare
PS417_21705 -0.5 -2.2 arginine N-succinyltransferase compare
PS417_22385 -0.5 -3.7 quinolinate synthase A compare
PS417_11405 -0.5 -1.9 precorrin 6A synthase compare
PS417_08685 -0.5 -1.2 flagellar hook-length control protein FliK compare
PS417_00455 -0.5 -1.1 hypothetical protein compare
PS417_25055 -0.5 -1.5 transposase compare
PS417_23370 -0.5 -1.5 protoheme IX farnesyltransferase compare
PS417_22450 -0.5 -0.5 ATP-dependent DNA helicase RuvA compare
PS417_19240 -0.5 -1.6 peptidase M42 compare
PS417_08770 -0.5 -1.9 hypothetical protein compare
PS417_06095 -0.5 -1.3 energy transducer TonB compare
PS417_18225 -0.5 -2.6 phenol degradation protein meta compare
PS417_07275 -0.5 -1.6 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_01620 -0.5 -1.9 preprotein translocase subunit SecB compare
PS417_16995 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_12325 -0.5 -2.5 precorrin-4 C11-methyltransferase compare
PS417_12355 -0.5 -1.3 magnesium chelatase compare
PS417_08680 -0.5 -1.2 flagellar biosynthesis protein FlhB compare
PS417_15035 -0.5 -0.9 alkylhydroperoxidase compare
PS417_08135 -0.5 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16180 -0.5 -1.8 MFS transporter compare
PS417_27875 -0.5 -3.2 histidine kinase compare
PS417_09200 -0.5 -1.6 ABC transporter compare
PS417_00975 -0.5 -0.8 hypothetical protein compare
PS417_08625 -0.5 -2.0 membrane protein compare
PS417_06075 -0.5 -1.0 hypothetical protein compare
PS417_02765 -0.5 -1.1 phosphate starvation-inducible protein PsiF compare
PS417_12515 -0.5 -1.2 lactate dehydrogenase compare
PS417_17980 -0.5 -1.3 ABC transporter permease compare
PS417_05025 -0.5 -1.1 maleylacetoacetate isomerase compare
PS417_02425 -0.5 -2.3 thiosulfate sulfurtransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source L-Asparagine across organisms