Experiment set2IT074 for Pseudomonas simiae WCS417

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.6 -4.5 3-phosphoglycerate dehydrogenase compare
PS417_01705 -5.6 -10.8 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
PS417_24745 -5.0 -5.9 gamma-glutamyl phosphate reductase compare
PS417_25725 -4.9 -18.6 anthranilate synthase component I compare
PS417_27795 -4.8 -2.3 orotate phosphoribosyltransferase compare
PS417_25720 -4.7 -9.4 anthranilate synthase component II compare
PS417_26740 -4.6 -13.9 homoserine acetyltransferase compare
PS417_00180 -4.6 -3.1 tryptophan synthase subunit alpha compare
PS417_18560 -4.3 -13.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18600 -4.2 -5.6 isopropylmalate isomerase compare
PS417_01720 -4.2 -13.6 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
PS417_23545 -4.1 -3.6 gamma-glutamyl kinase compare
PS417_23800 -4.0 -14.6 ketol-acid reductoisomerase compare
PS417_01750 -4.0 -3.7 histidine ammonia-lyase compare
PS417_23810 -4.0 -15.3 acetolactate synthase 3 catalytic subunit compare
PS417_00185 -3.9 -6.5 tryptophan synthase subunit beta compare
PS417_26745 -3.9 -5.0 methionine biosynthesis protein MetW compare
PS417_25710 -3.9 -2.6 indole-3-glycerol-phosphate synthase compare
PS417_12855 -3.9 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27195 -3.9 -2.4 N-acetylglutamate synthase compare
PS417_20160 -3.8 -3.9 cysteine synthase compare
PS417_25715 -3.8 -6.2 anthranilate phosphoribosyltransferase compare
PS417_23805 -3.8 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_05595 -3.6 -8.2 ornithine carbamoyltransferase compare
PS417_23110 -3.6 -15.2 2-isopropylmalate synthase compare
PS417_01760 -3.5 -4.4 imidazolonepropionase compare
PS417_02415 -3.4 -6.3 phosphoserine phosphatase compare
PS417_01605 -3.4 -3.2 phosphoglycerate mutase compare
PS417_18585 -3.4 -8.0 3-isopropylmalate dehydrogenase compare
PS417_18530 -3.3 -6.3 O-succinylhomoserine sulfhydrylase compare
PS417_20985 -3.3 -4.5 porin compare
PS417_27835 -3.3 -10.5 endoribonuclease compare
PS417_16465 -3.3 -9.8 sirohydrochlorin ferrochelatase compare
PS417_26730 -3.2 -2.2 pyrroline-5-carboxylate reductase compare
PS417_06375 -3.1 -2.1 deoxycytidine triphosphate deaminase compare
PS417_24155 -3.1 -4.1 ATP-binding protein compare
PS417_07640 -2.9 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_12290 -2.8 -9.6 sulfite reductase compare
PS417_26040 -2.8 -4.8 malate synthase compare
PS417_26890 -2.6 -7.1 dihydroxy-acid dehydratase compare
PS417_18690 -2.5 -5.6 aromatic amino acid aminotransferase compare
PS417_22565 -2.5 -2.3 formyltetrahydrofolate deformylase compare
PS417_18595 -2.5 -4.1 3-isopropylmalate dehydratase compare
PS417_05815 -2.4 -6.6 recombinase RecA compare
PS417_08230 -2.3 -2.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22445 -2.3 -5.6 ATP-dependent DNA helicase RuvB compare
PS417_20610 -2.3 -2.6 hypothetical protein compare
PS417_01715 -2.3 -2.6 hypothetical protein compare
PS417_08125 -2.2 -1.8 prephenate dehydratase compare
PS417_23770 -2.1 -3.6 exodeoxyribonuclease V subunit alpha compare
PS417_27435 -2.1 -8.6 polyphosphate kinase compare
PS417_24835 -2.1 -3.6 hypothetical protein compare
PS417_27305 -2.0 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_24765 -1.8 -5.6 membrane protein compare
PS417_21750 -1.8 -13.3 acetyl-CoA synthetase compare
PS417_12310 -1.8 -8.6 methionine synthase compare
PS417_27870 -1.8 -4.8 ATP-dependent DNA helicase RecG compare
PS417_16570 -1.7 -10.1 isocitrate lyase compare
PS417_00190 -1.7 -5.1 LysR family transcriptional regulator conserved
PS417_01270 -1.6 -3.4 iron ABC transporter substrate-binding protein compare
PS417_26510 -1.6 -8.5 5,10-methylenetetrahydrofolate reductase compare
PS417_26175 -1.6 -1.6 sarcosine oxidase subunit gamma compare
PS417_01950 -1.5 -6.5 malate dehydrogenase compare
PS417_02555 -1.5 -11.3 exoribonuclease R compare
PS417_21705 -1.4 -3.9 arginine N-succinyltransferase compare
PS417_08225 -1.4 -4.2 acetolactate synthase compare
PS417_22990 -1.4 -1.4 iron dicitrate transport regulator FecR compare
PS417_27010 -1.4 -7.5 threonine dehydratase compare
PS417_24710 -1.3 -8.6 lipoprotein compare
PS417_24370 -1.3 -1.4 (2Fe-2S)-binding protein compare
PS417_23690 -1.3 -5.2 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
PS417_15465 -1.3 -2.6 carboxynorspermidine decarboxylase compare
PS417_08245 -1.2 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21125 -1.2 -7.0 phosphoadenosine phosphosulfate reductase compare
PS417_22570 -1.2 -1.5 H-NS histone compare
PS417_08205 -1.2 -4.0 acetyltransferase compare
PS417_07170 -1.2 -2.3 hypothetical protein compare
PS417_06245 -1.2 -2.7 zinc metallopeptidase RseP compare
PS417_11180 -1.2 -3.0 TetR family transcriptional regulator compare
PS417_22450 -1.2 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_03925 -1.2 -4.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_26725 -1.1 -3.2 hypothetical protein compare
PS417_23775 -1.1 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_27875 -1.1 -6.8 histidine kinase compare
PS417_01725 -1.1 -2.1 sulfonate ABC transporter substrate-binding protein compare
PS417_05975 -1.1 -1.0 chemotaxis protein CheW compare
PS417_08200 -1.1 -2.5 hypothetical protein compare
PS417_15750 -1.1 -2.0 protease compare
PS417_24810 -1.1 -6.3 aldehyde dehydrogenase compare
PS417_08670 -1.1 -4.2 molybdopterin biosynthesis protein B compare
PS417_08195 -1.0 -5.6 hypothetical protein compare
PS417_07470 -1.0 -1.5 hypothetical protein compare
PS417_00510 -1.0 -1.6 membrane protein compare
PS417_23950 -1.0 -3.4 polynucleotide phosphorylase/polyadenylase compare
PS417_22385 -1.0 -6.2 quinolinate synthase A compare
PS417_21480 -1.0 -1.9 23S rRNA pseudouridylate synthase compare
PS417_21395 -1.0 -5.2 radical SAM protein compare
PS417_01755 -1.0 -2.4 proline-specific permease compare
PS417_06500 -0.9 -1.3 hypothetical protein compare
PS417_20030 -0.9 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_12355 -0.9 -1.5 magnesium chelatase compare
PS417_27690 -0.9 -3.5 XRE family transcriptional regulator compare
PS417_16715 -0.9 -1.4 DoxX family protein compare
PS417_26990 -0.9 -1.7 RNA pyrophosphohydrolase compare
PS417_05200 -0.9 -2.5 DNA recombination protein RecO compare
PS417_00175 -0.9 -1.4 CigR compare
PS417_15215 -0.9 -1.6 protein activator of alkane oxidation PraA compare
PS417_11485 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_23900 -0.9 -5.4 poly(A) polymerase compare
PS417_01265 -0.8 -5.6 CbbBc protein compare
PS417_08665 -0.8 -3.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_15915 -0.8 -1.5 hypothetical protein compare
PS417_14200 -0.8 -2.3 hypothetical protein compare
PS417_26030 -0.8 -5.6 chloramphenical resistance permease RarD compare
PS417_27595 -0.8 -2.1 recombinase XerC compare
PS417_03145 -0.8 -2.1 acetyl-CoA acetyltransferase compare
PS417_17855 -0.8 -3.1 major facilitator transporter compare
PS417_07000 -0.8 -1.8 hypothetical protein compare
PS417_00565 -0.8 -1.7 NAD(P) transhydrogenase compare
PS417_02720 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_14075 -0.8 -1.5 hypothetical protein compare
PS417_16005 -0.8 -2.6 ATPase compare
PS417_14235 -0.8 -1.7 hypothetical protein compare
PS417_18590 -0.8 -1.4 SAM-dependent methyltransferase compare
PS417_08220 -0.8 -0.9 epimerase compare
PS417_26220 -0.8 -2.3 Rieske (2Fe-2S) protein compare
PS417_13165 -0.8 -2.2 peroxidase compare
PS417_06945 -0.8 -1.5 membrane protein compare
PS417_25940 -0.8 -3.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_21210 -0.8 -2.1 amidotransferase compare
PS417_00085 -0.8 -2.5 16S rRNA methyltransferase compare
PS417_20635 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_18755 -0.7 -2.0 CrtK compare
PS417_06200 -0.7 -3.0 protein-PII uridylyltransferase compare
PS417_09160 -0.7 -1.4 GNAT family acetyltransferase compare
PS417_20665 -0.7 -3.4 hypothetical protein compare
PS417_01995 -0.7 -2.0 hypothetical protein compare
PS417_11845 -0.7 -2.2 RpiR family transcriptional regulator compare
PS417_09440 -0.7 -2.0 MerR family transcriptional regulator compare
PS417_24630 -0.7 -3.4 ATP-binding protein compare
PS417_19600 -0.7 -1.0 exonuclease compare
PS417_02690 -0.7 -2.9 N-acylglucosamine 2-epimerase compare
PS417_17490 -0.7 -1.7 ABC transporter ATP-binding protein compare
PS417_11770 -0.7 -1.6 pyruvate dehydrogenase compare
PS417_08430 -0.7 -3.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_08770 -0.7 -1.8 hypothetical protein compare
PS417_12565 -0.7 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_04865 -0.7 -3.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_20620 -0.7 -2.7 glycosyl transferase family 2 compare
PS417_24800 -0.7 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_05165 -0.7 -2.2 cytosol aminopeptidase compare
PS417_04860 -0.7 -4.1 ATPase compare
PS417_15370 -0.7 -2.1 kinase compare
PS417_19430 -0.7 -2.2 ureidoglycolate hydrolase compare
PS417_05560 -0.7 -1.1 ABC transporter compare
PS417_23715 -0.7 -2.1 cupin compare
PS417_17565 -0.7 -1.4 branched-chain amino acid aminotransferase compare
PS417_24585 -0.7 -5.0 AMP nucleosidase compare
PS417_27515 -0.7 -3.0 heme biosynthesis protein HemY compare
PS417_02475 -0.7 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_07305 -0.7 -1.8 3-beta hydroxysteroid dehydrogenase compare
PS417_01735 -0.6 -2.4 ABC transporter permease compare
PS417_04180 -0.6 -2.7 GntR family transcriptional regulator compare
PS417_19400 -0.6 -2.8 amino acid transporter LysE compare
PS417_07420 -0.6 -1.7 restriction endonuclease compare
PS417_19625 -0.6 -2.4 histidine kinase compare
PS417_14655 -0.6 -1.0 lysine transporter LysE compare
PS417_09210 -0.6 -1.0 TetR family transcriptional regulator compare
PS417_17610 -0.6 -0.9 AsnC family transcriptional regulator compare
PS417_10575 -0.6 -1.1 DNA alkylation repair protein compare
PS417_12390 -0.6 -1.4 hypothetical protein compare
PS417_05455 -0.6 -2.5 XRE family transcriptional regulator compare
PS417_05105 -0.6 -2.1 membrane protein compare
PS417_05550 -0.6 -2.9 amino acid ABC transporter permease compare
PS417_08540 -0.6 -2.1 RNA helicase compare
PS417_22680 -0.6 -2.3 chemotaxis protein CheY compare
PS417_28510 -0.6 -2.7 chromosome partitioning protein compare
PS417_03705 -0.6 -1.3 2-alkenal reductase compare
PS417_05025 -0.6 -1.8 maleylacetoacetate isomerase compare
PS417_24785 -0.6 -1.1 nucleoside-diphosphate sugar epimerase compare
PS417_04050 -0.6 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_01210 -0.6 -3.3 hypothetical protein compare
PS417_08130 -0.6 -1.3 aspartate aminotransferase compare
PS417_24805 -0.6 -3.2 Fis family transcriptional regulator compare
PS417_23705 -0.6 -2.1 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) compare
PS417_23695 -0.6 -2.3 electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) compare
PS417_22230 -0.6 -3.1 class I peptide chain release factor compare
PS417_23310 -0.6 -2.0 glyoxalase compare
PS417_19805 -0.6 -2.2 flagellar M-ring protein FliF compare
PS417_07195 -0.6 -1.6 hypothetical protein compare
PS417_16100 -0.6 -1.8 antibiotic biosynthesis monooxygenase compare
PS417_26645 -0.6 -1.8 chemotaxis protein compare
PS417_15935 -0.6 -1.3 Rrf2 family transcriptional regulator compare
PS417_03435 -0.6 -3.0 cytochrome P450 compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_06895 -0.5 -1.7 DNA-binding protein compare
PS417_20800 -0.5 -3.3 recombination protein RecR compare
PS417_14425 -0.5 -1.9 alkylhydroperoxidase compare
PS417_00660 -0.5 -1.9 DSBA oxidoreductase compare
PS417_05905 -0.5 -1.1 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Histidine in Pseudomonas simiae WCS417

For carbon source L-Histidine across organisms