Experiment set2IT074 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Tetracycline hydrochloride 0.003 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_01820 +4.0 13.6 hypothetical protein compare
CA264_07665 +3.4 24.9 sulfurtransferase compare
CA264_03635 +3.3 13.0 DoxX family protein compare
CA264_07660 +3.2 20.1 hypothetical protein compare
CA264_07185 +3.2 10.8 TetR family transcriptional regulator compare
CA264_05400 +2.7 11.4 MarR family transcriptional regulator compare
CA264_03640 +2.5 6.6 TetR family transcriptional regulator compare
CA264_01810 +2.4 6.9 hypothetical protein compare
CA264_07670 +2.4 18.3 hypothetical protein compare
CA264_13100 +2.2 4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_01815 +2.2 3.9 N-acetyltransferase compare
CA264_00015 +2.1 9.8 hypothetical protein compare
CA264_13495 +2.1 10.1 aldehyde dehydrogenase compare
CA264_19005 +2.0 14.9 SusC/RagA family TonB-linked outer membrane protein compare
CA264_01800 +1.7 8.1 gluconate kinase compare
CA264_06345 +1.7 14.4 hypothetical protein compare
CA264_01805 +1.7 3.1 6-phosphogluconate dehydrogenase (decarboxylating) compare
CA264_03630 +1.6 9.7 PAS domain-containing sensor histidine kinase compare
CA264_01790 +1.5 3.9 hypothetical protein compare
CA264_04495 +1.5 8.8 histidine kinase compare
CA264_11970 +1.5 2.7 hypothetical protein compare
CA264_19925 +1.5 8.9 peptidyl-prolyl cis-trans isomerase compare
CA264_07190 +1.4 4.8 hypothetical protein compare
CA264_12310 +1.4 1.9 NifU family protein compare
CA264_00565 +1.4 1.9 hypothetical protein compare
CA264_13505 +1.4 5.4 hypothetical protein compare
CA264_13015 +1.4 8.7 sensor histidine kinase compare
CA264_16760 +1.3 11.2 hypothetical protein compare
CA264_16330 +1.3 6.1 hypothetical protein compare
CA264_03625 +1.3 8.2 proline iminopeptidase compare
CA264_10855 +1.3 1.7 cell division protein compare
CA264_04985 +1.3 8.7 hypothetical protein compare
CA264_00725 +1.3 5.2 pyruvate kinase compare
CA264_11015 +1.2 8.9 hypothetical protein compare
CA264_06990 +1.2 9.4 PA-phosphatase compare
CA264_04605 +1.2 9.0 hypothetical protein compare
CA264_00295 +1.2 3.6 hypothetical protein compare
CA264_13500 +1.2 5.6 hypothetical protein compare
CA264_16980 +1.2 4.6 thiol reductase thioredoxin compare
CA264_15160 +1.2 5.0 nucleoside triphosphate pyrophosphohydrolase compare
CA264_14965 +1.2 7.8 glycosyltransferase WbuB compare
CA264_00280 +1.2 8.0 DegT/DnrJ/EryC1/StrS aminotransferase compare
CA264_08105 +1.2 6.1 NupC/NupG family nucleoside CNT transporter compare
CA264_14890 +1.2 1.9 triose-phosphate isomerase compare
CA264_01795 +1.2 5.8 hypothetical protein compare
CA264_20120 +1.2 2.0 hypothetical protein compare
CA264_18695 +1.1 8.4 glycogen synthase compare
CA264_16680 +1.1 9.5 hypothetical protein compare
CA264_01370 +1.1 10.1 hypothetical protein compare
CA264_11975 +1.1 2.5 hypothetical protein compare
CA264_00570 +1.1 3.9 methionine--tRNA ligase compare
CA264_11010 +1.1 9.7 hypothetical protein compare
CA264_05650 +1.0 5.3 tryptophan 2,3-dioxygenase compare
CA264_19125 +1.0 2.0 hypothetical protein compare
CA264_19685 +1.0 0.8 DNA-binding response regulator compare
CA264_11135 +1.0 2.6 DUF2179 domain-containing protein compare
CA264_03600 +1.0 6.1 ATP-dependent helicase HrpB compare
CA264_07730 +1.0 4.9 pyrroline-5-carboxylate reductase compare
CA264_17320 +1.0 8.6 hypothetical protein compare
CA264_14125 +1.0 5.9 endonuclease V compare
CA264_04340 +1.0 8.1 hypothetical protein compare
CA264_14550 +1.0 9.2 cell surface protein SprA compare
CA264_03905 +1.0 3.4 polysaccharide deacetylase family protein compare
CA264_16590 +1.0 2.9 site-2 protease family protein compare
CA264_18060 +1.0 4.7 hypothetical protein compare
CA264_07720 +1.0 7.6 gamma-glutamyl-phosphate reductase compare
CA264_07000 +1.0 6.2 DUF4833 domain-containing protein compare
CA264_13470 +1.0 1.3 cysteine synthase A compare
CA264_17050 +1.0 9.1 hypothetical protein compare
CA264_01725 +1.0 2.3 NADH-quinone oxidoreductase subunit K compare
CA264_13115 +1.0 7.1 proline dehydrogenase compare
CA264_03810 +1.0 2.8 hypothetical protein compare
CA264_14995 +1.0 5.1 A/G-specific adenine glycosylase compare
CA264_08140 +1.0 5.0 oxidoreductase compare
CA264_14115 +1.0 4.8 hydrolase compare
CA264_04895 +1.0 5.8 peptidase M23 compare
CA264_04600 +0.9 7.7 hypothetical protein compare
CA264_17845 +0.9 6.7 GNAT family N-acetyltransferase compare
CA264_03870 +0.9 5.0 transcription elongation factor GreA compare
CA264_00660 +0.9 5.6 hypothetical protein compare
CA264_00945 +0.9 4.8 acyl-CoA reductase compare
CA264_15230 +0.9 6.2 hypothetical protein compare
CA264_02575 +0.9 2.8 potassium transporter KefB compare
CA264_13030 +0.9 2.9 cysteine methyltransferase compare
CA264_15880 +0.9 1.5 5-formyltetrahydrofolate cyclo-ligase compare
CA264_18475 +0.9 4.2 very short patch repair endonuclease compare
CA264_10950 +0.9 3.4 phenylacetate-CoA oxygenase subunit PaaI compare
CA264_14200 +0.9 1.1 NADH-quinone oxidoreductase subunit A compare
CA264_13510 +0.9 5.6 hypothetical protein compare
CA264_02720 +0.9 5.8 peroxiredoxin compare
CA264_07725 +0.9 6.3 glutamate 5-kinase compare
CA264_19210 +0.9 5.3 SAM-dependent methyltransferase compare
CA264_19970 +0.9 2.2 hypothetical protein compare
CA264_18005 +0.9 4.7 3-hydroxyanthranilate 3,4-dioxygenase compare
CA264_04730 +0.8 4.1 uracil-DNA glycosylase compare
CA264_07705 +0.8 3.1 hypothetical protein compare
CA264_01905 +0.8 3.9 cystathionine beta-synthase compare
CA264_09265 +0.8 6.1 XRE family transcriptional regulator compare
CA264_15290 +0.8 6.1 alpha/beta hydrolase compare
CA264_18055 +0.8 6.3 hypothetical protein compare
CA264_01990 +0.8 2.1 tRNA-Lys compare
CA264_06600 +0.8 4.9 glycosyltransferase compare
CA264_19055 +0.8 3.6 epimerase compare
CA264_12515 +0.8 3.3 YebC/PmpR family DNA-binding transcriptional regulator compare
CA264_11295 +0.8 5.5 hypothetical protein compare
CA264_15785 +0.8 1.9 hypothetical protein compare
CA264_04350 +0.8 4.6 alanine dehydrogenase compare
CA264_14190 +0.8 2.6 hypothetical protein compare
CA264_14105 +0.8 6.6 T9SS C-terminal target domain-containing protein compare
CA264_06460 +0.8 3.3 NUDIX domain-containing protein compare
CA264_15990 +0.8 4.0 DoxX family protein compare
CA264_17020 +0.8 4.0 methyltransferase type 11 compare
CA264_01785 +0.8 3.9 hypothetical protein compare
CA264_00455 +0.8 4.6 PorT-like protein compare
CA264_06630 +0.8 2.3 hypothetical protein compare
CA264_08145 +0.8 5.0 deoxyribodipyrimidine photo-lyase compare
CA264_15845 +0.8 2.5 hypothetical protein compare
CA264_07020 +0.8 4.5 phosphatidylglycerophosphatase A compare
CA264_12415 +0.8 6.3 hypothetical protein compare
CA264_13025 +0.8 2.9 hypothetical protein compare
CA264_07850 +0.8 2.9 hypothetical protein compare
CA264_14120 +0.8 3.6 hypothetical protein compare
CA264_05785 +0.8 1.3 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA264_04585 +0.8 5.7 hypothetical protein compare
CA264_11805 +0.8 6.1 thioesterase compare
CA264_17860 +0.8 4.6 tRNA dihydrouridine synthase DusB compare
CA264_12430 +0.8 4.6 nucleotidyltransferase compare
CA264_20595 +0.8 5.3 acyl-CoA desaturase compare
CA264_05005 +0.7 6.1 colicin receptor compare
CA264_09125 +0.7 5.8 glucose/galactose MFS transporter compare
CA264_00040 +0.7 5.3 hypothetical protein compare
CA264_00070 +0.7 5.2 hypothetical protein compare
CA264_21300 +0.7 0.8 hypothetical protein compare
CA264_10805 +0.7 1.9 NADPH-dependent oxidoreductase compare
CA264_03760 +0.7 5.2 hypothetical protein compare
CA264_02740 +0.7 4.5 hypothetical protein compare
CA264_13020 +0.7 1.6 hypothetical protein compare
CA264_11655 +0.7 1.0 hypothetical protein compare
CA264_00090 +0.7 6.1 histidine kinase compare
CA264_16335 +0.7 2.7 hypothetical protein compare
CA264_00655 +0.7 4.0 tRNA-guanine(34) transglycosylase compare
CA264_05645 +0.7 3.3 L-serine dehydratase, iron-sulfur-dependent subunit beta compare
CA264_11800 +0.7 5.4 aerotolerance protein compare
CA264_03910 +0.7 4.4 family 2 glycosyl transferase compare
CA264_14835 +0.7 5.5 hypothetical protein compare
CA264_10285 +0.7 1.7 hypothetical protein compare
CA264_04595 +0.7 5.6 hypothetical protein compare
CA264_13515 +0.7 2.8 glyoxalase/bleomycin resistance/dioxygenase family protein compare
CA264_19010 +0.7 5.3 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_02580 +0.7 2.2 transcriptional regulator compare
CA264_07685 +0.7 2.8 aminotransferase class I and II compare
CA264_15215 +0.7 4.8 hypothetical protein compare
CA264_15490 +0.7 4.2 hypothetical protein compare
CA264_14635 +0.7 4.2 hypothetical protein compare
CA264_13340 +0.7 1.8 iron-sulfur cluster assembly accessory protein compare
CA264_02220 +0.7 5.3 signal peptide peptidase SppA compare
CA264_19860 +0.7 3.0 NifU family protein compare
CA264_16410 +0.7 4.8 hypothetical protein compare
CA264_12755 +0.7 3.2 SAM-dependent methyltransferase compare
CA264_07285 +0.7 5.4 alpha-amlyase compare
CA264_01445 +0.7 1.4 hypothetical protein compare
CA264_14935 +0.7 2.2 sec-independent protein translocase TatC compare
CA264_17905 +0.7 3.9 UDP-glucose 4-epimerase GalE compare
CA264_20330 +0.7 4.2 hypothetical protein compare
CA264_21540 +0.7 3.2 hypothetical protein compare
CA264_05830 +0.6 1.1 hypothetical protein compare
CA264_09545 +0.6 1.3 hypothetical protein compare
CA264_06140 +0.6 3.3 MerR family transcriptional regulator compare
CA264_01720 +0.6 3.7 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
CA264_01735 +0.6 2.9 oxidoreductase compare
CA264_04575 +0.6 5.5 glycosyltransferase compare
CA264_17965 +0.6 4.2 hypothetical protein compare
CA264_16385 +0.6 3.2 DUF4271 domain-containing protein compare
CA264_18470 +0.6 4.3 peptidase M28 compare
CA264_10580 +0.6 1.6 hypothetical protein compare
CA264_01705 +0.6 4.0 NADH-quinone oxidoreductase subunit H compare
CA264_19555 +0.6 3.8 GNAT family N-acetyltransferase compare
CA264_13865 +0.6 1.2 hypothetical protein compare
CA264_17270 +0.6 5.1 hypothetical protein compare
CA264_14840 +0.6 5.2 hypothetical protein compare
CA264_00560 +0.6 2.6 hypothetical protein compare
CA264_15850 +0.6 2.9 IclR family transcriptional regulator compare
CA264_12350 +0.6 4.1 glycosyltransferase family 1 protein compare
CA264_01985 +0.6 0.8 tRNA-Lys compare
CA264_20070 +0.6 4.2 hypothetical protein compare
CA264_11795 +0.6 3.7 aerotolerance regulator BatB compare
CA264_13775 +0.6 4.7 hypothetical protein compare
CA264_14110 +0.6 2.1 phosphoribosyltransferase compare
CA264_02150 +0.6 3.2 hypothetical protein compare
CA264_10945 +0.6 3.0 phenylacetic acid degradation b compare
CA264_20265 +0.6 2.9 hypothetical protein compare
CA264_03025 +0.6 4.3 T9SS C-terminal target domain-containing protein compare
CA264_00275 +0.6 3.7 hypothetical protein compare
CA264_05335 +0.6 3.6 Nif3-like dinuclear metal center hexameric protein compare
CA264_15270 +0.6 2.6 glutamyl-tRNA amidotransferase compare
CA264_15690 +0.6 2.3 hypothetical protein compare
CA264_18260 +0.6 2.6 NADH-quinone oxidoreductase subunit C compare
CA264_18215 +0.6 1.9 hypothetical protein compare
CA264_17780 +0.6 2.4 hypothetical protein compare
CA264_02155 +0.6 3.8 peptidase M23 compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Tetracycline hydrochloride across organisms