Experiment set2IT073 for Pseudomonas simiae WCS417

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.5 -5.2 isopropylmalate isomerase compare
PS417_07640 -6.7 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18560 -6.6 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04415 -6.0 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -5.9 -16.1 anthranilate synthase component I compare
PS417_23800 -5.8 -10.4 ketol-acid reductoisomerase compare
PS417_27040 -5.7 -5.6 3-phosphoglycerate dehydrogenase compare
PS417_01575 -5.6 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -5.6 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_00185 -5.5 -5.4 tryptophan synthase subunit beta compare
PS417_23805 -5.3 -7.0 acetolactate synthase 3 regulatory subunit compare
PS417_21690 -5.3 -7.2 N-succinylarginine dihydrolase compare
PS417_04420 -5.3 -11.7 histidinol dehydrogenase compare
PS417_26740 -5.3 -11.7 homoserine acetyltransferase compare
PS417_01850 -5.1 -9.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18585 -5.1 -7.7 3-isopropylmalate dehydrogenase compare
PS417_23810 -5.0 -14.1 acetolactate synthase 3 catalytic subunit compare
PS417_18530 -5.0 -8.3 O-succinylhomoserine sulfhydrylase compare
PS417_01855 -4.8 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_16465 -4.7 -11.0 sirohydrochlorin ferrochelatase compare
PS417_00180 -4.6 -3.1 tryptophan synthase subunit alpha compare
PS417_18595 -4.5 -3.7 3-isopropylmalate dehydratase compare
PS417_23110 -4.3 -8.0 2-isopropylmalate synthase compare
PS417_25715 -4.2 -7.5 anthranilate phosphoribosyltransferase compare
PS417_20125 -4.1 -6.7 phosphoribosylglycinamide formyltransferase compare
PS417_21710 -4.1 -6.9 Succinylornithine transaminase (EC 2.6.1.81) (from data) conserved
PS417_21700 -4.0 -4.0 arginine N-succinyltransferase compare
PS417_26745 -4.0 -4.5 methionine biosynthesis protein MetW compare
PS417_12855 -3.9 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25710 -3.9 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_20985 -3.9 -3.8 porin compare
PS417_24155 -3.9 -3.7 ATP-binding protein compare
PS417_12290 -3.9 -9.9 sulfite reductase compare
PS417_21745 -3.7 -10.8 ABC transporter for L-Arginine, substrate-binding component (from data) conserved
PS417_23995 -3.6 -1.6 preprotein translocase subunit SecG compare
PS417_21680 -3.6 -4.1 succinylglutamate desuccinylase compare
PS417_01580 -3.5 -1.9 imidazole glycerol phosphate synthase compare
PS417_21740 -3.5 -9.1 ABC transporter for L-Arginine, permease component 1 (from data) conserved
PS417_27795 -3.5 -2.2 orotate phosphoribosyltransferase compare
PS417_06375 -3.4 -2.1 deoxycytidine triphosphate deaminase compare
PS417_01565 -3.4 -3.6 imidazole glycerol phosphate synthase compare
PS417_26995 -3.2 -11.7 phosphoserine phosphatase compare
PS417_08125 -3.1 -1.9 prephenate dehydratase compare
PS417_21655 -3.0 -1.5 aspartate kinase compare
PS417_26040 -3.0 -4.3 malate synthase compare
PS417_01605 -2.9 -2.7 phosphoglycerate mutase compare
PS417_26985 -2.8 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26890 -2.8 -5.1 dihydroxy-acid dehydratase compare
PS417_21735 -2.8 -11.9 ABC transporter for L-Arginine, permease component 2 (from data) conserved
PS417_02415 -2.7 -7.5 phosphoserine phosphatase compare
PS417_21705 -2.6 -6.1 arginine N-succinyltransferase compare
PS417_20160 -2.6 -4.0 cysteine synthase compare
PS417_01570 -2.4 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25720 -2.1 -4.8 anthranilate synthase component II compare
PS417_18690 -2.1 -5.6 aromatic amino acid aminotransferase compare
PS417_24710 -2.0 -7.3 lipoprotein compare
PS417_01560 -1.8 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_23900 -1.8 -10.9 poly(A) polymerase compare
PS417_02555 -1.8 -13.8 exoribonuclease R compare
PS417_27140 -1.7 -5.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
PS417_24835 -1.7 -4.2 hypothetical protein compare
PS417_08225 -1.6 -6.5 acetolactate synthase compare
PS417_08730 -1.6 -2.1 cytochrome C compare
PS417_16570 -1.6 -9.5 isocitrate lyase compare
PS417_27585 -1.6 -3.6 diaminopimelate epimerase compare
PS417_26990 -1.6 -2.3 RNA pyrophosphohydrolase compare
PS417_17415 -1.5 -3.7 histidine kinase compare
PS417_16490 -1.5 -3.2 cell division protein FtsK compare
PS417_20665 -1.4 -6.4 hypothetical protein compare
PS417_27290 -1.4 -2.5 hypothetical protein compare
PS417_08155 -1.4 -2.7 integration host factor subunit beta compare
PS417_27435 -1.4 -5.0 polyphosphate kinase compare
PS417_17460 -1.4 -10.0 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_21750 -1.3 -10.8 acetyl-CoA synthetase compare
PS417_04410 -1.3 -1.8 hypothetical protein compare
PS417_23775 -1.3 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_21695 -1.3 -1.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_24935 -1.3 -1.2 hypothetical protein compare
PS417_21625 -1.3 -1.6 DNA-binding protein compare
PS417_08230 -1.2 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07560 -1.2 -1.9 universal stress protein UspA compare
PS417_17475 -1.2 -6.1 histidine kinase compare
PS417_00045 -1.2 -3.1 glycerol acyltransferase compare
PS417_08245 -1.2 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_26730 -1.2 -1.4 pyrroline-5-carboxylate reductase compare
PS417_08200 -1.2 -3.7 hypothetical protein compare
PS417_14980 -1.2 -1.7 universal stress protein UspA compare
PS417_08205 -1.2 -3.6 acetyltransferase compare
PS417_22385 -1.2 -8.7 quinolinate synthase A compare
PS417_22450 -1.1 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_15465 -1.1 -3.1 carboxynorspermidine decarboxylase compare
PS417_22445 -1.1 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_27835 -1.1 -4.3 endoribonuclease compare
PS417_21510 -1.1 -1.4 histidine kinase compare
PS417_17455 -1.1 -2.9 cytochrome C compare
PS417_23315 -1.0 -1.7 transcriptional regulator compare
PS417_02485 -1.0 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20610 -1.0 -1.3 hypothetical protein compare
PS417_04180 -1.0 -4.0 GntR family transcriptional regulator compare
PS417_26725 -1.0 -4.1 hypothetical protein compare
PS417_25645 -1.0 -4.6 peptidase M23 compare
PS417_17420 -1.0 -4.5 ethanol oxidation regulatory protein ercA (from data) compare
PS417_08025 -1.0 -1.5 acetylornithine aminotransferase compare
PS417_13800 -1.0 -1.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_24535 -0.9 -2.3 membrane protein compare
PS417_17470 -0.9 -2.2 LuxR family transcriptional regulator compare
PS417_22570 -0.9 -1.2 H-NS histone compare
PS417_04650 -0.9 -1.2 D-alanine--D-alanine ligase compare
PS417_14835 -0.9 -2.7 amidase compare
PS417_13255 -0.9 -1.3 ABC transporter compare
PS417_10535 -0.9 -2.7 hypothetical protein compare
PS417_03705 -0.9 -2.1 2-alkenal reductase compare
PS417_24745 -0.9 -2.8 gamma-glutamyl phosphate reductase compare
PS417_08195 -0.9 -5.4 hypothetical protein compare
PS417_08220 -0.9 -1.0 epimerase compare
PS417_06500 -0.8 -1.3 hypothetical protein compare
PS417_24810 -0.8 -5.2 aldehyde dehydrogenase compare
PS417_23770 -0.8 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_27010 -0.8 -5.5 threonine dehydratase compare
PS417_19600 -0.8 -1.5 exonuclease compare
PS417_04875 -0.8 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00375 -0.8 -2.7 membrane protein compare
PS417_00390 -0.8 -3.9 ABC transporter substrate-binding protein compare
PS417_03925 -0.8 -5.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_24575 -0.8 -1.3 hypothetical protein compare
PS417_04860 -0.8 -5.1 ATPase compare
PS417_09325 -0.8 -3.9 peptidase S41 compare
PS417_09160 -0.8 -2.2 GNAT family acetyltransferase compare
PS417_13820 -0.8 -3.1 UDP-glucose 6-dehydrogenase compare
PS417_17505 -0.8 -1.5 LuxR family transcriptional regulator compare
PS417_00380 -0.8 -2.6 zinc ABC transporter ATP-binding protein compare
PS417_21210 -0.8 -1.3 amidotransferase compare
PS417_21125 -0.8 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_06730 -0.8 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_15750 -0.8 -1.4 protease compare
PS417_07575 -0.8 -2.0 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27195 -0.8 -1.6 N-acetylglutamate synthase compare
PS417_20620 -0.7 -3.3 glycosyl transferase family 2 compare
PS417_12870 -0.7 -1.2 enoyl-CoA hydratase compare
PS417_15875 -0.7 -1.7 LuxR family transcriptional regulator compare
PS417_04185 -0.7 -2.4 hypothetical protein compare
PS417_04365 -0.7 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_05905 -0.7 -0.8 hypothetical protein compare
PS417_18310 -0.7 -1.9 hypothetical protein compare
PS417_13445 -0.7 -1.3 D-aminopeptidase compare
PS417_05165 -0.7 -2.1 cytosol aminopeptidase compare
PS417_02765 -0.7 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_05105 -0.7 -2.0 membrane protein compare
PS417_07010 -0.7 -1.9 pseudouridine synthase compare
PS417_06530 -0.7 -2.0 membrane protein compare
PS417_18235 -0.7 -1.7 nitrile hydratase compare
PS417_01095 -0.7 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_16005 -0.7 -2.5 ATPase compare
PS417_14295 -0.7 -1.8 AraC family transcriptional regulator compare
PS417_01435 -0.7 -1.1 hypothetical protein compare
PS417_19625 -0.7 -2.5 histidine kinase compare
PS417_02020 -0.7 -3.0 LysR family transcriptional regulator compare
PS417_12310 -0.7 -4.1 methionine synthase compare
PS417_23950 -0.7 -2.1 polynucleotide phosphorylase/polyadenylase compare
PS417_27870 -0.7 -2.4 ATP-dependent DNA helicase RecG compare
PS417_27745 -0.7 -2.6 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_23205 -0.7 -1.4 transcriptional regulator compare
PS417_15085 -0.7 -2.7 ATPase AAA compare
PS417_02720 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_08540 -0.7 -2.3 RNA helicase compare
PS417_01195 -0.7 -2.3 RNA-binding protein S4 compare
PS417_17565 -0.6 -1.9 branched-chain amino acid aminotransferase compare
PS417_21725 -0.6 -1.0 amino acid transporter compare
PS417_03005 -0.6 -3.7 arginine decarboxylase compare
PS417_08425 -0.6 -3.5 acetyltransferase compare
PS417_25940 -0.6 -3.3 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_02705 -0.6 -1.6 urease accessory protein UreF compare
PS417_18205 -0.6 -1.6 aldehyde dehydrogenase compare
PS417_02800 -0.6 -1.6 acetyltransferase compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_07120 -0.6 -2.5 RNA polymerase sigma-H factor compare
PS417_27300 -0.6 -0.9 cell division protein ZapA compare
PS417_13165 -0.6 -2.1 peroxidase compare
PS417_24630 -0.6 -1.6 ATP-binding protein compare
PS417_03725 -0.6 -3.1 acyltransferase compare
PS417_15470 -0.6 -2.7 saccharopine dehydrogenase compare
PS417_01995 -0.6 -1.9 hypothetical protein compare
PS417_11615 -0.6 -1.2 urea ABC transporter ATP-binding protein compare
PS417_12565 -0.6 -1.4 2-dehydro-3-deoxygluconokinase compare
PS417_01290 -0.6 -1.3 ADP-ribose diphosphatase compare
PS417_18010 -0.6 -2.0 acid phosphatase compare
PS417_05065 -0.6 -1.3 hypothetical protein compare
PS417_13710 -0.6 -1.5 hypothetical protein compare
PS417_27305 -0.6 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_01710 -0.6 -2.6 histidine utilization repressor compare
PS417_27035 -0.6 -2.4 FAD-linked oxidase compare
PS417_08365 -0.6 -0.7 hypothetical protein compare
PS417_04960 -0.6 -1.0 hypothetical protein compare
PS417_01920 -0.6 -1.5 ATP-dependent protease subunit HslV compare
PS417_03300 -0.6 -2.4 alanine acetyltransferase compare
PS417_01950 -0.5 -2.9 malate dehydrogenase compare
PS417_08135 -0.5 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04375 -0.5 -1.9 ABC transporter ATP-binding protein compare
PS417_02950 -0.5 -1.1 tRNA-dihydrouridine synthase B compare
PS417_26815 -0.5 -1.4 peptidase M16 compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Arginine in Pseudomonas simiae WCS417

For carbon source L-Arginine across organisms