Experiment set2IT073 for Agrobacterium fabrum C58

Compare to:

Cellohexaose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.4 -10.2 anthranilate phosphoribosyltransferase compare
Atu1588 -6.5 -9.9 homoserine dehydrogenase compare
Atu0679 -6.4 -6.3 ATP phosphoribosyltransferase compare
Atu2709 -6.4 -18.6 3-isopropylmalate dehydratase, large subunit compare
Atu3706 -6.4 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu0432 -6.3 -10.8 O-succinylhomoserine sulfhydrylase compare
Atu2726 -6.2 -23.3 pyruvate carboxylase compare
Atu3707 -6.2 -4.3 phosphoserine aminotransferase compare
Atu2791 -6.1 -9.4 3-isopropylmalate dehydrogenase compare
Atu0099 -6.1 -13.6 prephenate dehydratase compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2264 -6.0 -14.4 2-isopropylmalate synthase compare
Atu2289 -6.0 -20.1 anthranilate synthase component I and II compare
Atu3783 -5.9 -17.9 glutamate synthase subunit beta compare
Atu1205 -5.8 -16.3 threonine dehydratase compare
Atu2040 -5.8 -5.6 phosphoserine phosphatase compare
Atu0400 -5.8 -6.8 orotate phosphoribosyltransferase compare
Atu0537 -5.7 -6.8 histidinol dehydrogenase compare
Atu1750 -5.6 -6.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu1688 -5.6 -6.7 indole-3-glycerol-phosphate synthase compare
Atu3784 -5.5 -29.3 glutamate synthase large subunit compare
Atu3739 -5.5 -3.0 phosphoglycerate kinase compare
Atu0184 -5.5 -3.8 glucokinase compare
Atu1140 -5.5 -6.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3885 -5.5 -9.8 inositol monophosphatase compare
Atu2036 -5.4 -17.4 acetolactate synthase III, large subunit compare
Atu2718 -5.4 -10.4 homoserine O-succinyltransferase compare
Atu0678 -5.4 -6.4 histidyl-tRNA synthetase compare
Atu1844 -5.3 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2790 -5.3 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu0038 -5.2 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu0039 -5.0 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1308 -5.0 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1030 -5.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0399 -4.9 -8.2 dihydroorotase compare
Atu2747 -4.9 -12.0 hypothetical protein compare
Atu1307 -4.8 -9.9 dihydroorotase compare
Atu3754 -4.7 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0486 -4.7 -7.8 dihydroorotate dehydrogenase compare
Atu3755 -4.7 -7.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1845 -4.5 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu1141 -4.4 -6.0 Phosphoribosylglycinamide synthetase compare
Atu1075 -4.3 -7.9 amidophosphoribosyltransferase compare
Atu0792 -4.2 -8.8 hypothetical protein compare
Atu0647 -4.1 -7.9 phosphoribosylamine--glycine ligase compare
Atu0298 -4.0 -9.0 orotidine 5 compare
Atu1850 -3.9 -5.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2650 -3.8 -12.2 glycerol-3-phosphate dehydrogenase compare
Atu2015 -3.7 -12.8 aminotransferase compare
Atu3482 -3.6 -8.4 pantoate--beta-alanine ligase compare
Atu1686 -3.6 -18.7 peptidyl-prolyl cis-trans isomerse D compare
Atu4075 -3.6 -11.1 glycogen synthase compare
Atu0185 -3.5 -8.7 methylglyoxal synthase compare
Atu0641 -3.4 -5.8 hypothetical protein compare
Atu1589 -3.4 -11.8 aminotransferase, class I compare
Atu0030 -3.4 -2.8 phosphocarrier protein HPr compare
Atu2548 -3.2 -16.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3483 -3.1 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0598 -3.1 -9.5 phosphogluconate dehydratase compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0723 -2.9 -2.8 FAD dependent oxidoreductase compare
Atu3469 -2.6 -4.2 phosphoglyceromutase compare
Atu3731 -2.5 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu6098 -2.5 -1.1 transcriptional regulator, HTH family compare
Atu1359 -2.4 -2.0 dnaK deletion suppressor protein compare
Atu3999 -2.3 -4.8 dithiobiotin synthetase compare
Atu2155 -2.3 -16.7 methionine synthase compare
Atu3997 -2.3 -12.8 biotin synthetase compare
Atu1455 -2.3 -5.3 hypothetical protein compare
Atu4371 -2.2 -10.4 sugar ABC transporter permease compare
Atu1454 -2.2 -10.5 siroheme synthase compare
Atu1456 -2.2 -11.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0434 -2.2 -4.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4217 -2.2 -1.8 TetR family transcriptional regulator compare
Atu0876 -2.2 -2.3 superoxide dismutase compare
Atu4372 -2.1 -10.0 ribose ABC transporter permease compare
Atu0029 -2.1 -6.2 S-adenosylhomocysteine hydrolase compare
Atu3998 -2.1 -11.9 8-amino-7-oxononanoate synthase compare
Atu1446 -2.0 -3.0 two component response regulator compare
Atu1463 -2.0 -6.8 glycine cleavage system component H compare
Atu6114 -2.0 -2.5 hypothetical protein compare
Atu1462 -1.9 -12.5 glycine cleavage system protein P2 compare
Atu4000 -1.9 -12.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4001 -1.9 -10.0 3-oxoacyl-ACP synthase compare
Atu0031 -1.9 -2.2 PTS system, IIA component compare
Atu1464 -1.9 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu4375 -1.9 -12.2 hypothetical protein compare
Atu5173 -1.9 -2.4 dehydrogenase compare
Atu2127 -1.9 -7.2 L-carnitine dehydratase compare
Atu4370 -1.9 -10.3 sugar ABC transporter ATPase compare
Atu3008 -1.8 -1.5 hypothetical protein compare
Atu8115 -1.8 -4.7 Hypothetical Protein compare
Atu1604 -1.8 -12.9 poly-beta-hydroxybutyrate synthase compare
Atu2205 -1.8 -6.6 transcriptional regulator, MarR family compare
Atu6189 -1.7 -1.4 protein secretion chaperone compare
Atu1891 -1.7 -5.0 cobalamin biosynthesis protein compare
Atu3290 -1.7 -8.5 phosphomethylpyrimidine kinase compare
Atu2569 -1.7 -10.3 thiamine biosynthesis protein compare
Atu1219 -1.7 -1.9 hypothetical protein compare
Atu4096 -1.7 -5.9 nicotinate-nucleotide pyrophosphorylase compare
Atu0501 -1.6 -11.7 acyl-CoA dehydrogenase compare
Atu4369 -1.6 -7.5 sugar ABC transporter substrate-binding protein compare
Atu4098 -1.6 -9.5 quinolinate synthetase compare
Atu3288 -1.6 -6.9 hydroxyethylthiazole kinase compare
Atu1774 -1.6 -8.0 ABC transporter, substrate binding protein (peptide) compare
Atu0502 -1.6 -6.0 acetyl-CoA acetyltransferase compare
Atu1620 -1.5 -9.1 triosephosphate isomerase compare
Atu4097 -1.5 -9.8 L-aspartate oxidase compare
Atu3289 -1.5 -3.9 thiamine-phosphate pyrophosphorylase compare
Atu2821 -1.5 -6.4 transcriptional regulator, GntR family compare
Atu3908 -1.5 -9.2 GntR family transcriptional regulator compare
Atu4773 -1.5 -1.3 two component response regulator compare
Atu2209 -1.5 -3.2 pyrroline-5-carboxylate reductase compare
Atu4374 -1.4 -5.4 hypothetical protein compare
Atu0026 -1.4 -1.3 hypothetical protein compare
Atu0503 -1.4 -10.4 enoyl-CoA hydratase compare
Atu4373 -1.4 -6.5 LacI family transcriptional regulator compare
Atu1526 -1.4 -7.8 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu1748 -1.4 -8.5 NIFU-like protein compare
Atu3496 -1.4 -4.8 hypothetical protein compare
Atu0405 -1.3 -9.8 long-chain-fatty-acid-CoA-ligase compare
Atu2640 -1.2 -3.5 hypothetical protein compare
Atu5106 -1.2 -2.2 DNA binding protein compare
Atu2770 -1.2 -6.7 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3598 -1.2 -2.0 thiol:disulfide interchange protein compare
Atu0769 -1.2 -1.4 protoheme IX farnesyltransferase compare
Atu2808 -1.2 -5.7 cobyric acid synthase compare
Atu2239 -1.2 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2803 -1.2 -4.5 Cobalamin biosynthesis associated protein compare
Atu1445 -1.2 -3.4 two component sensor kinase compare
Atu2237 -1.1 -5.4 cytochrome c1 compare
Atu0189 -1.1 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0190 -1.1 -5.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2787 -1.1 -1.4 hypothetical protein compare
Atu2797 -1.1 -1.8 cobalamin biosynthesis protein compare
Atu1847 -1.1 -2.0 hypothetical protein compare
Atu2267 -1.1 -6.9 hypothetical protein compare
Atu0601 -1.0 -6.3 oxidoreductase compare
Atu0332 -1.0 -5.7 RNA polymerase sigma-54 factor compare
Atu0188 -1.0 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3343 -1.0 -5.1 trehalose utilization-like protein compare
Atu1572 -1.0 -4.0 hydrolase compare
Atu0346 -1.0 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3485 -1.0 -5.9 short chain dehydrogenase compare
Atu2123 -1.0 -3.1 methylenetetrahydrofolate reductase compare
Atu8162 -0.9 -1.6 hypothetical protein compare
Atu0592 -0.9 -5.5 ABC transporter, membrane spanning protein compare
Atu1542 -0.9 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2125 -0.9 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2554 -0.9 -1.7 lysyl-tRNA synthetase compare
Atu2793 -0.9 -3.6 cobyrinic acid a,c-diamide synthase compare
Atu2798 -0.9 -3.6 precorrin-6y methyltransferase compare
Atu3794 -0.9 -5.0 FadR family transcriptional regulator compare
Atu3012 -0.9 -1.3 hypothetical protein compare
Atu1163 -0.9 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0331 -0.9 -2.1 sigma-54 modulation protein compare
Atu5443 -0.9 -2.8 TetR family transcriptional regulator compare
Atu1457 -0.9 -1.9 hypothetical protein compare
Atu1685 -0.9 -1.1 hypothetical protein compare
Atu4173 -0.9 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu2020 -0.9 -3.4 transcriptional regulator, TetR family compare
Atu2801 -0.9 -3.7 precorrin-2 C20 methyltransferase compare
Atu2124 -0.9 -3.8 transcriptional regulator, ArsR family compare
Atu2511 -0.9 -5.0 D-alanine aminotransferase compare
Atu2795 -0.9 -3.8 cobalamin biosynthetic protein compare
Atu2083 -0.9 -1.8 DNA repair protein RecN compare
Atu3240 -0.9 -5.7 ROK family transcriptional regulator compare
Atu0602 -0.9 -4.6 glutamine synthetase compare
Atu2802 -0.9 -4.0 precorrin-8X methylmutase compare
Atu2796 -0.9 -3.6 precorrin-4 C11-methyltransferase compare
Atu0701 -0.8 -5.2 GGDEF family protein compare
Atu2799 -0.8 -3.0 precorrin-6x reductase compare
Atu2809 -0.8 -5.8 cobalamin biosynthesis protein compare
Atu0977 -0.8 -3.8 serine protease DO-like protease compare
Atu0590 -0.8 -4.3 transcriptional regulator repressor compare
Atu4187 -0.8 -1.4 tRNA-Met compare
Atu4711 -0.8 -2.8 two component sensor kinase compare
Atu2800 -0.8 -2.2 precorrin-3B C17-methyltransferase compare
Atu5142 -0.8 -1.2 hypothetical protein compare
Atu3732 -0.8 -4.7 hemolysin compare
Atu1364 -0.8 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu2207 -0.8 -1.8 two component sensor kinase compare
Atu0354 -0.8 -1.5 ferric uptake regulator compare
Atu2428 -0.8 -4.6 exopolysaccharide production protein PssB compare
Atu3162 -0.8 -4.7 LacI family transcriptional regulator compare
Atu1285 -0.8 -3.9 metal dependent hydrolase compare
Atu0981 -0.8 -5.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu2804 -0.8 -4.8 cobaltochelatase subunit compare
Atu1546 -0.8 -3.9 transcriptional regulator, MerR family compare
Atu4884 -0.8 -2.5 hypothetical protein compare
Atu1258 -0.7 -2.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu0912 -0.7 -1.4 Na+/H+ antiporter compare
Atu3750 -0.7 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu1904 -0.7 -1.6 transcriptional regulator compare
Atu2805 -0.7 -3.4 cobalamin synthesis protein compare
Atu2807 -0.7 -2.8 cob(I)alamin adenosyltransferase compare
Atu4317 -0.7 -3.0 TetR family transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Cellohexaose in Agrobacterium fabrum C58

For carbon source Cellohexaose across organisms