Experiment set2IT072 for Pseudomonas simiae WCS417

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.6 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -6.3 -4.3 LysR family transcriptional regulator compare
PS417_18600 -6.2 -5.6 isopropylmalate isomerase compare
PS417_23805 -5.8 -6.9 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.5 -11.3 ketol-acid reductoisomerase compare
PS417_01575 -5.5 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18560 -5.5 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01565 -5.4 -6.2 imidazole glycerol phosphate synthase compare
PS417_18585 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
PS417_23045 -5.4 -5.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) conserved
PS417_18530 -5.4 -7.8 O-succinylhomoserine sulfhydrylase compare
PS417_25720 -5.3 -8.8 anthranilate synthase component II compare
PS417_04420 -5.3 -12.7 histidinol dehydrogenase compare
PS417_18595 -5.2 -4.0 3-isopropylmalate dehydratase compare
PS417_26740 -5.1 -14.1 homoserine acetyltransferase compare
PS417_25725 -5.1 -16.5 anthranilate synthase component I compare
PS417_00185 -5.0 -6.0 tryptophan synthase subunit beta compare
PS417_16465 -4.9 -12.0 sirohydrochlorin ferrochelatase compare
PS417_23810 -4.8 -14.2 acetolactate synthase 3 catalytic subunit compare
PS417_23545 -4.8 -4.6 gamma-glutamyl kinase compare
PS417_24745 -4.7 -7.2 gamma-glutamyl phosphate reductase compare
PS417_04415 -4.6 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -4.5 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_02005 -4.5 -10.7 glutamate synthase compare
PS417_01850 -4.4 -11.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12855 -4.4 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02510 -4.3 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23050 -4.1 -6.5 trehalose PTS system, EII-BC components TreB (from data) conserved
PS417_26745 -4.0 -6.1 methionine biosynthesis protein MetW compare
PS417_25710 -4.0 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_02000 -3.9 -12.2 glutamate synthase compare
PS417_12290 -3.9 -11.2 sulfite reductase compare
PS417_27195 -3.8 -2.1 N-acetylglutamate synthase compare
PS417_25715 -3.8 -6.7 anthranilate phosphoribosyltransferase compare
PS417_05595 -3.7 -8.0 ornithine carbamoyltransferase compare
PS417_22685 -3.6 -18.2 Glucokinase (EC 2.7.1.2) (from data) conserved
PS417_23995 -3.6 -1.5 preprotein translocase subunit SecG compare
PS417_27795 -3.6 -2.1 orotate phosphoribosyltransferase compare
PS417_01605 -3.5 -3.3 phosphoglycerate mutase compare
PS417_06375 -3.5 -2.1 deoxycytidine triphosphate deaminase compare
PS417_23040 -3.4 -12.4 D-trehalose outer membrane porin (from data) conserved
PS417_23110 -3.4 -7.4 2-isopropylmalate synthase compare
PS417_23035 -3.4 -6.5 D-trehalose PTS system, I, HPr, and IIA components (from data) conserved
PS417_08125 -3.3 -1.9 prephenate dehydratase compare
PS417_00180 -3.3 -3.7 tryptophan synthase subunit alpha compare
PS417_26890 -3.3 -6.1 dihydroxy-acid dehydratase compare
PS417_26730 -3.2 -1.9 pyrroline-5-carboxylate reductase compare
PS417_01580 -3.2 -2.4 imidazole glycerol phosphate synthase compare
PS417_26995 -3.2 -13.1 phosphoserine phosphatase compare
PS417_01210 -3.1 -12.6 hypothetical protein compare
PS417_22690 -3.1 -8.0 phosphogluconate dehydratase compare
PS417_20125 -2.9 -3.6 phosphoribosylglycinamide formyltransferase compare
PS417_02415 -2.9 -5.6 phosphoserine phosphatase compare
PS417_16570 -2.8 -10.6 isocitrate lyase compare
PS417_27835 -2.7 -8.9 endoribonuclease compare
PS417_24155 -2.7 -4.3 ATP-binding protein compare
PS417_23770 -2.6 -4.2 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -2.5 -4.1 cysteine synthase compare
PS417_01570 -2.4 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21705 -2.3 -7.6 arginine N-succinyltransferase compare
PS417_03925 -2.3 -6.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_20985 -2.3 -3.7 porin compare
PS417_22695 -2.3 -10.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22385 -2.2 -11.8 quinolinate synthase A compare
PS417_22520 -2.1 -4.2 histidine kinase compare
PS417_21035 -2.0 -12.0 multidrug transporter compare
PS417_08230 -1.9 -4.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01710 -1.9 -7.4 histidine utilization repressor compare
PS417_08220 -1.8 -1.6 epimerase compare
PS417_21700 -1.8 -4.5 arginine N-succinyltransferase compare
PS417_27010 -1.7 -8.4 threonine dehydratase compare
PS417_21125 -1.7 -7.0 phosphoadenosine phosphosulfate reductase compare
PS417_23900 -1.7 -11.1 poly(A) polymerase compare
PS417_24765 -1.7 -4.4 membrane protein compare
PS417_01560 -1.6 -1.9 imidazoleglycerol-phosphate dehydratase compare
PS417_26040 -1.6 -5.3 malate synthase compare
PS417_22570 -1.6 -1.7 H-NS histone compare
PS417_07170 -1.6 -3.6 hypothetical protein compare
PS417_18590 -1.6 -2.3 SAM-dependent methyltransferase compare
PS417_06200 -1.6 -5.2 protein-PII uridylyltransferase compare
PS417_18690 -1.5 -5.2 aromatic amino acid aminotransferase compare
PS417_06680 -1.5 -9.9 nuclease PIN compare
PS417_13510 -1.4 -1.9 polyketide cyclase compare
PS417_23775 -1.4 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_24835 -1.4 -4.9 hypothetical protein compare
PS417_26695 -1.4 -0.9 uracil phosphoribosyltransferase compare
PS417_08200 -1.3 -3.2 hypothetical protein compare
PS417_21690 -1.3 -6.1 N-succinylarginine dihydrolase compare
PS417_28100 -1.3 -5.9 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) conserved
PS417_26990 -1.2 -1.5 RNA pyrophosphohydrolase compare
PS417_08205 -1.2 -2.7 acetyltransferase compare
PS417_08580 -1.2 -6.3 histidine kinase compare
PS417_26005 -1.1 -7.5 biotin synthase compare
PS417_08245 -1.1 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21480 -1.1 -2.1 23S rRNA pseudouridylate synthase compare
PS417_06945 -1.1 -1.6 membrane protein compare
PS417_21655 -1.1 -1.8 aspartate kinase compare
PS417_16195 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_07115 -1.1 -7.8 L-aspartate oxidase compare
PS417_04365 -1.1 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23315 -1.1 -1.3 transcriptional regulator compare
PS417_06645 -1.0 -6.4 RNA polymerase-associated protein RapA compare
PS417_22445 -1.0 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_20610 -1.0 -1.8 hypothetical protein compare
PS417_01995 -1.0 -1.7 hypothetical protein compare
PS417_07165 -1.0 -4.1 dihydrodipicolinate synthase compare
PS417_08195 -1.0 -5.6 hypothetical protein compare
PS417_12355 -1.0 -1.9 magnesium chelatase compare
PS417_19805 -1.0 -1.5 flagellar M-ring protein FliF compare
PS417_21630 -1.0 -2.7 magnesium transporter compare
PS417_26755 -0.9 -2.8 nucleoside-triphosphate diphosphatase compare
PS417_00375 -0.9 -3.7 membrane protein compare
PS417_24935 -0.9 -0.9 hypothetical protein compare
PS417_27035 -0.9 -4.5 FAD-linked oxidase compare
PS417_17855 -0.9 -2.5 major facilitator transporter compare
PS417_03260 -0.8 -2.2 5S ribosomal RNA compare
PS417_00295 -0.8 -3.4 hypothetical protein compare
PS417_08225 -0.8 -3.5 acetolactate synthase compare
PS417_09915 -0.8 -1.6 hypothetical protein compare
PS417_10535 -0.8 -3.4 hypothetical protein compare
PS417_23950 -0.8 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_06685 -0.8 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_04050 -0.8 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_06045 -0.8 -1.8 membrane protein compare
PS417_14075 -0.8 -2.1 hypothetical protein compare
PS417_19600 -0.8 -1.2 exonuclease compare
PS417_16990 -0.8 -4.4 acyl-CoA dehydrogenase compare
PS417_27585 -0.8 -1.4 diaminopimelate epimerase compare
PS417_13255 -0.8 -1.3 ABC transporter compare
PS417_27875 -0.7 -5.0 histidine kinase compare
PS417_20665 -0.7 -3.5 hypothetical protein compare
PS417_20340 -0.7 -2.0 hypothetical protein compare
PS417_05905 -0.7 -1.4 hypothetical protein compare
PS417_18235 -0.7 -1.8 nitrile hydratase compare
PS417_28070 -0.7 -3.7 phosphate ABC transporter ATP-binding protein compare
PS417_20030 -0.7 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23650 -0.7 -2.8 Kynureninase (EC 3.7.1.3) (from data) compare
PS417_03310 -0.7 -3.7 carbonate dehydratase compare
PS417_17240 -0.7 -2.7 trigger factor compare
PS417_24790 -0.7 -3.3 hypothetical protein compare
PS417_06195 -0.7 -3.4 succinyldiaminopimelate aminotransferase compare
PS417_07595 -0.7 -1.9 PasA protein compare
PS417_00660 -0.7 -2.3 DSBA oxidoreductase compare
PS417_08305 -0.7 -1.1 transcriptional regulator compare
PS417_02990 -0.7 -2.5 hypothetical protein compare
PS417_05695 -0.7 -3.2 transcriptional regulator compare
PS417_26540 -0.7 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_12565 -0.7 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_06095 -0.7 -1.7 energy transducer TonB compare
PS417_05455 -0.6 -2.8 XRE family transcriptional regulator compare
PS417_24840 -0.6 -1.5 hypothetical protein compare
PS417_05530 -0.6 -3.2 membrane protein compare
PS417_18755 -0.6 -1.8 CrtK compare
PS417_01915 -0.6 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03705 -0.6 -2.3 2-alkenal reductase compare
PS417_05570 -0.6 -2.7 DeoR faimly transcriptional regulator compare
PS417_02485 -0.6 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13800 -0.6 -1.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_06730 -0.6 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01195 -0.6 -1.8 RNA-binding protein S4 compare
PS417_22565 -0.6 -0.9 formyltetrahydrofolate deformylase compare
PS417_08155 -0.6 -1.7 integration host factor subunit beta compare
PS417_05365 -0.6 -1.3 FAD-binding protein compare
PS417_12310 -0.6 -3.9 methionine synthase compare
PS417_08990 -0.6 -2.0 ABC transporter substrate-binding protein compare
PS417_20635 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_20025 -0.6 -1.3 alpha-ribazole phosphatase compare
PS417_28050 -0.6 -1.7 hypothetical protein compare
PS417_24800 -0.6 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_22450 -0.6 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_22640 -0.6 -1.6 cytochrome C biogenesis protein CcmE compare
PS417_23830 -0.6 -4.0 hypothetical protein compare
PS417_02800 -0.6 -1.5 acetyltransferase compare
PS417_20365 -0.6 -1.6 Cro/Cl family transcriptional regulator compare
PS417_18435 -0.6 -1.3 hypothetical protein compare
PS417_20855 -0.6 -0.8 hypothetical protein compare
PS417_16490 -0.6 -1.0 cell division protein FtsK compare
PS417_11430 -0.6 -3.7 EamA compare
PS417_17455 -0.6 -2.0 cytochrome C compare
PS417_23615 -0.6 -1.7 sulfate transporter compare
PS417_27490 -0.6 -1.6 hypothetical protein compare
PS417_26645 -0.6 -1.8 chemotaxis protein compare
PS417_28080 -0.6 -4.3 phosphate ABC transporter permease compare
PS417_28280 -0.5 -2.0 hypothetical protein compare
PS417_07470 -0.5 -0.9 hypothetical protein compare
PS417_10840 -0.5 -1.8 amidase compare
PS417_03200 -0.5 -1.6 ArsR family transcriptional regulator compare
PS417_07420 -0.5 -1.8 restriction endonuclease compare
PS417_04185 -0.5 -1.6 hypothetical protein compare
PS417_14600 -0.5 -1.5 bleomycin resistance protein compare
PS417_24125 -0.5 -1.6 hypothetical protein compare
PS417_15465 -0.5 -1.8 carboxynorspermidine decarboxylase compare
PS417_01735 -0.5 -2.0 ABC transporter permease compare
PS417_00490 -0.5 -2.2 iron ABC transporter ATP-binding protein compare
PS417_08430 -0.5 -2.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_14555 -0.5 -2.1 AsnC family transcriptional regulator compare
PS417_10715 -0.5 -1.5 Cro/Cl family transcriptional regulator compare
PS417_05985 -0.5 -1.9 chemotaxis protein CheY compare
PS417_05815 -0.5 -2.6 recombinase RecA compare
PS417_07620 -0.5 -1.2 beta-hexosaminidase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas simiae WCS417

For carbon source D-Trehalose dihydrate across organisms