Experiment set2IT071 for Agrobacterium fabrum C58

Compare to:

D-(-)-lyxose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.8 -7.6 anthranilate phosphoribosyltransferase compare
Atu1845 -7.5 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu2289 -7.1 -12.8 anthranilate synthase component I and II compare
Atu3754 -7.0 -5.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -6.9 -4.7 orotate phosphoribosyltransferase compare
Atu1844 -6.9 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -6.8 -11.4 glycerol-3-phosphate dehydrogenase compare
Atu0679 -6.8 -4.7 ATP phosphoribosyltransferase compare
Atu0038 -6.5 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2709 -6.5 -18.9 3-isopropylmalate dehydratase, large subunit compare
Atu2036 -6.5 -13.2 acetolactate synthase III, large subunit compare
Atu1205 -6.5 -12.4 threonine dehydratase compare
Atu4482 -6.5 -11.7 xylulokinase compare
Atu2791 -6.5 -8.6 3-isopropylmalate dehydrogenase compare
Atu1308 -6.4 -7.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1850 -6.4 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2264 -6.3 -13.4 2-isopropylmalate synthase compare
Atu3755 -6.3 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0099 -6.2 -10.4 prephenate dehydratase compare
Atu1688 -6.1 -4.2 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu1141 -6.1 -9.3 Phosphoribosylglycinamide synthetase compare
Atu1075 -6.0 -8.2 amidophosphoribosyltransferase compare
Atu3885 -5.9 -9.9 inositol monophosphatase compare
Atu0399 -5.9 -5.8 dihydroorotase compare
Atu0298 -5.9 -8.1 orotidine 5 compare
Atu0537 -5.8 -6.9 histidinol dehydrogenase compare
Atu0678 -5.7 -5.6 histidyl-tRNA synthetase compare
Atu1140 -5.7 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1750 -5.6 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0432 -5.6 -10.4 O-succinylhomoserine sulfhydrylase compare
Atu1307 -5.3 -6.8 dihydroorotase compare
Atu3706 -5.3 -10.2 D-3-phosphoglycerate dehydrogenase compare
Atu2790 -5.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu1588 -5.0 -11.2 homoserine dehydrogenase compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -4.9 -6.7 phosphoribosylamine--glycine ligase compare
Atu0486 -4.8 -6.9 dihydroorotate dehydrogenase compare
Atu0017 -4.8 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0039 -4.7 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2718 -4.6 -9.6 homoserine O-succinyltransferase compare
Atu3482 -4.4 -12.5 pantoate--beta-alanine ligase compare
Atu0041 -4.0 -3.9 glutamine amidotransferase compare
Atu0769 -3.9 -3.6 protoheme IX farnesyltransferase compare
Atu2040 -3.9 -5.4 phosphoserine phosphatase compare
Atu2156 -3.9 -12.5 hypothetical protein compare
Atu2015 -3.6 -16.1 aminotransferase compare
Atu1359 -3.5 -2.1 dnaK deletion suppressor protein compare
Atu2747 -3.5 -17.1 hypothetical protein compare
Atu3739 -3.4 -2.0 phosphoglycerate kinase compare
Atu0641 -3.4 -5.5 hypothetical protein compare
Atu1456 -3.4 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4451 -3.0 -12.3 mannitol 2-dehydrogenase compare
Atu4711 -2.9 -7.8 two component sensor kinase compare
Atu1454 -2.9 -9.6 siroheme synthase compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1589 -2.8 -9.4 aminotransferase, class I compare
Atu8054 -2.8 -1.1 hypothetical protein compare
Atu3783 -2.7 -14.9 glutamate synthase subunit beta compare
Atu3483 -2.5 -8.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0346 -2.4 -6.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0434 -2.3 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1455 -2.3 -3.7 hypothetical protein compare
Atu3784 -2.2 -17.8 glutamate synthase large subunit compare
Atu4685 -2.1 -8.6 LacI family transcriptional regulator compare
Atu6098 -2.0 -1.2 transcriptional regulator, HTH family compare
Atu3598 -2.0 -3.3 thiol:disulfide interchange protein compare
Atu2155 -2.0 -13.4 methionine synthase compare
Atu1686 -1.9 -12.2 peptidyl-prolyl cis-trans isomerse D compare
Atu3485 -1.9 -12.4 short chain dehydrogenase compare
Atu0422 -1.8 -2.3 ABC transporter, membrane spanning protein compare
Atu1457 -1.8 -2.9 hypothetical protein compare
Atu0062 -1.8 -6.3 transcriptional regulator, ROK family compare
Atu1462 -1.7 -11.0 glycine cleavage system protein P2 compare
Atu0421 -1.7 -2.1 ABC transporter, membrane spanning protein compare
Atu1463 -1.6 -6.1 glycine cleavage system component H compare
Atu3878 -1.6 -8.1 transcriptional regulator compare
Atu3731 -1.6 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu4481 -1.6 -3.6 LacI family transcriptional regulator compare
Atu4483 -1.5 -8.6 xylose isomerase compare
Atu4364 -1.5 -6.6 LacI family transcriptional regulator compare
Atu1286 -1.4 -5.1 hypothetical protein compare
Atu3469 -1.4 -2.8 phosphoglyceromutase compare
Atu0771 -1.4 -6.8 cytochrome c oxidase subunit III compare
Atu4098 -1.4 -9.4 quinolinate synthetase compare
Atu3727 -1.4 -3.5 hypothetical protein compare
Atu4029 -1.3 -6.1 gluconolactonase compare
Atu0188 -1.3 -3.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4096 -1.3 -5.7 nicotinate-nucleotide pyrophosphorylase compare
Atu0723 -1.3 -1.5 FAD dependent oxidoreductase compare
Atu6114 -1.3 -2.5 hypothetical protein compare
Atu2237 -1.2 -5.0 cytochrome c1 compare
Atu0322 -1.2 -4.5 enoyl CoA hydratase compare
Atu4502 -1.2 -6.3 cobalamin synthesis protein compare
Atu0190 -1.2 -5.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1774 -1.2 -6.5 ABC transporter, substrate binding protein (peptide) compare
Atu1464 -1.2 -4.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu2726 -1.2 -9.5 pyruvate carboxylase compare
Atu4674 -1.2 -6.7 GntR family transcriptional regulator compare
Atu1242 -1.2 -6.8 cytochrome oxidase assembly factor compare
Atu2207 -1.2 -4.0 two component sensor kinase compare
Atu0357 -1.2 -6.9 phosphate starvation inducible protein compare
Atu3290 -1.2 -6.4 phosphomethylpyrimidine kinase compare
Atu3337 -1.2 -6.8 LacI family transcriptional regulator compare
Atu1546 -1.2 -2.7 transcriptional regulator, MerR family compare
Atu1074 -1.1 -8.3 NAD/NADP dependent oxidoreductase compare
Atu1685 -1.1 -1.3 hypothetical protein compare
Atu0768 -1.1 -7.9 cytochrome-c oxidase chain I compare
Atu0405 -1.1 -8.2 long-chain-fatty-acid-CoA-ligase compare
Atu2548 -1.1 -8.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0501 -1.1 -6.7 acyl-CoA dehydrogenase compare
Atu1714 -1.1 -1.9 exonuclease III compare
Atu0770 -1.1 -4.2 cytochrome C oxidase assembly protein compare
Atu0767 -1.1 -5.2 cytochrome c oxidase subunit II compare
Atu0598 -1.1 -5.5 phosphogluconate dehydratase compare
Atu4449 -1.1 -4.2 sorbitol/mannitol ABC transporter permease compare
Atu1748 -1.1 -5.6 NIFU-like protein compare
Atu0590 -1.1 -5.7 transcriptional regulator repressor compare
Atu4448 -1.0 -5.0 sorbitol/mannitol ABC transporter permease compare
Atu0291 -1.0 -5.9 hypothetical protein compare
Atu0030 -1.0 -1.6 phosphocarrier protein HPr compare
Atu1705 -1.0 -2.8 SEC-independent protein translocase protein compare
Atu2238 -1.0 -5.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2239 -1.0 -4.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4530 -1.0 -5.0 TetR family transcriptional regulator compare
Atu1446 -1.0 -1.3 two component response regulator compare
Atu0687 -1.0 -2.1 hypothetical protein compare
Atu0502 -1.0 -4.3 acetyl-CoA acetyltransferase compare
Atu3963 -1.0 -4.6 GntR family transcriptional regulator compare
Atu0895 -1.0 -2.8 ABC transporter, substrate binding protein compare
Atu0029 -1.0 -3.4 S-adenosylhomocysteine hydrolase compare
Atu4702 -1.0 -4.1 GntR family transcriptional regulator compare
Atu4373 -0.9 -5.0 LacI family transcriptional regulator compare
Atu2777 -0.9 -5.2 hypothetical protein compare
Atu2800 -0.9 -2.6 precorrin-3B C17-methyltransferase compare
Atu3730 -0.9 -1.3 hypothetical protein compare
Atu1028 -0.9 -2.0 hypothetical protein compare
Atu4097 -0.9 -5.7 L-aspartate oxidase compare
Atu0503 -0.9 -6.1 enoyl-CoA hydratase compare
Atu5125 -0.9 -2.6 GntR family transcriptional regulator compare
Atu4450 -0.9 -4.0 sugar ABC transporter ATPase compare
Atu3288 -0.9 -5.0 hydroxyethylthiazole kinase compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu5010 -0.9 -2.3 hypothetical protein compare
Atu2267 -0.9 -3.3 hypothetical protein compare
Atu3162 -0.8 -5.0 LacI family transcriptional regulator compare
Atu3740 -0.8 -5.0 fructose bisphosphate aldolase compare
Atu4556 -0.8 -4.0 LacI family transcriptional regulator compare
Atu8115 -0.8 -4.4 Hypothetical Protein compare
Atu4599 -0.8 -5.4 IclR family transcriptional regulator compare
Atu0846 -0.8 -3.2 transcriptional regulator, MarR family compare
Atu5057 -0.8 -1.3 hypothetical protein compare
Atu2318 -0.8 -4.6 L-lactate dehydrogenase compare
Atu2352 -0.8 -1.7 hypothetical protein compare
Atu2432 -0.8 -1.8 hypothetical protein compare
Atu3886 -0.8 -4.2 lysophospholipase compare
Atu0876 -0.8 -1.8 superoxide dismutase compare
Atu0565 -0.8 -1.6 hypothetical protein compare
Atu0894 -0.8 -2.0 ABC transporter, membrane spanning protein compare
Atu2554 -0.8 -1.8 lysyl-tRNA synthetase compare
Atu0912 -0.8 -1.4 Na+/H+ antiporter compare
Atu1818 -0.8 -1.4 hypothetical protein compare
Atu8056 -0.8 -1.0 hypothetical protein compare
Atu0976 -0.8 -1.5 cycL protein compare
Atu4514 -0.8 -3.6 RpiR family transcriptional regulator compare
Atu0014 -0.8 -3.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
Atu0189 -0.8 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu2787 -0.8 -1.0 hypothetical protein compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu2803 -0.7 -2.5 Cobalamin biosynthesis associated protein compare
Atu2125 -0.7 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4223 -0.7 -1.6 sarcosine oxidase delta subunit compare
Atu8145 -0.7 -1.7 hypothetical protein compare
Atu2746 -0.7 -2.1 hypothetical protein compare
Atu4053 -0.7 -1.4 succinoglycan biosynthesis protein compare
Atu0795 -0.7 -1.5 hypothetical protein compare
Atu4446 -0.7 -5.1 hypothetical protein compare
Atu4232 -0.7 -2.4 GntR family transcriptional regulator compare
Atu3289 -0.7 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu3534 -0.7 -5.6 ABC transporter permease compare
Atu0101 -0.7 -1.9 cytochrome c compare
Atu4447 -0.7 -5.4 sorbitol ABC transporter substrate-binding protein compare
Atu1634 -0.7 -1.3 hypothetical protein compare
Atu3075 -0.7 -2.7 TetR family transcriptional regulator compare
Atu6045 -0.7 -1.1 replication protein C compare
Atu3083 -0.7 -3.2 hypothetical protein compare
Atu4108 -0.7 -4.5 ribonuclease D compare
Atu0939 -0.7 -1.9 PemI protein compare
Atu2710 -0.7 -3.4 hypothetical protein compare
Atu3712 -0.7 -1.1 hypothetical protein compare
Atu4452 -0.7 -3.2 hypothetical protein compare
Atu0107 -0.7 -1.3 hypothetical protein compare
Atu4576 -0.7 -3.9 ROK family transcriptional regulator compare
Atu4187 -0.6 -1.2 tRNA-Met compare
Atu0106 -0.6 -2.7 cold shock protein compare
Atu4317 -0.6 -2.1 TetR family transcriptional regulator compare
Atu1258 -0.6 -2.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu1056 -0.6 -2.7 hypothetical protein compare
Atu3536 -0.6 -4.7 ABC transporter permease compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-(-)-lyxose in Agrobacterium fabrum C58

For carbon source D-(-)-lyxose across organisms