Experiment set2IT070 for Pseudomonas simiae WCS417

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.4 -5.1 isopropylmalate isomerase compare
PS417_01575 -7.1 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18585 -6.6 -4.6 3-isopropylmalate dehydrogenase compare
PS417_27040 -6.3 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_11520 -6.0 -7.1 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) conserved
PS417_00185 -5.7 -3.9 tryptophan synthase subunit beta compare
PS417_23800 -5.7 -8.7 ketol-acid reductoisomerase compare
PS417_01850 -5.5 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_24745 -5.5 -3.8 gamma-glutamyl phosphate reductase compare
PS417_25720 -5.3 -8.9 anthranilate synthase component II compare
PS417_12710 -5.1 -8.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_18595 -5.1 -6.0 3-isopropylmalate dehydratase compare
PS417_18560 -5.0 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23545 -5.0 -3.4 gamma-glutamyl kinase compare
PS417_25725 -4.9 -14.0 anthranilate synthase component I compare
PS417_04420 -4.9 -11.3 histidinol dehydrogenase compare
PS417_12695 -4.8 -6.2 mannitol dehydrogenase compare
PS417_02510 -4.8 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12855 -4.7 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04415 -4.7 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_16465 -4.6 -12.1 sirohydrochlorin ferrochelatase compare
PS417_02005 -4.6 -11.7 glutamate synthase compare
PS417_26740 -4.6 -10.5 homoserine acetyltransferase compare
PS417_00180 -4.3 -2.9 tryptophan synthase subunit alpha compare
PS417_23810 -4.2 -12.9 acetolactate synthase 3 catalytic subunit compare
PS417_01855 -4.1 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -4.0 -4.9 acetolactate synthase 3 regulatory subunit compare
PS417_18530 -4.0 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -3.9 -8.0 sulfite reductase compare
PS417_26745 -3.8 -4.7 methionine biosynthesis protein MetW compare
PS417_01570 -3.8 -3.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01565 -3.7 -3.6 imidazole glycerol phosphate synthase compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_05595 -3.7 -8.0 ornithine carbamoyltransferase compare
PS417_12700 -3.7 -6.5 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_27195 -3.6 -2.2 N-acetylglutamate synthase compare
PS417_25715 -3.6 -5.4 anthranilate phosphoribosyltransferase compare
PS417_26890 -3.6 -5.6 dihydroxy-acid dehydratase compare
PS417_02000 -3.5 -13.7 glutamate synthase compare
PS417_12705 -3.5 -13.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_12715 -3.4 -11.8 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_23995 -3.4 -1.5 preprotein translocase subunit SecG compare
PS417_22690 -3.4 -6.3 phosphogluconate dehydratase compare
PS417_01580 -3.4 -1.8 imidazole glycerol phosphate synthase compare
PS417_02415 -3.3 -6.0 phosphoserine phosphatase compare
PS417_12690 -3.3 -7.3 xylulose kinase conserved
PS417_09725 -3.2 -10.9 transporter compare
PS417_23110 -3.2 -7.7 2-isopropylmalate synthase compare
PS417_14940 -3.2 -3.8 LysR family transcriptional regulator compare
PS417_01560 -3.2 -3.8 imidazoleglycerol-phosphate dehydratase compare
PS417_27795 -3.2 -2.1 orotate phosphoribosyltransferase compare
PS417_01605 -3.2 -3.0 phosphoglycerate mutase compare
PS417_20125 -3.1 -3.7 phosphoribosylglycinamide formyltransferase compare
PS417_21035 -2.9 -11.1 multidrug transporter compare
PS417_26730 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PS417_24155 -2.9 -4.4 ATP-binding protein compare
PS417_08220 -2.8 -1.8 epimerase compare
PS417_20160 -2.5 -4.4 cysteine synthase compare
PS417_22570 -2.5 -1.9 H-NS histone compare
PS417_26995 -2.5 -8.8 phosphoserine phosphatase compare
PS417_06375 -2.5 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26040 -2.4 -4.1 malate synthase compare
PS417_03925 -2.4 -8.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_20985 -2.3 -4.2 porin compare
PS417_22385 -2.3 -12.3 quinolinate synthase A compare
PS417_28220 -2.3 -1.8 LysR family transcriptional regulator compare
PS417_01710 -2.3 -4.4 histidine utilization repressor compare
PS417_08230 -2.2 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11515 -2.0 -3.2 sugar ABC transporter substrate-binding protein compare
PS417_11510 -1.8 -2.6 AraC family transcriptional regulator compare
PS417_08130 -1.8 -2.8 aspartate aminotransferase compare
PS417_24835 -1.6 -4.7 hypothetical protein compare
PS417_23770 -1.5 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_24765 -1.5 -5.1 membrane protein compare
PS417_24370 -1.5 -1.4 (2Fe-2S)-binding protein compare
PS417_08125 -1.5 -1.4 prephenate dehydratase compare
PS417_06710 -1.5 -2.5 beta-ketoadipyl CoA thiolase compare
PS417_19600 -1.4 -2.1 exonuclease compare
PS417_27835 -1.4 -6.2 endoribonuclease compare
PS417_26985 -1.4 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27610 -1.4 -6.0 hypothetical protein compare
PS417_21705 -1.4 -5.2 arginine N-succinyltransferase compare
PS417_08225 -1.4 -5.2 acetolactate synthase compare
PS417_22565 -1.4 -1.6 formyltetrahydrofolate deformylase compare
PS417_27010 -1.3 -8.2 threonine dehydratase compare
PS417_07115 -1.3 -9.5 L-aspartate oxidase compare
PS417_22450 -1.3 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_17490 -1.3 -2.7 ABC transporter ATP-binding protein compare
PS417_20610 -1.3 -1.4 hypothetical protein compare
PS417_21700 -1.2 -4.1 arginine N-succinyltransferase compare
PS417_16570 -1.2 -6.9 isocitrate lyase compare
PS417_21750 -1.2 -9.7 acetyl-CoA synthetase compare
PS417_22375 -1.2 -1.1 cold-shock protein compare
PS417_25940 -1.2 -6.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17645 -1.2 -2.0 RND transporter compare
PS417_04180 -1.2 -4.2 GntR family transcriptional regulator compare
PS417_17485 -1.2 -4.9 membrane protein compare
PS417_10995 -1.2 -2.8 GntR family transcriptional regulator compare
PS417_06685 -1.2 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_08155 -1.2 -2.6 integration host factor subunit beta compare
PS417_20635 -1.2 -1.3 ABC transporter ATP-binding protein compare
PS417_25920 -1.2 -5.6 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_23775 -1.2 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_05975 -1.1 -1.0 chemotaxis protein CheW compare
PS417_06680 -1.1 -7.3 nuclease PIN compare
PS417_03975 -1.1 -6.9 FruA compare
PS417_13075 -1.1 -1.7 hypothetical protein compare
PS417_17450 -1.1 -4.1 amino acid ABC transporter substrate-binding protein compare
PS417_20665 -1.1 -5.4 hypothetical protein compare
PS417_01995 -1.1 -2.6 hypothetical protein compare
PS417_06200 -1.1 -5.0 protein-PII uridylyltransferase compare
PS417_24100 -1.1 -5.5 transcriptional regulator PdhR compare
PS417_25815 -1.1 -2.9 magnesium transporter ApaG compare
PS417_05010 -1.1 -2.3 IclR family transcriptional regulator compare
PS417_08195 -1.1 -5.9 hypothetical protein compare
PS417_27605 -1.0 -4.6 hypothetical protein compare
PS417_08200 -1.0 -2.3 hypothetical protein compare
PS417_07455 -1.0 -1.9 glutamine amidotransferase compare
PS417_26850 -1.0 -1.1 twin-arginine translocation pathway signal protein compare
PS417_19335 -1.0 -3.0 isochorismatase compare
PS417_16990 -1.0 -5.2 acyl-CoA dehydrogenase compare
PS417_13510 -1.0 -1.5 polyketide cyclase compare
PS417_26420 -1.0 -1.8 hypothetical protein compare
PS417_17480 -1.0 -3.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_22795 -1.0 -2.3 exclusion suppressor FxsA compare
PS417_27875 -1.0 -4.5 histidine kinase compare
PS417_09705 -1.0 -2.7 hypothetical protein compare
PS417_17415 -1.0 -2.7 histidine kinase compare
PS417_04595 -1.0 -2.9 cell division protein MraZ compare
PS417_19805 -1.0 -2.5 flagellar M-ring protein FliF compare
PS417_07165 -1.0 -3.8 dihydrodipicolinate synthase compare
PS417_08245 -1.0 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_12595 -0.9 -2.2 transcriptional regulator compare
PS417_03100 -0.9 -1.2 pilus assembly protein compare
PS417_07170 -0.9 -2.9 hypothetical protein compare
PS417_19835 -0.9 -2.0 flagellar biosynthesis protein FliS compare
PS417_17435 -0.9 -6.4 dehydrogenase compare
PS417_10060 -0.9 -1.6 hypothetical protein compare
PS417_08580 -0.9 -4.6 histidine kinase compare
PS417_27035 -0.9 -2.6 FAD-linked oxidase compare
PS417_13295 -0.9 -3.3 TetR family transcriptional regulator compare
PS417_08205 -0.9 -3.1 acetyltransferase compare
PS417_28050 -0.9 -1.7 hypothetical protein compare
PS417_13165 -0.9 -1.7 peroxidase compare
PS417_03965 -0.9 -2.9 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_11930 -0.9 -5.1 hypothetical protein compare
PS417_18690 -0.9 -2.8 aromatic amino acid aminotransferase compare
PS417_11535 -0.9 -2.2 nicotinate phosphoribosyltransferase compare
PS417_08685 -0.8 -1.6 flagellar hook-length control protein FliK compare
PS417_18755 -0.8 -1.3 CrtK compare
PS417_09680 -0.8 -1.8 hydrolase compare
PS417_12565 -0.8 -1.4 2-dehydro-3-deoxygluconokinase compare
PS417_13255 -0.8 -2.4 ABC transporter compare
PS417_19665 -0.8 -2.8 flagellar motor protein MotD compare
PS417_12310 -0.8 -4.5 methionine synthase compare
PS417_06945 -0.8 -1.5 membrane protein compare
PS417_16520 -0.8 -1.4 cold-shock protein compare
PS417_04270 -0.8 -4.5 ribonuclease G compare
PS417_10715 -0.8 -2.0 Cro/Cl family transcriptional regulator compare
PS417_18425 -0.8 -1.3 sporulation protein compare
PS417_22175 -0.8 -1.5 amino acid transporter LysE compare
PS417_24630 -0.8 -1.6 ATP-binding protein compare
PS417_27535 -0.8 -4.2 chemotaxis protein CheY compare
PS417_00705 -0.8 -1.3 MarR family transcriptional regulator compare
PS417_07000 -0.8 -2.6 hypothetical protein compare
PS417_18420 -0.7 -2.0 deoxyribonuclease compare
PS417_16490 -0.7 -0.8 cell division protein FtsK compare
PS417_22195 -0.7 -2.8 peptidase compare
PS417_27305 -0.7 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17425 -0.7 -2.7 hypothetical protein compare
PS417_10955 -0.7 -2.6 porin compare
PS417_05695 -0.7 -3.1 transcriptional regulator compare
PS417_06095 -0.7 -1.6 energy transducer TonB compare
PS417_18780 -0.7 -0.9 flavin reductase compare
PS417_01620 -0.7 -1.5 preprotein translocase subunit SecB compare
PS417_16640 -0.7 -2.0 toxin compare
PS417_01185 -0.7 -3.9 ribosomal protein S6 modification protein compare
PS417_03455 -0.7 -1.1 type III secretion protein compare
PS417_05905 -0.7 -1.1 hypothetical protein compare
PS417_15665 -0.7 -1.6 hypothetical protein compare
PS417_28510 -0.7 -3.4 chromosome partitioning protein compare
PS417_24810 -0.7 -4.7 aldehyde dehydrogenase compare
PS417_15035 -0.7 -1.3 alkylhydroperoxidase compare
PS417_25270 -0.7 -2.1 NrdR family transcriptional regulator compare
PS417_04835 -0.7 -1.9 hemolysin D compare
PS417_06400 -0.7 -2.5 succinylglutamate desuccinylase compare
PS417_23315 -0.7 -0.7 transcriptional regulator compare
PS417_02800 -0.7 -1.6 acetyltransferase compare
PS417_04865 -0.6 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_24030 -0.6 -1.5 MFS transporter compare
PS417_02720 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_04220 -0.6 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_17795 -0.6 -1.4 ABC transporter permease compare
PS417_07015 -0.6 -1.9 helicase compare
PS417_05575 -0.6 -4.5 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_05985 -0.6 -2.1 chemotaxis protein CheY compare
PS417_04375 -0.6 -1.4 ABC transporter ATP-binding protein compare
PS417_22520 -0.6 -1.6 histidine kinase compare
PS417_24535 -0.6 -1.4 membrane protein compare
PS417_25930 -0.6 -2.9 pyrroloquinoline quinone biosynthesis protein PqqC compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Sorbitol in Pseudomonas simiae WCS417

For carbon source D-Sorbitol across organisms