Experiment set2IT070 for Pseudomonas sp. RS175

Compare to:

Betaine carbon source 2.5 mM

200 most important genes:

  gene name fitness t score description  
PFR28_00325 -6.6 -4.5 Inner membrane protein YpjD compare
PFR28_03860 -6.1 -6.0 putative murein peptide carboxypeptidase compare
PFR28_04932 -5.8 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04135 -5.8 -10.5 Serine hydroxymethyltransferase compare
PFR28_04149 -5.6 -9.3 hypothetical protein compare
PFR28_02823 -5.4 -3.0 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04145 -5.2 -9.8 Protein FixB compare
PFR28_04131 -5.1 -6.9 Sarcosine oxidase subunit gamma compare
PFR28_04134 -5.1 -14.3 Sarcosine oxidase subunit beta compare
PFR28_04148 -5.1 -11.7 hypothetical protein compare
PFR28_02821 -5.0 -21.1 3-isopropylmalate dehydrogenase compare
PFR28_00186 -5.0 -8.4 ATP phosphoribosyltransferase compare
PFR28_04832 -4.9 -13.5 putative phosphatase compare
PFR28_03223 -4.8 -20.5 GTP pyrophosphokinase compare
PFR28_04133 -4.7 -9.0 Sarcosine oxidase subunit delta compare
PFR28_04246 -4.6 -11.9 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04147 -4.5 -12.9 putative N-methylproline demethylase compare
PFR28_05125 -4.5 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_05139 -4.5 -3.1 hypothetical protein compare
PFR28_03363 -4.4 -18.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04929 -4.4 -6.2 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04140 -4.4 -12.9 Carnitine monooxygenase oxygenase subunit compare
PFR28_03699 -4.4 -7.9 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04723 -4.4 -18.1 NAD(P) transhydrogenase subunit beta compare
PFR28_04308 -4.4 -3.0 Amino-acid acetyltransferase compare
PFR28_04986 -4.4 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_00187 -4.4 -15.6 Histidinol dehydrogenase compare
PFR28_05015 -4.3 -24.3 Glutamate synthase [NADPH] large chain compare
PFR28_02811 -4.3 -7.2 Amidophosphoribosyltransferase compare
PFR28_04724 -4.2 -10.3 NAD(P) transhydrogenase subunit alpha compare
PFR28_02824 -4.2 -6.8 3-isopropylmalate dehydratase large subunit compare
PFR28_04132 -4.2 -22.9 Sarcosine oxidase subunit alpha compare
PFR28_03420 -3.9 -6.0 hypothetical protein compare
PFR28_04202 -3.9 -7.5 5,10-methylenetetrahydrofolate reductase compare
PFR28_03697 -3.9 -14.6 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_05071 -3.9 -5.0 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04278 -3.9 -12.0 Dihydroxy-acid dehydratase compare
PFR28_04146 -3.9 -8.6 hypothetical protein compare
PFR28_02603 -3.9 -8.9 Siroheme synthase compare
PFR28_04139 -3.9 -10.9 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_05016 -3.9 -14.0 Glutamate synthase [NADPH] small chain compare
PFR28_00188 -3.8 -11.1 Histidinol-phosphate aminotransferase compare
PFR28_04245 -3.8 -13.7 Homoserine O-succinyltransferase compare
PFR28_04072 -3.8 -5.2 Bifunctional folate synthesis protein compare
PFR28_02810 -3.8 -14.5 O-succinylhomoserine sulfhydrylase compare
PFR28_04725 -3.8 -9.2 NAD(P) transhydrogenase subunit alpha part 1 compare
PFR28_04933 -3.7 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_03217 -3.7 -2.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_00837 -3.6 -5.4 hypothetical protein compare
PFR28_05244 -3.6 -13.2 Copper-exporting P-type ATPase compare
PFR28_03714 -3.5 -12.7 RNA polymerase-binding transcription factor DksA compare
PFR28_02608 -3.5 -4.0 DNA translocase FtsK compare
PFR28_03718 -3.5 -5.7 Transcriptional regulatory protein ZraR compare
PFR28_04834 -3.5 -14.5 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04930 -3.4 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_00054 -3.4 -1.5 hypothetical protein compare
PFR28_03549 -3.3 -2.1 Molybdopterin synthase catalytic subunit compare
PFR28_01365 -3.3 -6.5 hypothetical protein compare
PFR28_04161 -3.2 -8.7 HTH-type transcriptional regulator CdhR compare
PFR28_00926 -3.2 -4.1 hypothetical protein compare
PFR28_04958 -3.0 -2.4 hypothetical protein compare
PFR28_04165 -3.0 -8.3 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_00305 -3.0 -8.4 2-isopropylmalate synthase compare
PFR28_03698 -2.9 -12.0 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04830 -2.9 -10.6 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_02484 -2.8 -10.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00159 -2.8 -11.3 hypothetical protein compare
PFR28_03012 -2.8 -6.8 Phosphate acyltransferase compare
PFR28_03463 -2.8 -3.0 hypothetical protein compare
PFR28_04865 -2.8 -8.9 Glutamate--cysteine ligase compare
PFR28_03282 -2.7 -8.3 Arginine N-succinyltransferase subunit alpha compare
PFR28_03947 -2.7 -5.5 Riboflavin biosynthesis protein RibBA compare
PFR28_04985 -2.7 -5.1 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_01366 -2.7 -8.1 Sulfite reductase [ferredoxin] compare
PFR28_04936 -2.7 -5.6 Carboxy-terminal processing protease CtpB compare
PFR28_04425 -2.7 -9.7 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03414 -2.6 -3.6 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04882 -2.6 -10.5 Sulfur carrier protein FdhD compare
PFR28_02872 -2.6 -1.4 hypothetical protein compare
PFR28_04232 -2.6 -5.4 Glutathione synthetase compare
PFR28_04162 -2.6 -8.7 L-serine dehydratase TdcG compare
PFR28_04164 -2.6 -6.3 Glycine betaine transport system permease protein OpuAB compare
PFR28_03304 -2.6 -1.4 hypothetical protein compare
PFR28_04144 -2.5 -3.3 hypothetical protein compare
PFR28_02705 -2.5 -2.0 hypothetical protein compare
PFR28_04519 -2.5 -6.3 HTH-type transcriptional activator CmpR compare
PFR28_04403 -2.4 -2.4 hypothetical protein compare
PFR28_03388 -2.4 -11.4 Quinolinate synthase A compare
PFR28_04163 -2.4 -10.9 hypothetical protein compare
PFR28_00277 -2.4 -4.1 Queuine tRNA-ribosyltransferase compare
PFR28_00966 -2.3 -12.8 HTH-type transcriptional regulator CysB compare
PFR28_00851 -2.3 -2.6 Flagellum site-determining protein YlxH compare
PFR28_04325 -2.3 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_01006 -2.3 -6.5 Molybdopterin molybdenumtransferase compare
PFR28_04831 -2.2 -4.0 RNA pyrophosphohydrolase compare
PFR28_04518 -2.2 -9.1 2-oxoglutarate carboxylase small subunit compare
PFR28_03169 -2.2 -9.5 Tail-specific protease compare
PFR28_01113 -2.2 -4.5 DNA topoisomerase 1 compare
PFR28_01156 -2.2 -5.7 hypothetical protein compare
PFR28_01004 -2.1 -7.3 Molybdenum cofactor guanylyltransferase compare
PFR28_00098 -2.1 -7.5 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_00068 -2.1 -1.2 hypothetical protein compare
PFR28_03417 -2.1 -1.8 hypothetical protein compare
PFR28_04941 -2.1 -4.8 Protein-export protein SecB compare
PFR28_02838 -2.1 -8.2 Aromatic-amino-acid aminotransferase compare
PFR28_04517 -2.1 -8.5 Oxaloacetate decarboxylase alpha chain compare
PFR28_01930 -2.1 -2.9 HTH-type transcriptional regulator McbR compare
PFR28_02656 -2.1 -4.6 HTH-type transcriptional regulator CdhR compare
PFR28_00089 -2.0 -2.0 Transcription termination/antitermination protein NusA compare
PFR28_01408 -2.0 -2.0 hypothetical protein compare
PFR28_03369 -2.0 -6.2 Glycerol-3-phosphate regulon repressor compare
PFR28_00184 -2.0 -2.6 hypothetical protein compare
PFR28_03721 -1.9 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04069 -1.9 -11.5 hypothetical protein compare
PFR28_00403 -1.9 -4.5 Regulator of sigma-E protease RseP compare
PFR28_00602 -1.9 -1.7 hypothetical protein compare
PFR28_03551 -1.9 -3.9 Cyclic pyranopterin monophosphate synthase compare
PFR28_01003 -1.9 -3.4 hypothetical protein compare
PFR28_03883 -1.9 -7.2 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_04100 -1.9 -6.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_05078 -1.8 -3.0 hypothetical protein compare
PFR28_05068 -1.8 -4.4 hypothetical protein compare
PFR28_01005 -1.8 -5.0 Molybdenum cofactor biosynthesis protein B compare
PFR28_03151 -1.8 -2.0 Septum site-determining protein MinC compare
PFR28_03657 -1.8 -4.9 Beta-barrel assembly-enhancing protease compare
PFR28_03273 -1.8 -4.0 Aspartate kinase compare
PFR28_03596 -1.7 -2.4 Transcriptional regulator MraZ compare
PFR28_03413 -1.7 -3.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00780 -1.7 -1.3 hypothetical protein compare
PFR28_04068 -1.7 -10.5 hypothetical protein compare
PFR28_00695 -1.7 -1.9 Sulfur carrier protein TusA compare
PFR28_04070 -1.7 -10.6 hypothetical protein compare
PFR28_03653 -1.7 -1.7 Molybdopterin-synthase adenylyltransferase compare
PFR28_04103 -1.7 -6.5 Biotin synthase compare
PFR28_02442 -1.6 -4.3 hypothetical protein compare
PFR28_03000 -1.6 -5.4 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_00928 -1.6 -3.4 putative sugar transferase EpsL compare
PFR28_04712 -1.6 -1.3 Dodecin compare
PFR28_03724 -1.6 -5.6 Glucose-6-phosphate isomerase compare
PFR28_04102 -1.5 -6.4 8-amino-7-oxononanoate synthase compare
PFR28_00292 -1.5 -2.6 Protein IscX compare
PFR28_04380 -1.5 -3.0 Transcriptional regulator SutA compare
PFR28_01375 -1.5 -2.7 hypothetical protein compare
PFR28_02613 -1.5 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_03666 -1.4 -2.8 hypothetical protein compare
PFR28_00873 -1.4 -4.1 hypothetical protein compare
PFR28_00694 -1.4 -4.3 Beta-barrel assembly-enhancing protease compare
PFR28_01114 -1.4 -4.0 hypothetical protein compare
PFR28_00169 -1.4 -3.1 Phosphocarrier protein NPr compare
PFR28_04585 -1.3 -5.3 Chromosome partitioning protein ParA compare
PFR28_04119 -1.3 -2.4 putative GST-like protein YibF compare
PFR28_00480 -1.3 -3.9 HTH-type transcriptional activator CmpR compare
PFR28_00356 -1.3 -4.0 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_01362 -1.3 -1.4 hypothetical protein compare
PFR28_02616 -1.3 -8.7 Isocitrate dehydrogenase [NADP] compare
PFR28_03266 -1.3 -1.7 hypothetical protein compare
PFR28_03161 -1.3 -1.3 tRNA-Arg compare
PFR28_01154 -1.3 -2.3 hypothetical protein compare
PFR28_00561 -1.3 -2.4 Phosphogluconate dehydratase compare
PFR28_00194 -1.3 -5.7 Bifunctional enzyme CysN/CysC compare
PFR28_04071 -1.3 -1.1 Multifunctional CCA protein compare
PFR28_04902 -1.3 -4.9 Inner membrane protein YgaZ compare
PFR28_00180 -1.3 -4.0 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_02507 -1.3 -1.1 Phosphoglycolate phosphatase compare
PFR28_01460 -1.3 -0.9 Glutamine transport ATP-binding protein GlnQ compare
PFR28_02497 -1.2 -6.5 Molybdenum transport system permease protein ModB compare
PFR28_02925 -1.2 -6.7 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_02496 -1.2 -4.3 Molybdate-binding protein ModA compare
PFR28_02280 -1.2 -1.7 hypothetical protein compare
PFR28_03664 -1.2 -2.2 Ribosome-binding ATPase YchF compare
PFR28_00918 -1.2 -4.9 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_04208 -1.2 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_03465 -1.2 -2.9 CS1 fimbrial subunit A compare
PFR28_00170 -1.2 -3.7 RNase adapter protein RapZ compare
PFR28_04335 -1.2 -2.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PFR28_01378 -1.2 -2.5 Magnesium-chelatase 38 kDa subunit compare
PFR28_00193 -1.2 -5.6 Sulfate adenylyltransferase subunit 2 compare
PFR28_04944 -1.1 -2.9 DNA-binding transcriptional regulator NtrC compare
PFR28_00460 -1.1 -2.3 hypothetical protein compare
PFR28_01108 -1.1 -4.4 Universal stress protein A compare
PFR28_05062 -1.1 -6.6 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_04344 -1.1 -3.7 Exopolyphosphatase compare
PFR28_00605 -1.1 -7.0 hypothetical protein compare
PFR28_02449 -1.1 -5.6 putative branched-chain-amino-acid aminotransferase compare
PFR28_01369 -1.1 -6.0 Methionine synthase compare
PFR28_05036 -1.1 -0.8 Acyl carrier protein compare
PFR28_01410 -1.1 -3.9 Response regulator GacA compare
PFR28_03192 -1.1 -2.1 hypothetical protein compare
PFR28_04992 -1.1 -1.1 hypothetical protein compare
PFR28_00613 -1.0 -0.8 hypothetical protein compare
PFR28_04945 -1.0 -2.5 Sensory histidine kinase/phosphatase NtrB compare
PFR28_05205 -1.0 -3.0 Precorrin-8X methylmutase compare
PFR28_03321 -1.0 -1.9 Protein YciI compare
PFR28_03182 -1.0 -3.0 Recombination-associated protein RdgC compare
PFR28_01081 -1.0 -3.0 hypothetical protein compare
PFR28_04030 -1.0 -7.1 hypothetical protein compare
PFR28_00730 -1.0 -1.5 5-oxoprolinase subunit C compare
PFR28_01110 -1.0 -2.6 Fatty acid oxidation complex subunit alpha compare
PFR28_00689 -1.0 -7.2 L-aspartate oxidase compare
PFR28_01372 -1.0 -1.8 Precorrin-4 C(11)-methyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Betaine in Pseudomonas sp. RS175

For carbon source Betaine across organisms