Experiment set2IT070 for Agrobacterium fabrum C58

Compare to:

D-(-)-lyxose carbon source

200 most important genes:

  gene name fitness t score description  
Atu4482 -7.3 -7.2 xylulokinase compare
Atu1750 -7.3 -6.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -7.2 -8.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1687 -7.0 -9.6 anthranilate phosphoribosyltransferase compare
Atu0099 -6.9 -9.5 prephenate dehydratase compare
Atu2289 -6.9 -13.9 anthranilate synthase component I and II compare
Atu1844 -6.8 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0679 -6.7 -4.6 ATP phosphoribosyltransferase compare
Atu2791 -6.6 -7.8 3-isopropylmalate dehydrogenase compare
Atu2709 -6.5 -16.8 3-isopropylmalate dehydratase, large subunit compare
Atu3706 -6.4 -7.6 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -6.4 -13.0 2-isopropylmalate synthase compare
Atu1850 -6.3 -4.6 phosphoribosylformylglycinamidine synthetase II compare
Atu2036 -6.3 -14.0 acetolactate synthase III, large subunit compare
Atu1588 -6.1 -8.4 homoserine dehydrogenase compare
Atu1205 -6.1 -13.7 threonine dehydratase compare
Atu1308 -6.1 -8.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0432 -6.1 -9.1 O-succinylhomoserine sulfhydrylase compare
Atu1688 -6.0 -4.2 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.0 -4.2 phosphoserine aminotransferase compare
Atu1075 -6.0 -8.2 amidophosphoribosyltransferase compare
Atu1140 -6.0 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0399 -5.8 -5.7 dihydroorotase compare
Atu2650 -5.7 -13.3 glycerol-3-phosphate dehydrogenase compare
Atu0017 -5.7 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1307 -5.7 -5.0 dihydroorotase compare
Atu0678 -5.6 -5.5 histidyl-tRNA synthetase compare
Atu1141 -5.5 -7.3 Phosphoribosylglycinamide synthetase compare
Atu1845 -5.5 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu2040 -5.4 -6.4 phosphoserine phosphatase compare
Atu0537 -5.4 -6.4 histidinol dehydrogenase compare
Atu2718 -5.3 -9.4 homoserine O-succinyltransferase compare
Atu0038 -5.2 -6.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3885 -5.1 -9.3 inositol monophosphatase compare
Atu2790 -5.0 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu3755 -5.0 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0298 -5.0 -9.0 orotidine 5 compare
Atu0486 -4.9 -6.7 dihydroorotate dehydrogenase compare
Atu0043 -4.9 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0400 -4.7 -7.1 orotate phosphoribosyltransferase compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -4.6 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0647 -4.4 -5.3 phosphoribosylamine--glycine ligase compare
Atu2015 -4.0 -15.6 aminotransferase compare
Atu3482 -4.0 -9.2 pantoate--beta-alanine ligase compare
Atu3483 -3.9 -8.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1456 -3.8 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2747 -3.7 -11.6 hypothetical protein compare
Atu2156 -3.6 -12.3 hypothetical protein compare
Atu3739 -3.5 -4.4 phosphoglycerate kinase compare
Atu0641 -3.4 -5.3 hypothetical protein compare
Atu0041 -3.1 -3.6 glutamine amidotransferase compare
Atu0769 -3.1 -3.5 protoheme IX farnesyltransferase compare
Atu4451 -3.0 -12.3 mannitol 2-dehydrogenase compare
Atu1589 -3.0 -7.4 aminotransferase, class I compare
Atu3783 -2.7 -16.2 glutamate synthase subunit beta compare
Atu0040 -2.7 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1454 -2.7 -9.1 siroheme synthase compare
Atu0723 -2.5 -2.4 FAD dependent oxidoreductase compare
Atu4685 -2.4 -9.1 LacI family transcriptional regulator compare
Atu4711 -2.4 -6.8 two component sensor kinase compare
Atu1359 -2.2 -1.8 dnaK deletion suppressor protein compare
Atu3784 -2.2 -18.0 glutamate synthase large subunit compare
Atu1455 -2.2 -5.4 hypothetical protein compare
Atu1457 -2.1 -2.9 hypothetical protein compare
Atu0346 -2.1 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4481 -2.1 -5.1 LacI family transcriptional regulator compare
Atu6098 -2.1 -1.2 transcriptional regulator, HTH family compare
Atu4364 -2.0 -8.8 LacI family transcriptional regulator compare
Atu0062 -2.0 -10.5 transcriptional regulator, ROK family compare
Atu3485 -2.0 -12.1 short chain dehydrogenase compare
Atu2155 -2.0 -14.6 methionine synthase compare
Atu1686 -1.9 -11.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -1.8 -2.8 phosphoglyceromutase compare
Atu4483 -1.8 -11.7 xylose isomerase compare
Atu0188 -1.8 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1463 -1.7 -7.5 glycine cleavage system component H compare
Atu1462 -1.6 -10.6 glycine cleavage system protein P2 compare
Atu0030 -1.6 -2.1 phosphocarrier protein HPr compare
Atu1028 -1.6 -3.2 hypothetical protein compare
Atu4773 -1.5 -2.3 two component response regulator compare
Atu1464 -1.5 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu0361 -1.5 -2.3 transcriptional regulator compare
Atu0434 -1.5 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3288 -1.4 -5.6 hydroxyethylthiazole kinase compare
Atu0770 -1.4 -6.6 cytochrome C oxidase assembly protein compare
Atu1546 -1.4 -5.3 transcriptional regulator, MerR family compare
Atu4096 -1.4 -7.1 nicotinate-nucleotide pyrophosphorylase compare
Atu3878 -1.4 -7.6 transcriptional regulator compare
Atu3731 -1.4 -8.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu3289 -1.3 -3.8 thiamine-phosphate pyrophosphorylase compare
Atu1074 -1.3 -7.5 NAD/NADP dependent oxidoreductase compare
Atu5125 -1.3 -4.3 GntR family transcriptional regulator compare
Atu0771 -1.3 -6.8 cytochrome c oxidase subunit III compare
Atu2239 -1.3 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3963 -1.3 -5.6 GntR family transcriptional regulator compare
Atu4098 -1.3 -7.2 quinolinate synthetase compare
Atu2237 -1.3 -5.4 cytochrome c1 compare
Atu2726 -1.3 -10.2 pyruvate carboxylase compare
Atu3290 -1.2 -7.3 phosphomethylpyrimidine kinase compare
Atu3730 -1.2 -1.0 hypothetical protein compare
Atu8087 -1.2 -1.0 putative peptidoglycan binding protein compare
Atu1242 -1.2 -4.9 cytochrome oxidase assembly factor compare
Atu0598 -1.2 -5.4 phosphogluconate dehydratase compare
Atu4702 -1.2 -4.2 GntR family transcriptional regulator compare
Atu1286 -1.2 -3.3 hypothetical protein compare
Atu0768 -1.2 -6.7 cytochrome-c oxidase chain I compare
Atu3337 -1.2 -6.7 LacI family transcriptional regulator compare
Atu2238 -1.2 -5.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1446 -1.1 -2.4 two component response regulator compare
Atu4097 -1.1 -7.5 L-aspartate oxidase compare
Atu2484 -1.1 -2.1 hypothetical protein compare
Atu0846 -1.1 -3.4 transcriptional regulator, MarR family compare
Atu5164 -1.1 -0.9 type IV secretion protein AvhB3 compare
Atu0141 -1.1 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu4502 -1.1 -5.1 cobalamin synthesis protein compare
Atu0357 -1.1 -7.0 phosphate starvation inducible protein compare
Atu0322 -1.1 -3.6 enoyl CoA hydratase compare
Atu4448 -1.1 -5.1 sorbitol/mannitol ABC transporter permease compare
Atu3598 -1.0 -1.9 thiol:disulfide interchange protein compare
Atu0190 -1.0 -4.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4449 -1.0 -5.2 sorbitol/mannitol ABC transporter permease compare
Atu1774 -1.0 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu2548 -1.0 -7.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4029 -1.0 -4.4 gluconolactonase compare
Atu1714 -1.0 -1.7 exonuclease III compare
Atu6189 -1.0 -1.5 protein secretion chaperone compare
Atu0405 -1.0 -8.2 long-chain-fatty-acid-CoA-ligase compare
Atu2207 -1.0 -2.5 two component sensor kinase compare
Atu2433 -1.0 -1.2 hypothetical protein compare
Atu0029 -1.0 -4.6 S-adenosylhomocysteine hydrolase compare
Atu1163 -1.0 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0767 -1.0 -4.4 cytochrome c oxidase subunit II compare
Atu0501 -1.0 -5.6 acyl-CoA dehydrogenase compare
Atu1739 -1.0 -3.1 permease compare
Atu6106 -0.9 -2.8 conserved hypothetical protein compare
Atu4674 -0.9 -5.4 GntR family transcriptional regulator compare
Atu0502 -0.9 -5.2 acetyl-CoA acetyltransferase compare
Atu0291 -0.9 -5.5 hypothetical protein compare
Atu4530 -0.9 -5.4 TetR family transcriptional regulator compare
Atu0101 -0.9 -4.8 cytochrome c compare
Atu0590 -0.9 -4.6 transcriptional regulator repressor compare
Atu1705 -0.9 -3.5 SEC-independent protein translocase protein compare
Atu0503 -0.9 -7.0 enoyl-CoA hydratase compare
Atu0837 -0.9 -5.1 transcriptional regulator, MarR family compare
Atu0895 -0.9 -2.6 ABC transporter, substrate binding protein compare
Atu3794 -0.9 -5.2 FadR family transcriptional regulator compare
Atu2286 -0.9 -1.5 hypothetical protein compare
Atu0536 -0.9 -5.4 hypothetical protein compare
Atu3727 -0.9 -2.7 hypothetical protein compare
Atu6114 -0.9 -2.4 hypothetical protein compare
Atu2777 -0.9 -5.3 hypothetical protein compare
Atu4317 -0.9 -2.2 TetR family transcriptional regulator compare
Atu2532 -0.9 -2.0 transcriptional regulator, MarR family compare
Atu2554 -0.8 -2.0 lysyl-tRNA synthetase compare
Atu2205 -0.8 -3.1 transcriptional regulator, MarR family compare
Atu0421 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu0211 -0.8 -4.2 hypothetical protein compare
Atu0149 -0.8 -2.0 enoyl-(acyl-carrier-protein) reductase compare
Atu4447 -0.8 -5.4 sorbitol ABC transporter substrate-binding protein compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu3162 -0.8 -5.9 LacI family transcriptional regulator compare
Atu8052 -0.8 -1.1 hypothetical protein compare
Atu2662 -0.8 -1.1 acetyltransferase compare
Atu4232 -0.8 -3.2 GntR family transcriptional regulator compare
Atu2657 -0.8 -1.8 hypothetical protein compare
Atu5513 -0.8 -1.1 cold shock protein compare
Atu1469 -0.8 -1.9 hypothetical protein compare
Atu3105 -0.8 -3.1 hypothetical protein compare
Atu1904 -0.8 -3.3 transcriptional regulator compare
Atu4450 -0.7 -3.8 sugar ABC transporter ATPase compare
Atu4108 -0.7 -4.7 ribonuclease D compare
Atu2352 -0.7 -1.3 hypothetical protein compare
Atu4576 -0.7 -3.9 ROK family transcriptional regulator compare
Atu0106 -0.7 -4.0 cold shock protein compare
Atu1748 -0.7 -4.0 NIFU-like protein compare
Atu2113 -0.7 -1.9 N-acetylmuramoyl-L-alanine amidase compare
Atu3075 -0.7 -4.5 TetR family transcriptional regulator compare
Atu8181 -0.7 -2.6 hypothetical protein compare
Atu4446 -0.7 -4.5 hypothetical protein compare
Atu4373 -0.7 -3.9 LacI family transcriptional regulator compare
Atu3740 -0.7 -4.5 fructose bisphosphate aldolase compare
Atu0565 -0.7 -1.4 hypothetical protein compare
Atu0894 -0.7 -1.2 ABC transporter, membrane spanning protein compare
Atu0063 -0.7 -2.1 ABC transporter, substrate binding protein (sugar) compare
Atu6153 -0.7 -2.9 conserved hypothetical protein compare
Atu2809 -0.7 -4.2 cobalamin biosynthesis protein compare
Atu0189 -0.7 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2347 -0.7 -3.7 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2710 -0.6 -3.6 hypothetical protein compare
Atu5163 -0.6 -1.6 type IV secretion protein AvhB2 compare
Atu2318 -0.6 -3.5 L-lactate dehydrogenase compare
Atu3534 -0.6 -5.1 ABC transporter permease compare
Atu4161 -0.6 -1.1 hypothetical protein compare
Atu3535 -0.6 -3.9 ABC transporter permease compare
Atu0533 -0.6 -2.5 putative inhibitor of septum formation compare
Atu4452 -0.6 -2.3 hypothetical protein compare
Atu3491 -0.6 -1.7 hypothetical protein compare
Atu2578 -0.6 -2.3 cAMP-dependent protein kinase regulatory subunit compare
Atu2569 -0.6 -4.4 thiamine biosynthesis protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-(-)-lyxose in Agrobacterium fabrum C58

For carbon source D-(-)-lyxose across organisms