Experiment set2IT070 for Agrobacterium fabrum C58

Compare to:

D-(-)-lyxose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu2200 +1.8 8.9 cold shock protein compare
Atu3011 +1.7 6.4 ArsR family transcriptional regulator compare
Atu4465 +1.5 10.1 transcriptional regulator compare
Atu0562 +1.2 4.9 flagellar motor switch protein FliN compare
Atu3017 +1.2 2.1 phosphoglyceromutase compare
Atu0525 +1.2 6.1 transcriptional regulator, LuxR family compare
Atu1327 +1.2 5.2 NADH-ubiquinone oxidoreductase compare
Atu4890 +1.2 2.9 IS426 transposase compare
Atu0546 +1.2 7.1 flagellar biosynthetic protein compare
Atu3001 +1.1 3.0 hypothetical protein compare
Atu0549 +1.1 7.6 hypothetical protein compare
Atu0564 +1.1 8.7 flagellar biosynthetic protein compare
Atu0551 +1.1 3.2 flagellar protein FLGA precursor compare
Atu0557 +1.1 8.2 flagellum-specific ATP synthase compare
Atu3623 +1.1 6.3 DnaJ family molecular chaperone compare
Atu0580 +1.1 3.8 flagellar biosynthetic protein compare
Atu3016 +1.0 5.7 phosphoglyceromutase compare
Atu0548 +1.0 8.1 flagellar L-ring protein precursor compare
Atu3010 +1.0 6.1 hypothetical protein compare
Atu0558 +1.0 7.2 flagellar basal body rod protein compare
Atu0555 +1.0 7.5 flagellar basal-body rod protein FlgB compare
Atu0559 +1.0 8.6 hypothetical protein compare
Atu1810 +1.0 1.1 hypothetical protein compare
Atu4893 +1.0 3.5 hypothetical protein compare
Atu0554 +1.0 6.5 flagellar basal-body rod protein compare
Atu4888 +1.0 5.0 hypothetical protein compare
Atu0573 +1.0 4.5 transcriptional regulator compare
Atu0576 +1.0 5.2 flagellar hook-associated protein compare
Atu0523 +1.0 7.9 flagellar M-ring protein compare
Atu0524 +1.0 4.7 transcriptional regulator, LuxR family compare
Atu0569 +1.0 7.2 flagellar motor protein, PAL/OmpA family compare
Atu3013 +1.0 4.6 hypothetical protein compare
Atu4894 +1.0 6.1 transposase compare
Atu4897 +1.0 2.1 hypothetical protein compare
Atu0581 +1.0 8.5 flagellar biosynthesis protein compare
Atu6138 +0.9 4.3 Repressor of the acc and arc operons compare
Atu0582 +0.9 7.0 flagellar biosynthetic protein FLIR compare
Atu3019 +0.9 6.6 hypothetical protein compare
Atu0561 +0.9 5.9 flagellar motor switch protein compare
Atu0583 +0.9 4.0 hypothetical protein compare
Atu0550 +0.9 6.6 flagellar P-ring protein precursor compare
Atu0547 +0.9 6.0 flagellar protein compare
Atu0784 +0.9 4.9 hypothetical protein compare
Atu3014 +0.9 2.3 hypothetical protein compare
Atu0560 +0.9 7.0 flagellar motor protein compare
Atu4896 +0.9 1.4 acetyltransferase compare
Atu0552 +0.9 5.7 flagellar basal-body rod protein compare
Atu0571 +0.9 6.6 chemotaxis MotD protein compare
Atu0577 +0.9 3.2 FLAF protein compare
Atu4879 +0.9 5.0 hypothetical protein compare
Atu0575 +0.8 6.5 flagellar hook associated protein compare
Atu0570 +0.8 7.0 Chemotaxis protein compare
Atu0568 +0.8 5.6 hypothetical protein compare
Atu0578 +0.8 4.3 FlbT post-transcriptional regulator of flagellin compare
Atu4892 +0.8 6.6 hypothetical protein compare
Atu0563 +0.8 6.1 flagellar motor switch protein FliG compare
Atu3018 +0.8 2.8 hypothetical protein compare
Atu4887 +0.8 4.3 hypothetical protein compare
Atu4889 +0.8 4.1 hypothetical protein compare
Atu3021 +0.8 4.6 sugar ABC transporter ATPase compare
Atu8132 +0.8 3.7 hypothetical protein compare
Atu0584 +0.8 4.7 hypothetical protein compare
Atu2821 +0.8 4.2 transcriptional regulator, GntR family compare
Atu8054 +0.8 0.7 hypothetical protein compare
Atu8202 +0.8 2.4 hypothetical protein compare
Atu0553 +0.8 4.0 flagellar hook-basal body complex protein compare
Atu3022 +0.8 4.9 sugar ABC transporter permease compare
Atu3763 +0.8 1.3 hypothetical protein compare
Atu0225 +0.8 1.3 hypothetical protein compare
Atu3015 +0.8 4.0 hypothetical protein compare
Atu1447 +0.8 2.2 two component sensor kinase compare
Atu3577 +0.8 5.4 transcriptional regulator compare
Atu4869 +0.7 3.1 hypothetical protein compare
Atu4881 +0.7 4.3 hypothetical protein compare
Atu0477 +0.7 1.8 hypothetical protein compare
Atu0574 +0.7 5.9 flagellar hook protein compare
Atu5451 +0.7 1.2 hypothetical protein compare
Atu0579 +0.7 2.8 hook formation protein compare
Atu3009 +0.7 1.0 exopolysaccharide production protein compare
Atu0545 +0.7 3.8 flagella associated protein compare
Atu4875 +0.7 3.0 hypothetical protein compare
Atu1970 +0.7 2.8 hypothetical protein compare
Atu8055 +0.7 2.5 hypothetical protein compare
Atu4609 +0.7 5.3 glycosyltransferase compare
Atu1225 +0.7 1.3 hypothetical protein compare
Atu0184 +0.7 1.9 glucokinase compare
Atu1888 +0.6 5.4 two component sensor kinase compare
Atu3023 +0.6 4.3 sugar ABC transporter permease compare
Atu3020 +0.6 3.3 GntR family transcriptional regulator compare
Atu0938 +0.6 1.7 transcriptional regulator, MerR family compare
Atu3387 +0.6 1.7 sigma factor compare
Atu3461 +0.6 1.6 GntR family transcriptional regulator compare
Atu4884 +0.6 1.9 hypothetical protein compare
Atu4874 +0.6 4.1 hypothetical protein compare
Atu4608 +0.6 5.4 hypothetical protein compare
Atu1952 +0.6 1.2 hypothetical protein compare
Atu1565 +0.6 3.4 serine acetyltransferase compare
Atu3026 +0.6 3.5 short chain dehydrogenase compare
Atu4458 +0.6 1.8 hypothetical protein compare
Atu0585 +0.6 2.1 hypothetical protein compare
Atu6036 +0.6 0.9 entry-exclusion protein compare
Atu4610 +0.6 4.9 sugar nucleotide epimerase/dehydratase compare
Atu3012 +0.6 1.4 hypothetical protein compare
Atu3027 +0.6 4.4 dehydrogenase compare
Atu1683 +0.6 2.4 hypothetical protein compare
Atu2193 +0.6 0.9 hypothetical protein compare
Atu3024 +0.6 4.3 sugar ABC transporter permease compare
Atu0836 +0.6 2.2 Glutathione-S-transferase compare
Atu4872 +0.6 3.9 LysR family transcriptional regulator compare
Atu1980 +0.6 2.1 hypothetical protein compare
Atu0572 +0.6 2.4 hypothetical protein compare
Atu2379 +0.6 4.0 phosphomannomutase compare
Atu3183 +0.6 0.9 hypothetical protein compare
Atu2350 +0.6 4.2 transcriptional regulator, LysR family compare
Atu4864 +0.6 2.4 MarR family transcriptional regulator compare
Atu1470 +0.6 0.8 Camphor resistance protein compare
Atu0354 +0.6 1.2 ferric uptake regulator compare
Atu5115 +0.6 1.3 hypothetical protein compare
Atu0809 +0.6 0.7 hypothetical protein compare
Atu2582 +0.5 3.0 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0592 +0.5 3.3 ABC transporter, membrane spanning protein compare
Atu3423 +0.5 1.3 hypothetical protein compare
Atu0450 +0.5 4.0 transcription antitermination protein compare
Atu2584 +0.5 2.6 hypothetical protein compare
Atu0331 +0.5 2.1 sigma-54 modulation protein compare
Atu3029 +0.5 3.3 glucarate dehydratase compare
Atu4035 +0.5 4.4 two component response regulator compare
Atu3025 +0.5 4.2 oligo alginate lyase compare
Atu4499 +0.5 2.1 hypothetical protein compare
Atu1099 +0.5 2.5 hypothetical protein compare
Atu8093 +0.5 2.6 hypothetical protein compare
Atu0594 +0.5 3.1 alpha-glucosidase compare
Atu0593 +0.5 2.7 ABC transporter, membrane spanning protein compare
Atu3511 +0.5 1.9 glutaredoxin compare
Atu3647 +0.5 1.7 hypothetical protein compare
Atu4860 +0.5 3.1 hypothetical protein compare
Atu0674 +0.5 2.1 hypothetical protein compare
Atu4034 +0.5 3.4 two component sensor kinase compare
Atu1254 +0.5 1.4 transcriptional regulator, ArsR family compare
Atu4391 +0.5 1.2 nitric oxide reductase NorE protein compare
Atu4880 +0.5 3.2 AraC family transcriptional regulator compare
Atu2824 +0.5 1.9 hypothetical protein compare
Atu3208 +0.5 2.5 malate dehydrogenase compare
Atu2577 +0.5 3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4878 +0.5 1.8 hypothetical protein compare
Atu4870 +0.5 3.3 NADP-dependent quinone oxidoreductase compare
Atu0755 +0.5 1.8 hypothetical protein compare
Atu1846 +0.5 0.7 hypothetical protein compare
Atu2380 +0.5 1.6 hypothetical protein compare
Atu3031 +0.5 0.9 hypothetical protein compare
Atu0025 +0.5 1.7 hypothetical protein compare
Atu3579 +0.5 2.0 lactoylglutathione lyase compare
Atu4876 +0.5 3.3 oxidoreductase compare
Atu0677 +0.5 1.0 hypothetical protein compare
Atu3486 +0.5 0.8 DeoR family transcriptional regulator compare
Atu3028 +0.5 3.1 hypothetical protein compare
Atu8035 +0.5 0.9 hypothetical protein compare
Atu1321 +0.5 1.9 hypothetical protein compare
Atu4877 +0.4 3.4 short-chain dehydrogenase compare
Atu1189 +0.4 2.1 hypothetical protein compare
Atu1634 +0.4 0.8 hypothetical protein compare
Atu0185 +0.4 2.0 methylglyoxal synthase compare
Atu2462 +0.4 1.5 hypothetical protein compare
Atu3006 +0.4 1.6 hypothetical protein compare
Atu3037 +0.4 2.4 dipeptide ABC transporter permease compare
Atu0658 +0.4 2.7 phosphate permease compare
Atu0001 +0.4 2.2 hypothetical protein compare
Atu6024 +0.4 3.4 transcriptional regulator, LysR family compare
Atu4866 +0.4 2.2 hypothetical protein compare
Atu2074 +0.4 1.6 hypothetical protein compare
Atu4862 +0.4 3.4 IS21 family transposase compare
Atu2503 +0.4 2.6 dihydrodipicolinate synthase compare
Atu8096 +0.4 1.0 hypothetical protein compare
Atu1849 +0.4 1.9 hypothetical protein compare
Atu1694 +0.4 0.9 hypothetical protein compare
Atu3252 +0.4 2.4 GntR family transcriptional regulator compare
Atu3033 +0.4 2.4 hypothetical protein compare
Atu4099 +0.4 2.7 hypothetical protein compare
Atu4498 +0.4 2.5 hypothetical protein compare
Atu3976 +0.4 3.3 hypothetical protein compare
Atu1836 +0.4 1.2 hypothetical protein compare
Atu8138 +0.4 0.6 hypothetical protein compare
Atu3030 +0.4 1.7 hypothetical protein compare
Atu2620 +0.4 0.8 hypothetical protein compare
Atu5121 +0.4 2.5 two component response regulator compare
Atu5161 +0.4 2.0 hypothetical protein compare
Atu1965 +0.4 2.8 UDP-glucose 4-epimerase compare
Atu0050 +0.4 1.7 two component response regulator compare
Atu4582 +0.4 1.8 ferredoxin compare
Atu1085 +0.4 2.4 transcriptional regulator, MarR family compare
Atu3750 +0.4 1.4 thiamine-phosphate pyrophosphorylase compare
Atu0961 +0.4 1.6 hypothetical protein compare
Atu1968 +0.4 1.0 hypothetical protein compare
Atu0430 +0.4 2.4 chaperonin (heat shock protein hsp33) compare
Atu3254 +0.4 2.7 dicarboxylate ABC transporter ATPase compare
Atu3642 +0.4 2.6 vgrG protein compare
Atu3975 +0.4 2.9 UDP-galactopyranose mutase compare
Atu3035 +0.4 3.1 two component response regulator compare
Atu0119 +0.4 0.7 hypothetical protein compare
Atu2293 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-(-)-lyxose in Agrobacterium fabrum C58

For carbon source D-(-)-lyxose across organisms