Experiment set2IT069 for Pseudomonas simiae WCS417

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18585 -5.9 -5.8 3-isopropylmalate dehydrogenase compare
PS417_18560 -5.8 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.4 -16.3 anthranilate synthase component I compare
PS417_23800 -5.2 -10.0 ketol-acid reductoisomerase compare
PS417_27040 -5.2 -5.1 3-phosphoglycerate dehydrogenase compare
PS417_04420 -5.2 -10.5 histidinol dehydrogenase compare
PS417_23805 -5.0 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -5.0 -4.9 tryptophan synthase subunit beta compare
PS417_01855 -5.0 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -5.0 -13.9 acetolactate synthase 3 catalytic subunit compare
PS417_04415 -4.8 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23545 -4.8 -3.3 gamma-glutamyl kinase compare
PS417_05575 -4.6 -12.6 Glycerol kinase (EC 2.7.1.30) (from data) conserved
PS417_12855 -4.6 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18600 -4.6 -5.4 isopropylmalate isomerase compare
PS417_16465 -4.6 -12.1 sirohydrochlorin ferrochelatase compare
PS417_26740 -4.6 -10.9 homoserine acetyltransferase compare
PS417_23110 -4.5 -10.5 2-isopropylmalate synthase compare
PS417_12290 -4.4 -8.9 sulfite reductase compare
PS417_27795 -4.4 -2.0 orotate phosphoribosyltransferase compare
PS417_25720 -4.4 -7.1 anthranilate synthase component II compare
PS417_02510 -4.3 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02005 -4.3 -11.9 glutamate synthase compare
PS417_06375 -4.3 -2.0 deoxycytidine triphosphate deaminase compare
PS417_08125 -4.2 -1.9 prephenate dehydratase compare
PS417_02415 -4.2 -7.4 phosphoserine phosphatase compare
PS417_01850 -4.1 -8.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02000 -4.0 -12.3 glutamate synthase compare
PS417_05595 -4.0 -8.0 ornithine carbamoyltransferase compare
PS417_24745 -3.9 -4.7 gamma-glutamyl phosphate reductase compare
PS417_18595 -3.8 -4.0 3-isopropylmalate dehydratase compare
PS417_01575 -3.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27835 -3.8 -11.0 endoribonuclease compare
PS417_25715 -3.7 -5.9 anthranilate phosphoribosyltransferase compare
PS417_01570 -3.6 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01565 -3.6 -4.1 imidazole glycerol phosphate synthase compare
PS417_25710 -3.6 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_26745 -3.4 -6.4 methionine biosynthesis protein MetW compare
PS417_26995 -3.4 -9.8 phosphoserine phosphatase compare
PS417_26890 -3.4 -5.8 dihydroxy-acid dehydratase compare
PS417_18530 -3.3 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_01580 -3.2 -1.8 imidazole glycerol phosphate synthase compare
PS417_20125 -3.2 -4.1 phosphoribosylglycinamide formyltransferase compare
PS417_00180 -3.1 -3.7 tryptophan synthase subunit alpha compare
PS417_01605 -3.0 -2.8 phosphoglycerate mutase compare
PS417_27195 -2.8 -2.6 N-acetylglutamate synthase compare
PS417_26730 -2.8 -1.8 pyrroline-5-carboxylate reductase compare
PS417_26990 -2.7 -2.5 RNA pyrophosphohydrolase compare
PS417_20160 -2.7 -5.9 cysteine synthase compare
PS417_01560 -2.6 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_05580 -2.6 -5.9 glycerol uptake facilitator GlpF conserved
PS417_24155 -2.5 -3.7 ATP-binding protein compare
PS417_28220 -2.5 -2.3 LysR family transcriptional regulator compare
PS417_20985 -2.4 -4.1 porin compare
PS417_22620 -2.4 -6.9 pyruvate kinase compare
PS417_08230 -2.3 -2.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22690 -2.2 -4.6 phosphogluconate dehydratase compare
PS417_08245 -2.1 -1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23900 -2.1 -11.1 poly(A) polymerase compare
PS417_22695 -2.1 -9.3 glyceraldehyde-3-phosphate dehydrogenase conserved
PS417_21700 -2.0 -4.5 arginine N-succinyltransferase compare
PS417_27010 -2.0 -8.0 threonine dehydratase compare
PS417_03925 -1.9 -8.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_18690 -1.9 -4.8 aromatic amino acid aminotransferase compare
PS417_23995 -1.9 -1.2 preprotein translocase subunit SecG compare
PS417_23770 -1.9 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_22385 -1.8 -9.4 quinolinate synthase A compare
PS417_12870 -1.8 -2.4 enoyl-CoA hydratase compare
PS417_13510 -1.7 -2.0 polyketide cyclase compare
PS417_27035 -1.7 -6.4 FAD-linked oxidase compare
PS417_06200 -1.7 -5.2 protein-PII uridylyltransferase compare
PS417_21705 -1.7 -5.2 arginine N-succinyltransferase compare
PS417_01710 -1.6 -5.9 histidine utilization repressor compare
PS417_16990 -1.6 -6.0 acyl-CoA dehydrogenase compare
PS417_24935 -1.5 -1.2 hypothetical protein compare
PS417_21655 -1.5 -1.8 aspartate kinase compare
PS417_23775 -1.5 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_23950 -1.5 -3.5 polynucleotide phosphorylase/polyadenylase compare
PS417_27435 -1.4 -6.1 polyphosphate kinase compare
PS417_21035 -1.4 -7.0 multidrug transporter compare
PS417_27585 -1.4 -2.3 diaminopimelate epimerase compare
PS417_06100 -1.4 -2.1 SAM-dependent methyltransferase compare
PS417_22520 -1.3 -2.7 histidine kinase compare
PS417_26695 -1.3 -1.5 uracil phosphoribosyltransferase compare
PS417_24615 -1.3 -1.5 hypothetical protein compare
PS417_14980 -1.3 -1.7 universal stress protein UspA compare
PS417_24835 -1.3 -5.0 hypothetical protein compare
PS417_06680 -1.3 -7.8 nuclease PIN compare
PS417_28230 -1.3 -2.9 transcriptional regulator compare
PS417_02555 -1.3 -9.3 exoribonuclease R compare
PS417_07170 -1.2 -2.7 hypothetical protein compare
PS417_07115 -1.2 -8.5 L-aspartate oxidase compare
PS417_07470 -1.2 -1.6 hypothetical protein compare
PS417_09210 -1.2 -1.0 TetR family transcriptional regulator compare
PS417_11180 -1.1 -3.1 TetR family transcriptional regulator compare
PS417_26725 -1.1 -3.3 hypothetical protein compare
PS417_27875 -1.1 -4.0 histidine kinase compare
PS417_21750 -1.1 -9.1 acetyl-CoA synthetase compare
PS417_28070 -1.1 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_01915 -1.0 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_14515 -1.0 -2.1 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_13735 -1.0 -1.7 hypothetical protein compare
PS417_01825 -1.0 -2.4 chemotaxis protein compare
PS417_18590 -1.0 -2.2 SAM-dependent methyltransferase compare
PS417_05165 -1.0 -3.0 cytosol aminopeptidase compare
PS417_02720 -1.0 -1.1 TetR family transcriptional regulator compare
PS417_00160 -1.0 -1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_13185 -1.0 -2.2 RND transporter compare
PS417_06895 -1.0 -3.0 DNA-binding protein compare
PS417_09470 -1.0 -1.4 hypothetical protein compare
PS417_27085 -0.9 -2.8 AraC family transcriptional regulator compare
PS417_07595 -0.9 -3.2 PasA protein compare
PS417_15750 -0.9 -2.0 protease compare
PS417_13205 -0.9 -1.5 isochorismate-pyruvate lyase compare
PS417_07165 -0.9 -2.5 dihydrodipicolinate synthase compare
PS417_16715 -0.9 -1.7 DoxX family protein compare
PS417_01645 -0.9 -1.8 cupin compare
PS417_22445 -0.9 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_21125 -0.9 -3.8 phosphoadenosine phosphosulfate reductase compare
PS417_20025 -0.9 -1.2 alpha-ribazole phosphatase compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_01920 -0.8 -1.7 ATP-dependent protease subunit HslV compare
PS417_24525 -0.8 -1.7 nuclease compare
PS417_08195 -0.8 -4.4 hypothetical protein compare
PS417_14295 -0.8 -2.4 AraC family transcriptional regulator compare
PS417_21690 -0.8 -3.6 N-succinylarginine dihydrolase compare
PS417_19425 -0.8 -1.0 allantoicase compare
PS417_13255 -0.8 -1.8 ABC transporter compare
PS417_19805 -0.8 -1.2 flagellar M-ring protein FliF compare
PS417_24535 -0.8 -2.1 membrane protein compare
PS417_21210 -0.8 -2.0 amidotransferase compare
PS417_03685 -0.8 -1.6 FAD-dependent oxidoreductase compare
PS417_26335 -0.8 -1.7 BetI family transcriptional regulator compare
PS417_08430 -0.8 -3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_19095 -0.8 -1.1 hypothetical protein compare
PS417_17565 -0.8 -2.1 branched-chain amino acid aminotransferase compare
PS417_11925 -0.8 -1.7 hypothetical protein compare
PS417_16045 -0.8 -2.3 acyl-CoA dehydrogenase compare
PS417_06645 -0.8 -4.4 RNA polymerase-associated protein RapA compare
PS417_09915 -0.8 -1.4 hypothetical protein compare
PS417_08580 -0.8 -3.2 histidine kinase compare
PS417_04585 -0.7 -1.2 hypothetical protein compare
PS417_09300 -0.7 -2.0 peptidylprolyl isomerase compare
PS417_12355 -0.7 -1.6 magnesium chelatase compare
PS417_18395 -0.7 -1.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_27305 -0.7 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_06730 -0.7 -1.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_18310 -0.7 -1.7 hypothetical protein compare
PS417_00485 -0.7 -1.4 ABC transporter permease compare
PS417_07195 -0.7 -2.4 hypothetical protein compare
PS417_24810 -0.7 -4.0 aldehyde dehydrogenase compare
PS417_25895 -0.7 -1.7 glyoxalase compare
PS417_03100 -0.7 -1.1 pilus assembly protein compare
PS417_08225 -0.7 -3.1 acetolactate synthase compare
PS417_15725 -0.7 -2.4 nitrate/nitrite transporter NarK compare
PS417_24355 -0.7 -1.2 MFS transporter compare
PS417_22570 -0.7 -0.8 H-NS histone compare
PS417_21630 -0.7 -1.8 magnesium transporter compare
PS417_26040 -0.7 -3.0 malate synthase compare
PS417_12540 -0.7 -1.4 hypothetical protein compare
PS417_03920 -0.7 -1.2 dephospho-CoA kinase compare
PS417_15215 -0.7 -1.6 protein activator of alkane oxidation PraA compare
PS417_26175 -0.7 -0.8 sarcosine oxidase subunit gamma compare
PS417_17590 -0.7 -1.7 ABC transporter substrate-binding protein compare
PS417_28075 -0.7 -2.2 phosphate ABC transporter permease compare
PS417_26755 -0.7 -1.5 nucleoside-triphosphate diphosphatase compare
PS417_08205 -0.7 -2.4 acetyltransferase compare
PS417_18540 -0.7 -2.0 colicin V production CvpA compare
PS417_18400 -0.7 -2.2 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_15470 -0.7 -2.6 saccharopine dehydrogenase compare
PS417_14075 -0.7 -1.7 hypothetical protein compare
PS417_17945 -0.7 -0.8 hypothetical protein compare
PS417_03310 -0.7 -3.4 carbonate dehydratase compare
PS417_14655 -0.7 -1.0 lysine transporter LysE compare
PS417_28085 -0.7 -3.5 phosphate-binding protein compare
PS417_19835 -0.7 -1.4 flagellar biosynthesis protein FliS compare
PS417_05695 -0.6 -2.7 transcriptional regulator compare
PS417_24800 -0.6 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_06075 -0.6 -1.0 hypothetical protein compare
PS417_24765 -0.6 -2.5 membrane protein compare
PS417_08025 -0.6 -1.1 acetylornithine aminotransferase compare
PS417_25730 -0.6 -2.5 phosphoglycolate phosphatase compare
PS417_14600 -0.6 -1.9 bleomycin resistance protein compare
PS417_22230 -0.6 -3.0 class I peptide chain release factor compare
PS417_13055 -0.6 -1.7 aminotransferase compare
PS417_02705 -0.6 -1.5 urease accessory protein UreF compare
PS417_10405 -0.6 -0.8 filamentous hemagglutinin compare
PS417_11830 -0.6 -1.3 membrane protein compare
PS417_25920 -0.6 -3.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_27475 -0.6 -1.5 membrane protein compare
PS417_21320 -0.6 -2.3 transcriptional regulator compare
PS417_25055 -0.6 -1.9 transposase compare
PS417_25930 -0.6 -2.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_20665 -0.6 -2.7 hypothetical protein compare
PS417_23315 -0.6 -0.6 transcriptional regulator compare
PS417_20880 -0.6 -0.7 GntR family transcriptional regulator compare
PS417_08220 -0.6 -0.6 epimerase compare
PS417_11615 -0.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_12460 -0.6 -2.7 hypothetical protein compare
PS417_17490 -0.6 -1.4 ABC transporter ATP-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Pseudomonas simiae WCS417

For carbon source Glycerol across organisms