Experiment set2IT069 for Agrobacterium fabrum C58

Compare to:

Gentibiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1307 -7.3 -7.2 dihydroorotase compare
Atu0400 -6.8 -4.7 orotate phosphoribosyltransferase compare
Atu1844 -6.8 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2726 -6.8 -19.6 pyruvate carboxylase compare
Atu2791 -6.7 -6.6 3-isopropylmalate dehydrogenase compare
Atu3706 -6.7 -6.5 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -6.7 -11.2 2-isopropylmalate synthase compare
Atu1141 -6.7 -7.9 Phosphoribosylglycinamide synthetase compare
Atu1205 -6.6 -11.1 threonine dehydratase compare
Atu1588 -6.6 -9.0 homoserine dehydrogenase compare
Atu2289 -6.6 -15.9 anthranilate synthase component I and II compare
Atu3783 -6.5 -16.3 glutamate synthase subunit beta compare
Atu0038 -6.5 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3784 -6.4 -25.6 glutamate synthase large subunit compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu0679 -6.4 -6.2 ATP phosphoribosyltransferase compare
Atu1687 -6.3 -11.6 anthranilate phosphoribosyltransferase compare
Atu0099 -6.3 -9.8 prephenate dehydratase compare
Atu2036 -6.1 -15.9 acetolactate synthase III, large subunit compare
Atu1750 -6.1 -5.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1308 -5.9 -5.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1140 -5.9 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0678 -5.9 -4.1 histidyl-tRNA synthetase compare
Atu3754 -5.9 -8.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2709 -5.9 -20.0 3-isopropylmalate dehydratase, large subunit compare
Atu0298 -5.9 -8.1 orotidine 5 compare
Atu1688 -5.8 -5.7 indole-3-glycerol-phosphate synthase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0486 -5.5 -7.6 dihydroorotate dehydrogenase compare
Atu0537 -5.4 -6.5 histidinol dehydrogenase compare
Atu1075 -5.3 -8.1 amidophosphoribosyltransferase compare
Atu0647 -5.3 -5.1 phosphoribosylamine--glycine ligase compare
Atu2718 -5.2 -9.4 homoserine O-succinyltransferase compare
Atu0432 -5.2 -7.8 O-succinylhomoserine sulfhydrylase compare
Atu2650 -5.2 -10.9 glycerol-3-phosphate dehydrogenase compare
Atu2790 -5.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu3707 -5.1 -4.9 phosphoserine aminotransferase compare
Atu0399 -5.1 -6.0 dihydroorotase compare
Atu3885 -5.0 -8.6 inositol monophosphatase compare
Atu0185 -4.9 -4.7 methylglyoxal synthase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu0039 -4.7 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1850 -4.7 -4.2 phosphoribosylformylglycinamidine synthetase II compare
Atu3739 -4.7 -3.9 phosphoglycerate kinase compare
Atu2747 -4.7 -16.7 hypothetical protein compare
Atu3755 -4.5 -6.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4075 -4.5 -10.8 glycogen synthase compare
Atu0030 -4.3 -2.6 phosphocarrier protein HPr compare
Atu1845 -4.2 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu3483 -4.0 -9.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2015 -4.0 -15.3 aminotransferase compare
Atu1686 -4.0 -15.8 peptidyl-prolyl cis-trans isomerse D compare
Atu3482 -3.6 -11.0 pantoate--beta-alanine ligase compare
Atu2548 -3.6 -18.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1030 -3.5 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0792 -3.5 -5.2 hypothetical protein compare
Atu3469 -3.4 -4.0 phosphoglyceromutase compare
Atu0184 -3.2 -4.0 glucokinase compare
Atu1589 -3.2 -8.2 aminotransferase, class I compare
Atu5142 -3.2 -2.7 hypothetical protein compare
Atu0043 -3.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu0434 -3.0 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu6114 -2.9 -4.1 hypothetical protein compare
Atu0598 -2.9 -8.4 phosphogluconate dehydratase compare
Atu1456 -2.8 -11.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1359 -2.7 -1.9 dnaK deletion suppressor protein compare
Atu2155 -2.6 -17.2 methionine synthase compare
Atu4098 -2.5 -13.1 quinolinate synthetase compare
Atu4096 -2.5 -10.5 nicotinate-nucleotide pyrophosphorylase compare
Atu4773 -2.4 -2.2 two component response regulator compare
Atu1454 -2.3 -8.6 siroheme synthase compare
Atu0641 -2.3 -5.1 hypothetical protein compare
Atu1446 -2.3 -4.2 two component response regulator compare
Atu3997 -2.2 -15.9 biotin synthetase compare
Atu1685 -2.1 -1.8 hypothetical protein compare
Atu3290 -2.1 -11.4 phosphomethylpyrimidine kinase compare
Atu4097 -2.1 -10.5 L-aspartate oxidase compare
Atu3731 -2.1 -8.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu4000 -2.0 -13.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1455 -1.9 -3.2 hypothetical protein compare
Atu3998 -1.9 -10.9 8-amino-7-oxononanoate synthase compare
Atu3288 -1.9 -8.1 hydroxyethylthiazole kinase compare
Atu3289 -1.8 -3.5 thiamine-phosphate pyrophosphorylase compare
Atu4375 -1.8 -9.2 hypothetical protein compare
Atu2569 -1.8 -10.5 thiamine biosynthesis protein compare
Atu4373 -1.8 -9.7 LacI family transcriptional regulator compare
Atu2209 -1.8 -3.8 pyrroline-5-carboxylate reductase compare
Atu1604 -1.8 -11.8 poly-beta-hydroxybutyrate synthase compare
Atu3999 -1.7 -4.0 dithiobiotin synthetase compare
Atu2125 -1.7 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4001 -1.7 -7.2 3-oxoacyl-ACP synthase compare
Atu1891 -1.7 -3.5 cobalamin biosynthesis protein compare
Atu2801 -1.7 -3.9 precorrin-2 C20 methyltransferase compare
Atu1462 -1.7 -10.6 glycine cleavage system protein P2 compare
Atu8115 -1.7 -4.3 Hypothetical Protein compare
Atu1464 -1.6 -5.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1748 -1.6 -6.2 NIFU-like protein compare
Atu2554 -1.6 -2.5 lysyl-tRNA synthetase compare
Atu2555 -1.6 -5.7 L-lysine 2,3-aminomutase compare
Atu4374 -1.6 -5.4 hypothetical protein compare
Atu1542 -1.5 -7.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1572 -1.5 -5.8 hydrolase compare
Atu0502 -1.5 -5.3 acetyl-CoA acetyltransferase compare
Atu2127 -1.5 -6.1 L-carnitine dehydratase compare
Atu2205 -1.5 -7.1 transcriptional regulator, MarR family compare
Atu1457 -1.5 -2.4 hypothetical protein compare
Atu3183 -1.4 -1.4 hypothetical protein compare
Atu2800 -1.4 -2.6 precorrin-3B C17-methyltransferase compare
Atu0029 -1.4 -4.8 S-adenosylhomocysteine hydrolase compare
Atu2803 -1.4 -4.5 Cobalamin biosynthesis associated protein compare
Atu0601 -1.4 -6.6 oxidoreductase compare
Atu3908 -1.3 -9.1 GntR family transcriptional regulator compare
Atu0501 -1.3 -9.4 acyl-CoA dehydrogenase compare
Atu2770 -1.3 -4.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4173 -1.3 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu2809 -1.3 -8.1 cobalamin biosynthesis protein compare
Atu2795 -1.3 -4.6 cobalamin biosynthetic protein compare
Atu0503 -1.3 -9.5 enoyl-CoA hydratase compare
Atu1526 -1.3 -6.2 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4317 -1.2 -3.0 TetR family transcriptional regulator compare
Atu2799 -1.2 -4.1 precorrin-6x reductase compare
Atu4711 -1.2 -5.5 two component sensor kinase compare
Atu0188 -1.2 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu2376 -1.2 -1.0 hypothetical protein compare
Atu0291 -1.2 -6.8 hypothetical protein compare
Atu0405 -1.2 -9.1 long-chain-fatty-acid-CoA-ligase compare
Atu2808 -1.2 -4.9 cobyric acid synthase compare
Atu2123 -1.2 -5.2 methylenetetrahydrofolate reductase compare
Atu0769 -1.2 -1.9 protoheme IX farnesyltransferase compare
Atu2805 -1.1 -5.2 cobalamin synthesis protein compare
Atu0837 -1.1 -4.7 transcriptional regulator, MarR family compare
Atu1463 -1.1 -4.3 glycine cleavage system component H compare
Atu2821 -1.1 -5.3 transcriptional regulator, GntR family compare
Atu0354 -1.1 -1.9 ferric uptake regulator compare
Atu4217 -1.1 -1.4 TetR family transcriptional regulator compare
Atu2796 -1.1 -3.6 precorrin-4 C11-methyltransferase compare
Atu1802 -1.0 -5.5 lactoylglutathione lyase compare
Atu0031 -1.0 -1.4 PTS system, IIA component compare
Atu0361 -1.0 -2.7 transcriptional regulator compare
Atu0346 -1.0 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0977 -1.0 -4.0 serine protease DO-like protease compare
Atu1620 -1.0 -6.0 triosephosphate isomerase compare
Atu1774 -1.0 -6.0 ABC transporter, substrate binding protein (peptide) compare
Atu3730 -1.0 -1.5 hypothetical protein compare
Atu6165 -1.0 -0.8 hypothetical protein compare
Atu2802 -0.9 -3.7 precorrin-8X methylmutase compare
Atu0876 -0.9 -1.5 superoxide dismutase compare
Atu2807 -0.9 -3.6 cob(I)alamin adenosyltransferase compare
Atu2804 -0.9 -5.7 cobaltochelatase subunit compare
Atu2267 -0.9 -4.6 hypothetical protein compare
Atu2057 -0.9 -1.9 DNA helicase II compare
Atu2640 -0.9 -3.0 hypothetical protein compare
Atu2798 -0.9 -3.0 precorrin-6y methyltransferase compare
Atu2793 -0.8 -3.0 cobyrinic acid a,c-diamide synthase compare
Atu3763 -0.8 -1.2 hypothetical protein compare
Atu1219 -0.8 -0.8 hypothetical protein compare
Atu0640 -0.8 -1.6 hypothetical protein compare
Atu8087 -0.8 -0.7 putative peptidoglycan binding protein compare
Atu1285 -0.8 -4.2 metal dependent hydrolase compare
Atu0602 -0.8 -3.9 glutamine synthetase compare
Atu0723 -0.8 -1.3 FAD dependent oxidoreductase compare
Atu0659 -0.8 -2.7 NTP pyrophosphohydrolase, MutT family compare
Atu1810 -0.8 -1.2 hypothetical protein compare
Atu0190 -0.8 -4.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0331 -0.7 -1.5 sigma-54 modulation protein compare
Atu5047 -0.7 -2.0 hypothetical protein compare
Atu2827 -0.7 -1.9 hypothetical protein compare
Atu2083 -0.7 -3.1 DNA repair protein RecN compare
Atu3369 -0.7 -3.7 hypothetical protein compare
Atu1573 -0.7 -1.1 hypothetical protein compare
Atu5513 -0.7 -0.9 cold shock protein compare
Atu5429 -0.7 -1.6 transcriptional regulator compare
Atu2063 -0.7 -1.8 hypothetical protein compare
Atu3075 -0.7 -3.1 TetR family transcriptional regulator compare
Atu2428 -0.7 -4.2 exopolysaccharide production protein PssB compare
Atu0086 -0.7 -0.9 ribosome-binding factor A compare
Atu0939 -0.7 -1.9 PemI protein compare
Atu1667 -0.7 -1.4 hypothetical protein compare
Atu4078 -0.7 -4.7 glycogen phosphorylase compare
Atu1677 -0.7 -1.8 queuine tRNA-ribosyltransferase compare
Atu3345 -0.7 -2.5 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu0189 -0.7 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1372 -0.7 -2.7 hypothetical protein compare
Atu3732 -0.6 -4.2 hemolysin compare
Atu2200 -0.6 -2.1 cold shock protein compare
Atu2193 -0.6 -0.7 hypothetical protein compare
Atu1163 -0.6 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6045 -0.6 -0.9 replication protein C compare
Atu0153 -0.6 -3.1 transcriptional regulator, Fur family compare
Atu4372 -0.6 -3.7 ribose ABC transporter permease compare
Atu1705 -0.6 -2.8 SEC-independent protein translocase protein compare
Atu0332 -0.6 -3.0 RNA polymerase sigma-54 factor compare
Atu6179 -0.6 -2.2 virA/G regulated protein compare
Atu2020 -0.6 -2.5 transcriptional regulator, TetR family compare
Atu5468 -0.6 -1.0 hypothetical protein compare
Atu3627 -0.6 -0.9 hypothetical protein compare
Atu0912 -0.6 -0.8 Na+/H+ antiporter compare
Atu5157 -0.6 -1.0 hypothetical protein compare
Atu8046 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Gentibiose in Agrobacterium fabrum C58

For carbon source Gentibiose across organisms