Experiment set2IT067 for Pseudomonas simiae WCS417

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.5 -5.1 isopropylmalate isomerase compare
PS417_01575 -6.5 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -6.4 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -5.7 -9.0 anthranilate synthase component II compare
PS417_18585 -5.7 -6.7 3-isopropylmalate dehydrogenase compare
PS417_18560 -5.6 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04415 -5.6 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -5.6 -5.4 3-phosphoglycerate dehydrogenase compare
PS417_00185 -5.3 -5.2 tryptophan synthase subunit beta compare
PS417_24745 -5.2 -5.0 gamma-glutamyl phosphate reductase compare
PS417_18595 -5.2 -6.1 3-isopropylmalate dehydratase compare
PS417_23800 -5.1 -13.3 ketol-acid reductoisomerase compare
PS417_02005 -4.9 -13.9 glutamate synthase compare
PS417_02510 -4.9 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26740 -4.9 -10.1 homoserine acetyltransferase compare
PS417_25725 -4.8 -15.1 anthranilate synthase component I compare
PS417_04420 -4.6 -12.6 histidinol dehydrogenase compare
PS417_27795 -4.6 -2.0 orotate phosphoribosyltransferase compare
PS417_18530 -4.6 -8.6 O-succinylhomoserine sulfhydrylase compare
PS417_23810 -4.6 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_23545 -4.5 -4.4 gamma-glutamyl kinase compare
PS417_25715 -4.5 -6.8 anthranilate phosphoribosyltransferase compare
PS417_26745 -4.3 -6.6 methionine biosynthesis protein MetW compare
PS417_16465 -4.2 -12.8 sirohydrochlorin ferrochelatase compare
PS417_23805 -4.2 -7.4 acetolactate synthase 3 regulatory subunit compare
PS417_01850 -4.0 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02000 -3.9 -13.5 glutamate synthase compare
PS417_05595 -3.9 -9.5 ornithine carbamoyltransferase compare
PS417_24155 -3.8 -3.7 ATP-binding protein compare
PS417_25710 -3.8 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_23110 -3.8 -10.4 2-isopropylmalate synthase compare
PS417_12855 -3.8 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02415 -3.7 -7.9 phosphoserine phosphatase compare
PS417_08245 -3.6 -2.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01565 -3.6 -5.0 imidazole glycerol phosphate synthase compare
PS417_26995 -3.6 -10.5 phosphoserine phosphatase compare
PS417_12290 -3.5 -9.1 sulfite reductase compare
PS417_23995 -3.5 -1.5 preprotein translocase subunit SecG compare
PS417_01570 -3.5 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26890 -3.4 -7.1 dihydroxy-acid dehydratase compare
PS417_06375 -3.3 -2.0 deoxycytidine triphosphate deaminase compare
PS417_20125 -3.2 -6.3 phosphoribosylglycinamide formyltransferase compare
PS417_26730 -3.1 -1.9 pyrroline-5-carboxylate reductase compare
PS417_00180 -3.0 -4.0 tryptophan synthase subunit alpha compare
PS417_08230 -3.0 -3.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04195 -2.9 -6.7 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PS417_27835 -2.9 -6.8 endoribonuclease compare
PS417_23770 -2.8 -3.8 exodeoxyribonuclease V subunit alpha compare
PS417_01560 -2.8 -3.5 imidazoleglycerol-phosphate dehydratase compare
PS417_27195 -2.7 -2.8 N-acetylglutamate synthase compare
PS417_20160 -2.6 -3.3 cysteine synthase compare
PS417_20985 -2.5 -4.7 porin compare
PS417_07640 -2.4 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08125 -2.4 -1.7 prephenate dehydratase compare
PS417_04200 -2.3 -8.3 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) conserved
PS417_17360 -2.3 -11.1 D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) conserved
PS417_26040 -2.2 -4.1 malate synthase compare
PS417_21510 -2.1 -2.7 histidine kinase compare
PS417_21705 -2.1 -6.8 arginine N-succinyltransferase compare
PS417_24835 -2.0 -4.9 hypothetical protein compare
PS417_04205 -2.0 -9.0 D-galacturonate transporter (MFS superfamily) (from data) conserved
PS417_22520 -2.0 -3.7 histidine kinase compare
PS417_01605 -2.0 -2.2 phosphoglycerate mutase compare
PS417_01580 -2.0 -1.8 imidazole glycerol phosphate synthase compare
PS417_16570 -2.0 -9.4 isocitrate lyase compare
PS417_10985 -1.9 -1.6 NADH:flavin oxidoreductase compare
PS417_04365 -1.9 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01210 -1.8 -8.9 hypothetical protein compare
PS417_08205 -1.7 -5.1 acetyltransferase compare
PS417_21700 -1.7 -6.0 arginine N-succinyltransferase compare
PS417_04210 -1.6 -5.7 Galactarate dehydratase (EC 4.2.1.42) (from data) conserved
PS417_27435 -1.6 -6.2 polyphosphate kinase compare
PS417_08200 -1.6 -4.3 hypothetical protein compare
PS417_27010 -1.5 -7.1 threonine dehydratase compare
PS417_27035 -1.5 -3.3 FAD-linked oxidase compare
PS417_13510 -1.5 -1.9 polyketide cyclase compare
PS417_17365 -1.4 -5.3 galactaro-1,5-lactonase (from data) conserved
PS417_24935 -1.4 -1.2 hypothetical protein compare
PS417_18690 -1.4 -3.2 aromatic amino acid aminotransferase compare
PS417_16195 -1.4 -1.7 AraC family transcriptional regulator compare
PS417_26725 -1.4 -3.1 hypothetical protein compare
PS417_03145 -1.3 -3.0 acetyl-CoA acetyltransferase compare
PS417_08195 -1.3 -6.9 hypothetical protein compare
PS417_23900 -1.3 -8.7 poly(A) polymerase compare
PS417_09915 -1.3 -2.1 hypothetical protein compare
PS417_07595 -1.3 -3.3 PasA protein compare
PS417_07170 -1.3 -2.5 hypothetical protein compare
PS417_23950 -1.2 -4.2 polynucleotide phosphorylase/polyadenylase compare
PS417_08225 -1.2 -5.0 acetolactate synthase compare
PS417_13165 -1.2 -2.6 peroxidase compare
PS417_21125 -1.2 -7.1 phosphoadenosine phosphosulfate reductase compare
PS417_08540 -1.2 -3.4 RNA helicase compare
PS417_20665 -1.2 -5.3 hypothetical protein compare
PS417_18425 -1.1 -1.7 sporulation protein compare
PS417_21690 -1.1 -4.0 N-succinylarginine dihydrolase compare
PS417_14775 -1.1 -3.4 major facilitator transporter compare
PS417_19425 -1.1 -1.2 allantoicase compare
PS417_03100 -1.1 -1.3 pilus assembly protein compare
PS417_22495 -1.0 -4.1 histidine triad (HIT) protein compare
PS417_06200 -1.0 -4.0 protein-PII uridylyltransferase compare
PS417_21630 -1.0 -2.6 magnesium transporter compare
PS417_18590 -1.0 -1.8 SAM-dependent methyltransferase compare
PS417_08220 -1.0 -1.0 epimerase compare
PS417_01965 -1.0 -1.6 fimbriae biosynthesis protein compare
PS417_12310 -1.0 -5.8 methionine synthase compare
PS417_05985 -1.0 -2.6 chemotaxis protein CheY compare
PS417_24765 -0.9 -1.9 membrane protein compare
PS417_27870 -0.9 -3.1 ATP-dependent DNA helicase RecG compare
PS417_03385 -0.9 -1.3 flavin reductase compare
PS417_08130 -0.9 -2.0 aspartate aminotransferase compare
PS417_26990 -0.9 -1.5 RNA pyrophosphohydrolase compare
PS417_10535 -0.9 -3.9 hypothetical protein compare
PS417_16490 -0.9 -2.1 cell division protein FtsK compare
PS417_22175 -0.9 -1.6 amino acid transporter LysE compare
PS417_05455 -0.9 -4.3 XRE family transcriptional regulator compare
PS417_20620 -0.9 -4.0 glycosyl transferase family 2 compare
PS417_27875 -0.9 -5.4 histidine kinase compare
PS417_09470 -0.9 -1.1 hypothetical protein compare
PS417_13800 -0.9 -1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13445 -0.8 -1.6 D-aminopeptidase compare
PS417_16990 -0.8 -4.0 acyl-CoA dehydrogenase compare
PS417_08580 -0.8 -4.3 histidine kinase compare
PS417_23615 -0.8 -1.6 sulfate transporter compare
PS417_09930 -0.8 -1.8 hypothetical protein compare
PS417_21625 -0.8 -1.1 DNA-binding protein compare
PS417_20030 -0.8 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_26175 -0.8 -1.0 sarcosine oxidase subunit gamma compare
PS417_12935 -0.8 -2.6 RNA polymerase sigma factor compare
PS417_27610 -0.8 -3.0 hypothetical protein compare
PS417_20480 -0.8 -2.4 hypothetical protein compare
PS417_12355 -0.8 -1.5 magnesium chelatase compare
PS417_17490 -0.8 -2.0 ABC transporter ATP-binding protein compare
PS417_24125 -0.8 -3.2 hypothetical protein compare
PS417_18310 -0.8 -1.3 hypothetical protein compare
PS417_00160 -0.8 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_23375 -0.8 -1.7 cytochrome C oxidase compare
PS417_24630 -0.8 -2.0 ATP-binding protein compare
PS417_22570 -0.8 -0.9 H-NS histone compare
PS417_26260 -0.8 -1.2 hypothetical protein compare
PS417_01995 -0.8 -0.9 hypothetical protein compare
PS417_19600 -0.8 -0.7 exonuclease compare
PS417_00565 -0.7 -2.9 NAD(P) transhydrogenase compare
PS417_10405 -0.7 -1.0 filamentous hemagglutinin compare
PS417_26985 -0.7 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23775 -0.7 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_06895 -0.7 -2.6 DNA-binding protein compare
PS417_23390 -0.7 -3.5 ubiquinol oxidase subunit II compare
PS417_05570 -0.7 -2.0 DeoR faimly transcriptional regulator compare
PS417_07165 -0.7 -2.7 dihydrodipicolinate synthase compare
PS417_20340 -0.7 -1.6 hypothetical protein compare
PS417_27605 -0.7 -3.0 hypothetical protein compare
PS417_17565 -0.7 -2.5 branched-chain amino acid aminotransferase compare
PS417_19955 -0.7 -1.7 hypothetical protein compare
PS417_04270 -0.7 -4.7 ribonuclease G compare
PS417_09210 -0.7 -1.2 TetR family transcriptional regulator compare
PS417_00085 -0.7 -1.7 16S rRNA methyltransferase compare
PS417_05840 -0.7 -2.3 LuxR family transcriptional regulator compare
PS417_16080 -0.7 -2.1 AraC family transcriptional regulator compare
PS417_15095 -0.7 -1.7 hypothetical protein compare
PS417_26755 -0.7 -1.3 nucleoside-triphosphate diphosphatase compare
PS417_24370 -0.7 -0.8 (2Fe-2S)-binding protein compare
PS417_13425 -0.7 -1.3 cupin compare
PS417_09220 -0.7 -1.6 cupin compare
PS417_08860 -0.7 -2.1 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_21655 -0.7 -1.2 aspartate kinase compare
PS417_14075 -0.7 -1.8 hypothetical protein compare
PS417_01635 -0.7 -3.1 nitrogen regulation protein NR(I) compare
PS417_06195 -0.7 -3.5 succinyldiaminopimelate aminotransferase compare
PS417_18915 -0.7 -1.2 hypothetical protein compare
PS417_12195 -0.7 -2.9 ABC transporter permease compare
PS417_09235 -0.7 -0.8 molecular chaperone compare
PS417_17515 -0.7 -2.6 GfdT protein compare
PS417_27590 -0.7 -3.1 hypothetical protein compare
PS417_15725 -0.7 -2.9 nitrate/nitrite transporter NarK compare
PS417_03925 -0.7 -2.4 nicotinate-nucleotide pyrophosphorylase compare
PS417_21465 -0.7 -2.4 septum formation inhibitor Maf compare
PS417_17855 -0.7 -2.0 major facilitator transporter compare
PS417_21750 -0.7 -5.4 acetyl-CoA synthetase compare
PS417_17450 -0.7 -2.7 amino acid ABC transporter substrate-binding protein compare
PS417_06030 -0.6 -2.3 hypothetical protein compare
PS417_06680 -0.6 -4.4 nuclease PIN compare
PS417_22840 -0.6 -1.4 tRNA-Met compare
PS417_01435 -0.6 -0.9 hypothetical protein compare
PS417_04425 -0.6 -4.0 histidinol-phosphate aminotransferase compare
PS417_17485 -0.6 -2.5 membrane protein compare
PS417_01195 -0.6 -1.8 RNA-binding protein S4 compare
PS417_09340 -0.6 -2.8 spermidine/putrescine ABC transporter ATP-binding protein compare
PS417_14200 -0.6 -1.2 hypothetical protein compare
PS417_11475 -0.6 -2.3 membrane protein compare
PS417_11800 -0.6 -2.9 LysR family transcriptional regulator compare
PS417_01080 -0.6 -2.2 acyl-CoA dehydrogenase compare
PS417_04650 -0.6 -1.0 D-alanine--D-alanine ligase compare
PS417_27940 -0.6 -1.0 type VI secretion protein compare
PS417_15935 -0.6 -1.0 Rrf2 family transcriptional regulator compare
PS417_14985 -0.6 -1.7 Fe-S protein compare
PS417_10575 -0.6 -1.4 DNA alkylation repair protein compare
PS417_07245 -0.6 -1.7 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_02555 -0.6 -5.1 exoribonuclease R compare
PS417_23385 -0.6 -3.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_18205 -0.6 -1.3 aldehyde dehydrogenase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pseudomonas simiae WCS417

For carbon source D-Galacturonic Acid monohydrate across organisms