Experiment set2IT067 for Agrobacterium fabrum C58

Compare to:

Melibiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1308 -7.2 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0400 -7.1 -4.9 orotate phosphoribosyltransferase compare
Atu0703 -6.9 -4.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0038 -6.9 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -6.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1140 -6.6 -6.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2726 -6.4 -23.5 pyruvate carboxylase compare
Atu2791 -6.4 -8.8 3-isopropylmalate dehydrogenase compare
Atu0537 -6.3 -4.4 histidinol dehydrogenase compare
Atu3707 -6.2 -4.3 phosphoserine aminotransferase compare
Atu2709 -6.2 -20.6 3-isopropylmalate dehydratase, large subunit compare
Atu3706 -6.1 -9.4 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -6.1 -15.1 2-isopropylmalate synthase compare
Atu1141 -6.0 -7.0 Phosphoribosylglycinamide synthetase compare
Atu0099 -6.0 -13.4 prephenate dehydratase compare
Atu1205 -6.0 -13.9 threonine dehydratase compare
Atu0432 -6.0 -10.7 O-succinylhomoserine sulfhydrylase compare
Atu1687 -5.8 -12.2 anthranilate phosphoribosyltransferase compare
Atu1588 -5.8 -11.1 homoserine dehydrogenase compare
Atu2036 -5.7 -17.2 acetolactate synthase III, large subunit compare
Atu2289 -5.7 -20.3 anthranilate synthase component I and II compare
Atu2040 -5.6 -6.7 phosphoserine phosphatase compare
Atu1844 -5.5 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1307 -5.5 -8.0 dihydroorotase compare
Atu0679 -5.5 -9.1 ATP phosphoribosyltransferase compare
Atu0298 -5.5 -9.8 orotidine 5 compare
Atu4659 -5.5 -12.0 AraC family transcriptional regulator compare
Atu1688 -5.4 -8.2 indole-3-glycerol-phosphate synthase compare
Atu2718 -5.4 -9.7 homoserine O-succinyltransferase compare
Atu0043 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu0017 -5.2 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3754 -5.2 -8.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu4664 -5.0 -14.2 oligopeptide ABC transporter ATPase compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1850 -4.9 -6.0 phosphoribosylformylglycinamidine synthetase II compare
Atu3783 -4.9 -18.0 glutamate synthase subunit beta compare
Atu3483 -4.9 -8.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4662 -4.9 -12.5 oligopeptide ABC transporter permease compare
Atu2650 -4.9 -12.2 glycerol-3-phosphate dehydrogenase compare
Atu3885 -4.9 -12.2 inositol monophosphatase compare
Atu4665 -4.9 -11.8 alpha-galactosidase compare
Atu4663 -4.9 -9.9 oligopeptide ABC transporter permease compare
Atu0647 -4.8 -7.4 phosphoribosylamine--glycine ligase compare
Atu4661 -4.8 -23.5 alpha-galactoside ABC transporter substrate-binding protein compare
Atu1030 -4.8 -3.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2015 -4.7 -17.2 aminotransferase compare
Atu0486 -4.6 -7.1 dihydroorotate dehydrogenase compare
Atu0399 -4.6 -9.6 dihydroorotase compare
Atu2790 -4.6 -3.4 3-isopropylmalate dehydratase, small subunit compare
Atu1845 -4.5 -3.8 phosphoribosylformylglycinamidine synthase I compare
Atu2747 -4.4 -16.1 hypothetical protein compare
Atu1075 -4.4 -9.8 amidophosphoribosyltransferase compare
Atu4660 -4.2 -15.3 alpha-galactosidase compare
Atu0678 -4.2 -6.2 histidyl-tRNA synthetase compare
Atu3755 -4.2 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3482 -4.0 -9.4 pantoate--beta-alanine ligase compare
Atu0030 -4.0 -2.6 phosphocarrier protein HPr compare
Atu3739 -3.8 -4.3 phosphoglycerate kinase compare
Atu3784 -3.8 -25.6 glutamate synthase large subunit compare
Atu0641 -3.7 -5.3 hypothetical protein compare
Atu3731 -3.6 -12.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1463 -3.4 -8.4 glycine cleavage system component H compare
Atu0876 -3.4 -2.8 superoxide dismutase compare
Atu1462 -3.2 -14.2 glycine cleavage system protein P2 compare
Atu1456 -3.2 -13.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0501 -3.2 -15.8 acyl-CoA dehydrogenase compare
Atu1686 -3.2 -18.3 peptidyl-prolyl cis-trans isomerse D compare
Atu0502 -3.1 -7.8 acetyl-CoA acetyltransferase compare
Atu1464 -3.1 -11.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu0503 -3.1 -17.5 enoyl-CoA hydratase compare
Atu2548 -3.1 -15.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3219 -3.0 -13.5 dihydroxy-acid dehydratase compare
Atu1359 -2.8 -1.8 dnaK deletion suppressor protein compare
Atu0704 -2.8 -13.1 2-dehydro-3-deoxygalactonate kinase compare
Atu1446 -2.7 -3.3 two component response regulator compare
Atu2155 -2.7 -17.7 methionine synthase compare
Atu4098 -2.5 -14.2 quinolinate synthetase compare
Atu0792 -2.5 -6.3 hypothetical protein compare
Atu3469 -2.4 -3.5 phosphoglyceromutase compare
Atu4096 -2.4 -7.5 nicotinate-nucleotide pyrophosphorylase compare
Atu2205 -2.3 -7.2 transcriptional regulator, MarR family compare
Atu1589 -2.2 -5.6 aminotransferase, class I compare
Atu1454 -2.1 -8.5 siroheme synthase compare
Atu4097 -2.1 -11.3 L-aspartate oxidase compare
Atu1685 -2.0 -1.7 hypothetical protein compare
Atu1620 -2.0 -9.9 triosephosphate isomerase compare
Atu1455 -1.9 -3.7 hypothetical protein compare
Atu0705 -1.9 -7.2 3-oxoacyl-(acyl carrier protein) reductase compare
Atu2554 -1.9 -3.2 lysyl-tRNA synthetase compare
Atu1748 -1.9 -8.5 NIFU-like protein compare
Atu3997 -1.8 -13.0 biotin synthetase compare
Atu3999 -1.8 -4.0 dithiobiotin synthetase compare
Atu1113 -1.7 -4.9 dehydrogenase compare
Atu0405 -1.6 -12.1 long-chain-fatty-acid-CoA-ligase compare
Atu1604 -1.6 -9.9 poly-beta-hydroxybutyrate synthase compare
Atu0029 -1.5 -4.4 S-adenosylhomocysteine hydrolase compare
Atu8115 -1.5 -3.8 Hypothetical Protein compare
Atu0322 -1.5 -6.2 enoyl CoA hydratase compare
Atu1457 -1.5 -2.0 hypothetical protein compare
Atu0536 -1.4 -5.6 hypothetical protein compare
Atu2209 -1.4 -5.6 pyrroline-5-carboxylate reductase compare
Atu3998 -1.4 -8.9 8-amino-7-oxononanoate synthase compare
Atu1028 -1.4 -2.8 hypothetical protein compare
Atu4173 -1.3 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu3763 -1.3 -1.7 hypothetical protein compare
Atu6114 -1.3 -2.2 hypothetical protein compare
Atu4000 -1.3 -9.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2286 -1.3 -2.4 hypothetical protein compare
Atu0225 -1.3 -1.3 hypothetical protein compare
Atu1774 -1.3 -6.6 ABC transporter, substrate binding protein (peptide) compare
Atu3486 -1.2 -2.1 DeoR family transcriptional regulator compare
Atu0803 -1.2 -8.7 pyruvate,orthophosphate dikinase compare
Atu2800 -1.2 -2.2 precorrin-3B C17-methyltransferase compare
Atu3732 -1.1 -5.2 hemolysin compare
Atu2127 -1.1 -5.2 L-carnitine dehydratase compare
Atu4001 -1.1 -6.0 3-oxoacyl-ACP synthase compare
Atu2770 -1.1 -5.1 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu0188 -1.1 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1810 -1.1 -1.5 hypothetical protein compare
Atu1542 -1.1 -5.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2532 -1.1 -4.8 transcriptional regulator, MarR family compare
Atu3727 -1.1 -3.4 hypothetical protein compare
Atu1219 -1.0 -1.2 hypothetical protein compare
Atu5540 -1.0 -1.0 hypothetical protein compare
Atu0190 -1.0 -6.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0189 -1.0 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0601 -1.0 -7.1 oxidoreductase compare
Atu3183 -1.0 -1.1 hypothetical protein compare
Atu3289 -1.0 -2.8 thiamine-phosphate pyrophosphorylase compare
Atu0434 -1.0 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0533 -1.0 -3.4 putative inhibitor of septum formation compare
Atu4176 -1.0 -5.2 hypothetical protein compare
Atu2809 -1.0 -6.6 cobalamin biosynthesis protein compare
Atu2808 -1.0 -5.3 cobyric acid synthase compare
Atu0421 -1.0 -1.5 ABC transporter, membrane spanning protein compare
Atu3496 -1.0 -3.5 hypothetical protein compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu0524 -0.9 -3.9 transcriptional regulator, LuxR family compare
Atu2801 -0.9 -3.3 precorrin-2 C20 methyltransferase compare
Atu2569 -0.9 -5.5 thiamine biosynthesis protein compare
Atu2795 -0.9 -4.4 cobalamin biosynthetic protein compare
Atu1572 -0.9 -4.2 hydrolase compare
Atu3290 -0.9 -4.5 phosphomethylpyrimidine kinase compare
Atu2799 -0.9 -3.5 precorrin-6x reductase compare
Atu2802 -0.9 -4.4 precorrin-8X methylmutase compare
Atu0749 -0.8 -2.1 biotin synthesis BioY protein compare
Atu2555 -0.8 -3.1 L-lysine 2,3-aminomutase compare
Atu0368 -0.8 -3.4 tRNA pseudouridine synthase I compare
Atu3280 -0.8 -5.2 GntR family transcriptional regulator compare
Atu5470 -0.8 -1.6 hypothetical protein compare
Atu4711 -0.8 -4.8 two component sensor kinase compare
Atu4773 -0.8 -1.3 two component response regulator compare
Atu1770 -0.8 -4.9 glutamine synthetase compare
Atu2803 -0.8 -2.8 Cobalamin biosynthesis associated protein compare
Atu3733 -0.8 -1.1 hypothetical protein compare
Atu0602 -0.8 -4.0 glutamine synthetase compare
Atu0590 -0.8 -3.5 transcriptional regulator repressor compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu1546 -0.8 -2.0 transcriptional regulator, MerR family compare
Atu3712 -0.8 -1.4 hypothetical protein compare
Atu2804 -0.8 -4.9 cobaltochelatase subunit compare
Atu0357 -0.7 -4.4 phosphate starvation inducible protein compare
Atu1182 -0.7 -1.3 hypothetical protein compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu6195 -0.7 -2.6 conserved hypothetical protein compare
Atu2442 -0.7 -1.8 hypothetical protein compare
Atu0184 -0.7 -2.3 glucokinase compare
Atu6098 -0.7 -0.6 transcriptional regulator, HTH family compare
Atu3908 -0.7 -4.4 GntR family transcriptional regulator compare
Atu0862 -0.7 -3.6 hypothetical protein compare
Atu6189 -0.7 -0.6 protein secretion chaperone compare
Atu0566 -0.7 -1.3 hypothetical protein compare
Atu1098 -0.7 -1.3 hypothetical protein compare
Atu2793 -0.7 -1.7 cobyrinic acid a,c-diamide synthase compare
Atu2633 -0.7 -1.3 RhtB family transporter compare
Atu1021 -0.7 -1.6 outer membrane protein compare
Atu2805 -0.7 -3.4 cobalamin synthesis protein compare
Atu8166 -0.7 -2.4 hypothetical protein compare
Atu2123 -0.7 -2.0 methylenetetrahydrofolate reductase compare
Atu0331 -0.7 -1.2 sigma-54 modulation protein compare
Atu1678 -0.7 -3.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu4179 -0.7 -3.7 hypothetical protein compare
Atu2662 -0.7 -1.2 acetyltransferase compare
Atu1258 -0.6 -3.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu0677 -0.6 -1.7 hypothetical protein compare
Atu5125 -0.6 -2.3 GntR family transcriptional regulator compare
Atu3337 -0.6 -3.8 LacI family transcriptional regulator compare
Atu2719 -0.6 -3.8 aldose epimerase compare
Atu1737 -0.6 -1.7 hypothetical protein compare
Atu5427 -0.6 -1.4 hypothetical protein compare
Atu2200 -0.6 -2.0 cold shock protein compare
Atu3495 -0.6 -4.1 diguanylate cyclase compare
Atu8020 -0.6 -1.6 hypothetical protein compare
Atu1717 -0.6 -4.1 long-chain fatty acid transport protein compare
Atu0701 -0.6 -3.6 GGDEF family protein compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2692 -0.6 -1.9 intracellular septation protein compare
Atu0205 -0.6 -3.7 methylmalonate-semialdehyde dehydrogenase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Melibiose in Agrobacterium fabrum C58

For carbon source Melibiose across organisms