Experiment set2IT066 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with D-Cycloserine 0.064 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Echvi_0363 +3.8 23.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Echvi_0634 +2.9 10.9 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_1046 +2.8 10.5 Glutamate decarboxylase and related PLP-dependent proteins compare
Echvi_1049 +2.7 7.7 Lactoylglutathione lyase and related lyases compare
Echvi_1256 +2.7 19.6 Predicted transcriptional regulators compare
Echvi_0852 +2.6 22.2 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_1211 +2.6 16.5 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain compare
Echvi_1535 +2.6 5.1 Glutamate dehydrogenase/leucine dehydrogenase compare
Echvi_0114 +2.5 8.2 N-acetylmuramoyl-L-alanine amidase compare
Echvi_0857 +2.5 16.1 hypothetical protein compare
Echvi_0724 +2.5 6.1 hypothetical protein compare
Echvi_0299 +2.5 17.7 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_3142 +2.4 2.7 hypothetical protein compare
Echvi_2824 +2.4 16.3 hypothetical protein compare
Echvi_0986 +2.4 10.6 Rrf2 family protein compare
Echvi_2309 +2.4 18.8 Outer membrane protein/protective antigen OMA87 compare
Echvi_3863 +2.4 4.5 Glycosyltransferase compare
Echvi_2253 +2.3 11.7 hypothetical protein compare
Echvi_4083 +2.3 21.9 hypothetical protein compare
Echvi_3381 +2.3 20.4 Pregnancy-associated plasma protein-A. compare
Echvi_4076 +2.3 7.2 Membrane-bound metallopeptidase compare
Echvi_0298 +2.3 17.1 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_3704 +2.2 9.0 hypothetical protein compare
Echvi_0655 +2.2 14.8 hypothetical protein compare
Echvi_0674 +2.2 16.1 hypothetical protein compare
Echvi_1047 +2.2 7.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_0622 +2.2 11.2 gliding motility-associated protein GldL compare
Echvi_3703 +2.2 6.8 hypothetical protein compare
Echvi_1140 +2.2 11.0 Response regulator of the LytR/AlgR family compare
Echvi_0623 +2.1 17.8 gliding motility-associated lipoprotein GldK compare
Echvi_1311 +2.1 16.3 gliding motility-associated lipoprotein GldJ compare
Echvi_0169 +2.1 15.2 hypothetical protein compare
Echvi_0621 +2.1 17.4 gliding motility-associated protein GldM compare
Echvi_1517 +2.1 12.6 hypothetical protein compare
Echvi_1492 +2.1 5.9 hypothetical protein compare
Echvi_0129 +2.1 7.9 hypothetical protein compare
Echvi_0585 +2.1 6.7 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_0620 +2.1 14.6 gliding motility associated protien GldN compare
Echvi_1821 +2.1 13.8 hypothetical protein compare
Echvi_0090 +2.1 3.0 Iron-sulfur cluster assembly accessory protein compare
Echvi_0633 +2.1 8.1 hypothetical protein compare
Echvi_3702 +2.0 9.5 von Willebrand factor type A domain. compare
Echvi_1224 +2.0 12.2 gliding motility-associated lipoprotein GldD compare
Echvi_1139 +2.0 12.5 Putative regulator of cell autolysis compare
Echvi_1235 +2.0 8.6 Nitroreductase compare
Echvi_3894 +2.0 8.5 Transcriptional regulator/sugar kinase compare
Echvi_1850 +2.0 10.6 Bacterial SH3 domain. compare
Echvi_4399 +1.9 9.7 hypothetical protein compare
Echvi_0985 +1.9 7.3 Predicted membrane protein compare
Echvi_1319 +1.9 15.3 gliding motility-associated lipoprotein GldB compare
Echvi_1525 +1.9 12.1 hypothetical protein compare
Echvi_0652 +1.9 10.6 Outer membrane protein compare
Echvi_2188 +1.9 9.3 Methyltransferase domain. compare
Echvi_2860 +1.9 4.4 sugar-phosphate isomerases, RpiB/LacA/LacB family compare
Echvi_1557 +1.9 7.6 MoxR-like ATPases compare
Echvi_1146 +1.9 7.7 Predicted membrane protein compare
Echvi_1520 +1.9 6.9 Thioredoxin-like proteins and domains compare
Echvi_1482 +1.9 10.8 Outer membrane protein/protective antigen OMA87 compare
Echvi_0617 +1.8 13.9 hypothetical protein compare
Echvi_1280 +1.8 3.2 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_0300 +1.8 6.8 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_2775 +1.8 9.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_1048 +1.8 4.8 hypothetical protein compare
Echvi_4383 +1.7 1.5 hypothetical protein compare
Echvi_3477 +1.7 14.3 Outer membrane receptor proteins, mostly Fe transport compare
Echvi_3277 +1.7 3.2 Cell division protein compare
Echvi_4022 +1.7 3.6 hypothetical protein compare
Echvi_2252 +1.7 5.6 Mg-chelatase subunit ChlD compare
Echvi_2254 +1.7 5.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Echvi_4024 +1.7 4.7 hypothetical protein compare
Echvi_0128 +1.7 1.9 hypothetical protein compare
Echvi_3457 +1.6 2.6 hypothetical protein compare
Echvi_3481 +1.6 6.7 hypothetical protein compare
Echvi_1745 +1.6 6.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Echvi_3440 +1.6 3.5 bacillithiol biosynthesis deacetylase BshB1 compare
Echvi_1638 +1.6 1.4 hypothetical protein compare
Echvi_4074 +1.6 7.4 Tetratricopeptide repeat. compare
Echvi_1200 +1.6 3.7 Predicted membrane protein compare
Echvi_2199 +1.6 1.2 hypothetical protein compare
Echvi_3476 +1.5 13.0 DNA uptake lipoprotein compare
Echvi_3890 +1.5 3.9 hypothetical protein compare
Echvi_1489 +1.5 7.2 UDP-N-acetylglucosamine 2-epimerase compare
Echvi_4396 +1.5 8.2 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Echvi_0589 +1.5 6.6 hypothetical protein compare
Echvi_4402 +1.5 9.9 Periplasmic protein involved in polysaccharide export compare
Echvi_0582 +1.5 2.1 hypothetical protein compare
Echvi_0776 +1.5 8.2 Sterol desaturase compare
Echvi_4021 +1.5 6.2 Cytochrome c peroxidase compare
Echvi_1018 +1.5 4.9 Fe2+/Zn2+ uptake regulation proteins compare
Echvi_0596 +1.4 3.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_2783 +1.4 7.9 signal peptide peptidase SppA, 67K type compare
Echvi_2833 +1.4 3.5 L-serine dehydratase, iron-sulfur-dependent, beta subunit compare
Echvi_3642 +1.4 3.9 NADH:ubiquinone oxidoreductase 24 kD subunit compare
Echvi_0038 +1.4 4.8 Putative regulator of cell autolysis compare
Echvi_1287 +1.4 3.5 L-fucose isomerase and related proteins compare
Echvi_4124 +1.4 1.6 Copper chaperone compare
Echvi_3044 +1.4 3.6 hypothetical protein compare
Echvi_4622 +1.3 6.6 hypothetical protein compare
Echvi_3698 +1.3 4.4 Putative hemolysin compare
Echvi_1552 +1.3 1.4 hypothetical protein compare
Echvi_4401 +1.3 7.7 Uncharacterized protein involved in exopolysaccharide biosynthesis compare
Echvi_3857 +1.3 2.5 Bacterial membrane protein YfhO. compare
Echvi_0882 +1.3 7.3 Mismatch repair ATPase (MutS family) compare
Echvi_1789 +1.3 5.7 Protein of unknown function (DUF2480). compare
Echvi_3764 +1.3 1.9 Predicted transcriptional regulators compare
Echvi_2560 +1.3 5.5 PAS domain S-box compare
Echvi_4405 +1.3 3.5 hypothetical protein compare
Echvi_2365 +1.3 2.9 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_2463 +1.3 1.8 Translation initiation factor 1 (eIF-1/SUI1) and related proteins compare
Echvi_0599 +1.2 2.0 hypothetical protein compare
Echvi_2218 +1.2 2.3 hypothetical protein compare
Echvi_1838 +1.2 1.2 hypothetical protein compare
Echvi_2498 +1.2 3.3 Predicted ATPase involved in cell division compare
Echvi_1297 +1.2 2.1 hypothetical protein compare
Echvi_4025 +1.2 1.4 hypothetical protein compare
Echvi_3005 +1.2 3.7 hypothetical protein compare
Echvi_1847 +1.2 8.5 periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) (from data) compare
Echvi_0086 +1.2 5.9 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_3045 +1.2 4.4 hypothetical protein compare
Echvi_0484 +1.2 1.2 hypothetical protein compare
Echvi_1939 +1.2 2.9 Bacteroides conjugative transposon TraN protein compare
Echvi_2443 +1.2 3.6 hypothetical protein compare
Echvi_1220 +1.2 4.4 Tetratricopeptide repeat. compare
Echvi_1743 +1.2 2.4 alpha-L-glutamate ligases, RimK family compare
Echvi_4062 +1.2 4.9 hypothetical protein compare
Echvi_0102 +1.2 2.4 Uncharacterized conserved protein compare
Echvi_0796 +1.2 1.6 hypothetical protein compare
Echvi_0440 +1.2 1.6 DNA repair proteins compare
Echvi_0600 +1.2 4.3 L-serine dehydratase, iron-sulfur-dependent, alpha subunit compare
Echvi_2405 +1.2 6.2 Periplasmic protease compare
Echvi_0779 +1.2 3.4 hypothetical protein compare
Echvi_2606 +1.1 1.2 hypothetical protein compare
Echvi_1286 +1.1 2.7 Transketolase, N-terminal subunit compare
Echvi_1068 +1.1 3.0 Transcriptional regulators compare
Echvi_4075 +1.1 5.0 hypothetical protein compare
Echvi_4600 +1.1 2.1 Uncharacterized conserved protein compare
Echvi_0374 +1.1 5.7 Predicted membrane protein compare
Echvi_0438 +1.1 1.5 hypothetical protein compare
Echvi_0973 +1.1 3.4 hypothetical protein compare
Echvi_2402 +1.1 1.5 hypothetical protein compare
Echvi_1285 +1.1 2.1 Transketolase, C-terminal subunit compare
Echvi_3521 +1.1 7.4 Methyltransferase domain. compare
Echvi_0517 +1.1 4.2 Glycoside hydrolase 97. compare
Echvi_3311 +1.1 1.3 Transcriptional regulator/sugar kinase compare
Echvi_0676 +1.1 4.1 Predicted glycosyltransferases compare
Echvi_1170 +1.0 2.9 Predicted membrane protein compare
Echvi_1282 +1.0 4.1 ABC-type sugar transport system, ATPase component compare
Echvi_2410 +1.0 2.5 Acetyltransferases compare
Echvi_4633 +1.0 4.5 trigger factor compare
Echvi_0516 +1.0 4.8 Alpha-L-arabinofuranosidase compare
Echvi_2993 +1.0 2.1 Predicted CoA-binding protein compare
Echvi_0260 +1.0 2.1 Protein of unknown function (DUF3467). compare
Echvi_1108 +1.0 6.3 hypothetical protein compare
Echvi_0431 +1.0 1.3 hypothetical protein compare
Echvi_2358 +1.0 2.0 Uncharacterized protein, putative amidase compare
Echvi_4051 +1.0 1.2 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) compare
Echvi_0813 +1.0 2.1 hypothetical protein compare
Echvi_1849 +1.0 4.0 Sugar phosphate isomerases/epimerases compare
Echvi_4403 +1.0 3.1 Predicted endonuclease containing a URI domain compare
Echvi_1090 +1.0 3.2 Predicted membrane protein compare
Echvi_2271 +1.0 3.2 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_3549 +1.0 3.2 Mn-dependent transcriptional regulator compare
Echvi_4099 +1.0 1.3 hypothetical protein compare
Echvi_4101 +0.9 3.4 hypothetical protein compare
Echvi_1131 +0.9 4.2 hypothetical protein compare
Echvi_0362 +0.9 2.2 hypothetical protein compare
Echvi_1181 +0.9 4.4 Uridine kinase compare
Echvi_4465 +0.9 2.4 hypothetical protein compare
Echvi_2215 +0.9 3.4 ADP-ribose pyrophosphatase compare
Echvi_3046 +0.9 3.7 hypothetical protein compare
Echvi_4495 +0.9 2.7 Rrf2 family protein compare
Echvi_0626 +0.9 3.8 hypothetical protein compare
Echvi_4023 +0.9 3.1 Cytochrome c peroxidase compare
Echvi_0082 +0.9 3.4 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_4020 +0.9 2.5 hypothetical protein compare
Echvi_3893 +0.9 2.9 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase compare
Echvi_2183 +0.9 2.7 hypothetical protein compare
Echvi_1563 +0.9 1.6 Uncharacterized homolog of Blt101 compare
Echvi_2503 +0.9 1.4 hypothetical protein compare
Echvi_0104 +0.9 1.4 Iron-sulfur cluster assembly accessory protein compare
Echvi_0287 +0.9 2.5 RNA polymerase sigma factor, sigma-70 family compare
Echvi_1436 +0.9 3.4 hypothetical protein compare
Echvi_0368 +0.9 1.3 hypothetical protein compare
Echvi_4155 +0.9 2.7 DNA repair proteins compare
Echvi_1771 +0.9 4.2 Glycerol-3-phosphate dehydrogenase compare
Echvi_1764 +0.9 1.2 hypothetical protein compare
Echvi_4464 +0.9 2.6 hypothetical protein compare
Echvi_1538 +0.9 4.7 hypothetical protein compare
Echvi_0760 +0.9 2.8 Predicted heme/steroid binding protein compare
Echvi_3287 +0.9 1.7 hypothetical protein compare
Echvi_1511 +0.9 3.2 5,10-methenyltetrahydrofolate synthetase compare
Echvi_3229 +0.8 1.8 hypothetical protein compare
Echvi_3480 +0.8 1.7 Biopolymer transport protein compare
Echvi_4485 +0.8 1.9 Transposase and inactivated derivatives compare
Echvi_1848 +0.8 3.9 periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) (from data) compare
Echvi_0878 +0.8 2.3 cytochrome c nitrate reductase, small subunit compare
Echvi_4126 +0.8 2.5 AraC-type DNA-binding domain-containing proteins compare
Echvi_1246 +0.8 3.9 gliding motility-associated protein GldE compare
Echvi_1255 +0.8 2.6 Fatty acid hydroxylase superfamily. compare
Echvi_1710 +0.8 3.2 hypothetical protein compare


Specific Phenotypes

For 35 genes in this experiment

For stress D-Cycloserine in Echinicola vietnamensis KMM 6221, DSM 17526

For stress D-Cycloserine across organisms