Experiment set2IT065 for Pseudomonas sp. RS175

Compare to:

L-tyrosine carbon source 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_03227 +2.0 13.5 Signal transduction histidine-protein kinase BarA compare
PFR28_01410 +2.0 11.4 Response regulator GacA compare
PFR28_03533 +2.0 2.5 DNA-binding protein HU 1 compare
PFR28_04831 +1.8 4.5 RNA pyrophosphohydrolase compare
PFR28_00427 +1.8 15.3 RNA polymerase sigma factor RpoS compare
PFR28_04979 +1.7 10.8 Glucans biosynthesis glucosyltransferase H compare
PFR28_03079 +1.4 9.5 Sensor histidine kinase RcsC compare
PFR28_01173 +1.3 1.8 hypothetical protein compare
PFR28_00828 +1.2 10.5 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_03077 +1.2 10.7 Vitamin B12 transporter BtuB compare
PFR28_04978 +1.2 5.9 Glucans biosynthesis protein G compare
PFR28_04233 +1.2 4.4 hypothetical protein compare
PFR28_04115 +1.2 2.4 Protein FecR compare
PFR28_04598 +1.2 5.7 hypothetical protein compare
PFR28_03951 +1.1 1.5 hypothetical protein compare
PFR28_03106 +1.1 6.8 hypothetical protein compare
PFR28_03417 +1.1 1.8 hypothetical protein compare
PFR28_04830 +1.1 7.8 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_04927 +1.0 1.7 PanD regulatory factor compare
PFR28_04866 +1.0 1.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_00296 +1.0 3.1 Cytoskeleton protein RodZ compare
PFR28_01748 +1.0 2.7 hypothetical protein compare
PFR28_00451 +1.0 1.7 hypothetical protein compare
PFR28_02686 +1.0 3.5 Prophage DNA-packing protein NohA compare
PFR28_01042 +0.9 1.2 hypothetical protein compare
PFR28_05246 +0.9 1.5 hypothetical protein compare
PFR28_02009 +0.9 1.3 HTH-type transcriptional regulator PgrR compare
PFR28_03105 +0.9 7.0 hypothetical protein compare
PFR28_01251 +0.9 1.7 ECF RNA polymerase sigma factor EcfG compare
PFR28_02547 +0.9 1.5 Phosphoglycolate phosphatase compare
PFR28_01706 +0.9 1.2 hypothetical protein compare
PFR28_04584 +0.9 2.0 putative chromosome-partitioning protein ParB compare
PFR28_01891 +0.9 3.0 HTH-type transcriptional regulator GltR compare
PFR28_00095 +0.8 1.8 tRNA-Thr compare
PFR28_00709 +0.8 1.4 hypothetical protein compare
PFR28_00176 +0.8 0.9 Lipopolysaccharide export system protein LptC compare
PFR28_03067 +0.8 1.4 hypothetical protein compare
PFR28_04977 +0.8 2.2 D-aminoacyl-tRNA deacylase compare
PFR28_00452 +0.8 1.1 hypothetical protein compare
PFR28_00169 +0.8 2.4 Phosphocarrier protein NPr compare
PFR28_02227 +0.8 3.6 hypothetical protein compare
PFR28_05131 +0.8 2.3 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 compare
PFR28_00049 +0.8 3.3 Oligopeptide transport ATP-binding protein OppD compare
PFR28_05000 +0.7 1.3 Cell division protein FtsN compare
PFR28_02485 +0.7 2.5 hypothetical protein compare
PFR28_03634 +0.7 1.7 hypothetical protein compare
PFR28_00613 +0.7 0.8 hypothetical protein compare
PFR28_01485 +0.7 2.1 hypothetical protein compare
PFR28_01979 +0.7 1.9 hypothetical protein compare
PFR28_05111 +0.7 3.8 Motility protein B compare
PFR28_05075 +0.7 5.0 hypothetical protein compare
PFR28_01347 +0.7 1.7 hypothetical protein compare
PFR28_03404 +0.7 2.2 7-carboxy-7-deazaguanine synthase compare
PFR28_03724 +0.7 2.8 Glucose-6-phosphate isomerase compare
PFR28_03701 +0.7 1.6 hypothetical protein compare
PFR28_03191 +0.7 0.5 hypothetical protein compare
PFR28_01387 +0.7 1.4 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_01934 +0.7 1.8 Creatinine amidohydrolase compare
PFR28_03696 +0.7 3.6 hypothetical protein compare
PFR28_00990 +0.7 1.4 Free methionine-R-sulfoxide reductase compare
PFR28_02809 +0.7 1.3 Glucose 1-dehydrogenase 1 compare
PFR28_01616 +0.7 1.6 HTH-type transcriptional regulator YofA compare
PFR28_03916 +0.7 1.6 hypothetical protein compare
PFR28_02032 +0.7 2.6 hypothetical protein compare
PFR28_02384 +0.7 2.2 hypothetical protein compare
PFR28_03687 +0.7 3.8 Intermembrane transport protein PqiA compare
PFR28_00602 +0.7 1.0 hypothetical protein compare
PFR28_02167 +0.7 1.5 hypothetical protein compare
PFR28_03640 +0.7 2.9 Hypoxanthine-guanine phosphoribosyltransferase compare
PFR28_03192 +0.7 0.9 hypothetical protein compare
PFR28_00845 +0.7 2.9 Flagellar biosynthetic protein FliP compare
PFR28_02913 +0.7 1.7 hypothetical protein compare
PFR28_03301 +0.7 2.5 putative protein YqjZ compare
PFR28_04638 +0.7 3.4 Proton/glutamate-aspartate symporter compare
PFR28_02706 +0.6 2.1 hypothetical protein compare
PFR28_02252 +0.6 3.5 hypothetical protein compare
PFR28_02684 +0.6 1.7 hypothetical protein compare
PFR28_03686 +0.6 5.0 Intermembrane transport protein YebT compare
PFR28_05023 +0.6 0.9 hypothetical protein compare
PFR28_00823 +0.6 3.5 Flagellin compare
PFR28_04960 +0.6 2.5 hypothetical protein compare
PFR28_00657 +0.6 1.4 Glutathione transferase FosA compare
PFR28_03386 +0.6 1.5 Major cold shock protein CspA compare
PFR28_04713 +0.6 1.2 putative protein YqjD compare
PFR28_03961 +0.6 2.2 dTDP-4-dehydrorhamnose reductase compare
PFR28_01111 +0.6 2.3 3-ketoacyl-CoA thiolase compare
PFR28_01381 +0.6 1.6 hypothetical protein compare
PFR28_03688 +0.6 4.2 hypothetical protein compare
PFR28_00700 +0.6 2.6 Outer membrane protein assembly factor BamC compare
PFR28_00125 +0.6 2.3 Dipeptide transport ATP-binding protein DppD compare
PFR28_02569 +0.6 1.9 Glutathione-regulated potassium-efflux system protein KefC compare
PFR28_00498 +0.6 1.0 Cold shock protein CapB compare
PFR28_02830 +0.6 0.8 Putative aminoacrylate hydrolase RutD compare
PFR28_02419 +0.6 2.5 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW compare
PFR28_05025 +0.6 1.4 hypothetical protein compare
PFR28_03023 +0.6 2.2 Isoquinoline 1-oxidoreductase subunit alpha compare
PFR28_04887 +0.6 1.2 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03251 +0.6 4.9 Flagellar hook protein FlgE compare
PFR28_01897 +0.6 0.9 HTH-type transcriptional regulator MtrA compare
PFR28_01415 +0.6 1.7 hypothetical protein compare
PFR28_02941 +0.6 1.1 hypothetical protein compare
PFR28_02726 +0.6 0.5 hypothetical protein compare
PFR28_02663 +0.6 1.9 hypothetical protein compare
PFR28_02486 +0.6 0.9 hypothetical protein compare
PFR28_03240 +0.6 0.8 IS110 family transposase ISPfl1 compare
PFR28_04154 +0.6 1.7 HTH-type transcriptional regulator CdhR compare
PFR28_01315 +0.6 0.7 hypothetical protein compare
PFR28_03760 +0.6 2.0 hypothetical protein compare
PFR28_01587 +0.6 0.7 hypothetical protein compare
PFR28_03259 +0.6 1.3 hypothetical protein compare
PFR28_01690 +0.6 1.6 hypothetical protein compare
PFR28_05024 +0.6 2.2 hypothetical protein compare
PFR28_02008 +0.6 1.8 hypothetical protein compare
PFR28_01962 +0.6 2.1 Protein hit compare
PFR28_04900 +0.6 4.1 hypothetical protein compare
PFR28_03034 +0.6 2.8 putative ABC transporter ATP-binding protein YadG compare
PFR28_02884 +0.6 2.0 Trans-aconitate 2-methyltransferase compare
PFR28_02348 +0.6 2.8 Xylose isomerase compare
PFR28_01935 +0.6 2.7 Putative aldehyde dehydrogenase compare
PFR28_03308 +0.6 1.0 hypothetical protein compare
PFR28_01697 +0.5 2.1 hypothetical protein compare
PFR28_00808 +0.5 2.6 hypothetical protein compare
PFR28_02509 +0.5 1.7 hypothetical protein compare
PFR28_04641 +0.5 1.4 hypothetical protein compare
PFR28_05120 +0.5 3.2 tRNA dimethylallyltransferase compare
PFR28_00833 +0.5 2.8 Flagellar motor switch protein FliG compare
PFR28_01592 +0.5 1.5 hypothetical protein compare
PFR28_01808 +0.5 1.0 hypothetical protein compare
PFR28_02338 +0.5 1.4 hypothetical protein compare
PFR28_03387 +0.5 0.9 hypothetical protein compare
PFR28_00442 +0.5 1.4 hypothetical protein compare
PFR28_00832 +0.5 3.4 Flagellar M-ring protein compare
PFR28_01578 +0.5 0.9 HTH-type transcriptional regulator LutR compare
PFR28_02640 +0.5 2.0 2-oxo-tetronate isomerase compare
PFR28_02990 +0.5 1.3 hypothetical protein compare
PFR28_01169 +0.5 1.8 hypothetical protein compare
PFR28_03795 +0.5 1.4 Large-conductance mechanosensitive channel compare
PFR28_00928 +0.5 1.0 putative sugar transferase EpsL compare
PFR28_02774 +0.5 1.8 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase compare
PFR28_03252 +0.5 2.5 Basal-body rod modification protein FlgD compare
PFR28_00847 +0.5 2.4 Flagellar biosynthetic protein FliR compare
PFR28_00229 +0.5 2.8 hypothetical protein compare
PFR28_03681 +0.5 2.1 [Ribosomal protein S18]-alanine N-acetyltransferase compare
PFR28_02963 +0.5 1.8 hypothetical protein compare
PFR28_02278 +0.5 2.1 hypothetical protein compare
PFR28_01656 +0.5 1.2 hypothetical protein compare
PFR28_03368 +0.5 3.3 Glycerol kinase compare
PFR28_03253 +0.5 3.2 Flagellar basal-body rod protein FlgC compare
PFR28_03183 +0.5 1.8 Pantothenate precursors transporter PanS compare
PFR28_00600 +0.5 2.0 hypothetical protein compare
PFR28_00834 +0.5 3.3 hypothetical protein compare
PFR28_02694 +0.5 1.5 hypothetical protein compare
PFR28_00678 +0.5 1.2 hypothetical protein compare
PFR28_03015 +0.5 1.6 7-methyl-GTP pyrophosphatase compare
PFR28_03268 +0.5 2.0 hypothetical protein compare
PFR28_02718 +0.5 1.7 hypothetical protein compare
PFR28_01519 +0.5 1.1 Hydroxypyruvate reductase compare
PFR28_04924 +0.5 1.2 putative Fe(2+)-trafficking protein compare
PFR28_00848 +0.5 2.9 Flagellar biosynthetic protein FlhB compare
PFR28_02357 +0.5 1.5 Bicyclomycin resistance protein compare
PFR28_02111 +0.5 1.5 hypothetical protein compare
PFR28_02455 +0.5 1.2 hypothetical protein compare
PFR28_00068 +0.5 0.4 hypothetical protein compare
PFR28_03684 +0.5 1.7 hypothetical protein compare
PFR28_01386 +0.5 1.2 Glutamine transport ATP-binding protein GlnQ compare
PFR28_04284 +0.5 1.9 hypothetical protein compare
PFR28_01736 +0.5 2.3 NADH oxidase compare
PFR28_01478 +0.5 2.2 hypothetical protein compare
PFR28_04904 +0.5 2.8 HTH-type transcriptional regulator HdfR compare
PFR28_01585 +0.5 1.8 hypothetical protein compare
PFR28_05143 +0.5 1.5 hypothetical protein compare
PFR28_03367 +0.5 3.1 Glycerol uptake facilitator protein compare
PFR28_02909 +0.5 1.4 hypothetical protein compare
PFR28_02221 +0.5 1.7 hypothetical protein compare
PFR28_03045 +0.5 2.0 hypothetical protein compare
PFR28_03599 +0.5 2.1 hypothetical protein compare
PFR28_05097 +0.5 1.0 hypothetical protein compare
PFR28_01573 +0.5 0.9 hypothetical protein compare
PFR28_01502 +0.5 2.0 Narbonolide/10-deoxymethynolide synthase PikA2, modules 3 and 4 compare
PFR28_02912 +0.5 1.2 hypothetical protein compare
PFR28_00831 +0.5 3.0 Flagellar hook-basal body complex protein FliE compare
PFR28_01362 +0.5 0.4 hypothetical protein compare
PFR28_00849 +0.5 3.5 Flagellar biosynthesis protein FlhA compare
PFR28_00836 +0.5 2.6 Flagellar FliJ protein compare
PFR28_01182 +0.5 0.6 hypothetical protein compare
PFR28_02561 +0.5 1.2 RutC family protein YjgH compare
PFR28_05179 +0.5 1.5 Acetyltransferase compare
PFR28_00513 +0.5 2.1 hypothetical protein compare
PFR28_04735 +0.5 0.6 5S ribosomal RNA compare
PFR28_00842 +0.5 2.9 Flagellar motor switch protein FliM compare
PFR28_04800 +0.5 1.2 Multidrug resistance protein MdtA compare
PFR28_04449 +0.5 1.1 hypothetical protein compare
PFR28_03123 +0.5 1.5 hypothetical protein compare
PFR28_02893 +0.5 1.1 hypothetical protein compare
PFR28_05009 +0.4 1.3 hypothetical protein compare
PFR28_00835 +0.4 3.7 Flagellum-specific ATP synthase compare
PFR28_01370 +0.4 4.1 hypothetical protein compare
PFR28_00114 +0.4 2.1 Osmoprotectant import ATP-binding protein OsmV compare
PFR28_00514 +0.4 2.2 hypothetical protein compare
PFR28_03909 +0.4 1.0 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-tyrosine in Pseudomonas sp. RS175

For carbon source L-tyrosine across organisms