Experiment set2IT065 for Escherichia coli BW25113
LB with Carbenicillin disodium salt 0.008 mg/ml
Group: stressMedia: LB + Carbenicillin disodium salt (0.008 mg/ml)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 6/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 959 D3,D4
Specific Phenotypes
For 21 genes in this experiment
For stress Carbenicillin disodium salt in Escherichia coli BW25113
For stress Carbenicillin disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Glycerophospholipid metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| thiosulfate disproportionation IV (rhodanese) | 1 | 1 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis III | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| peptidoglycan recycling II | 10 | 7 | 2 |
| sulfide oxidation IV (mitochondria) | 5 | 2 | 1 |
| phosphatidylglycerol biosynthesis I | 6 | 6 | 1 |
| phosphatidylglycerol biosynthesis II | 6 | 6 | 1 |
| peptidoglycan recycling I | 14 | 14 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| superpathway of phospholipid biosynthesis II (plants) | 28 | 10 | 1 |