Experiment set2IT065 for Escherichia coli BW25113
LB with Carbenicillin disodium salt 0.008 mg/ml
Group: stressMedia: LB + Carbenicillin disodium salt (0.008 mg/ml)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 6/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 959 D3,D4
Specific Phenotypes
For 22 genes in this experiment
For stress Carbenicillin disodium salt in Escherichia coli BW25113
For stress Carbenicillin disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Glycerophospholipid metabolism
- Drug metabolism - other enzymes
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| thiosulfate disproportionation IV (rhodanese) | 1 | 1 | 1 |
| guanine and guanosine salvage II | 2 | 2 | 1 |
| xanthine and xanthosine salvage | 2 | 2 | 1 |
| guanine and guanosine salvage I | 2 | 2 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| adenine salvage | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin biosynthesis III | 3 | 3 | 1 |
| superpathway of guanine and guanosine salvage | 3 | 3 | 1 |
| adenine and adenosine salvage III | 4 | 4 | 1 |
| peptidoglycan recycling II | 10 | 7 | 2 |
| sulfide oxidation IV (mitochondria) | 5 | 2 | 1 |
| phosphatidylglycerol biosynthesis I | 6 | 6 | 1 |
| phosphatidylglycerol biosynthesis II | 6 | 6 | 1 |
| peptidoglycan recycling I | 14 | 14 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 1 |
| superpathway of purine nucleotide salvage | 14 | 13 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| superpathway of phospholipid biosynthesis II (plants) | 28 | 10 | 1 |